HEADER HYDROLASE 16-NOV-12 4HZY TITLE CRYSTAL STRUCTURE OF INFLUENZA A NEURAMINIDASE N3-H274Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 83-469; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 489926; SOURCE 4 GENE: NA; SOURCE 5 EXPRESSION_SYSTEM_CELL: HI5; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS NEURAMINIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.LI,J.QI,C.J.VAVRICKA,G.F.GAO REVDAT 3 08-NOV-23 4HZY 1 HETSYN REVDAT 2 29-JUL-20 4HZY 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 06-NOV-13 4HZY 0 JRNL AUTH Q.LI,J.QI,Y.WU,H.KIYOTA,K.TANAKA,Y.SUHARA,H.OHRUI,Y.SUZUKI, JRNL AUTH 2 C.J.VAVRICKA,G.F.GAO JRNL TITL FUNCTIONAL AND STRUCTURAL ANALYSIS OF INFLUENZA VIRUS JRNL TITL 2 NEURAMINIDASE N3 OFFERS FURTHER INSIGHT INTO THE MECHANISMS JRNL TITL 3 OF OSELTAMIVIR RESISTANCE. JRNL REF J.VIROL. V. 87 10016 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23824808 JRNL DOI 10.1128/JVI.01129-13 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 44906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6582 - 4.0250 0.96 2707 142 0.1629 0.1745 REMARK 3 2 4.0250 - 3.1956 0.97 2699 127 0.1379 0.1413 REMARK 3 3 3.1956 - 2.7919 1.00 2710 153 0.1617 0.1723 REMARK 3 4 2.7919 - 2.5367 1.00 2777 113 0.1644 0.1702 REMARK 3 5 2.5367 - 2.3549 1.00 2734 137 0.1547 0.1788 REMARK 3 6 2.3549 - 2.2161 1.00 2708 139 0.1471 0.1686 REMARK 3 7 2.2161 - 2.1051 0.99 2754 143 0.1429 0.1683 REMARK 3 8 2.1051 - 2.0135 0.99 2678 164 0.1426 0.1667 REMARK 3 9 2.0135 - 1.9360 0.99 2675 150 0.1479 0.1767 REMARK 3 10 1.9360 - 1.8692 0.98 2676 165 0.1485 0.1819 REMARK 3 11 1.8692 - 1.8108 0.98 2660 130 0.1468 0.1530 REMARK 3 12 1.8108 - 1.7590 0.97 2615 157 0.1380 0.2065 REMARK 3 13 1.7590 - 1.7127 0.96 2613 144 0.1443 0.1763 REMARK 3 14 1.7127 - 1.6709 0.95 2582 145 0.1485 0.2124 REMARK 3 15 1.6709 - 1.6329 0.94 2560 132 0.1526 0.1986 REMARK 3 16 1.6329 - 1.5982 0.92 2499 118 0.1502 0.1902 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 27.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07620 REMARK 3 B22 (A**2) : -0.07620 REMARK 3 B33 (A**2) : 0.15230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3214 REMARK 3 ANGLE : 1.187 4360 REMARK 3 CHIRALITY : 0.083 471 REMARK 3 PLANARITY : 0.005 559 REMARK 3 DIHEDRAL : 18.656 1193 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 82:165) REMARK 3 ORIGIN FOR THE GROUP (A): 17.307 -0.595 -29.755 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.1219 REMARK 3 T33: 0.1106 T12: -0.0081 REMARK 3 T13: 0.0080 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2064 L22: 0.2508 REMARK 3 L33: 0.4233 L12: -0.1535 REMARK 3 L13: 0.1158 L23: -0.0192 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.0213 S13: 0.0450 REMARK 3 S21: 0.0449 S22: -0.0056 S23: -0.0117 REMARK 3 S31: -0.0279 S32: 0.0816 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 166:201) REMARK 3 ORIGIN FOR THE GROUP (A): 17.774 9.840 -25.934 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.1703 REMARK 3 T33: 0.1677 T12: -0.0227 REMARK 3 T13: -0.0030 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.1762 L22: 0.2592 REMARK 3 L33: 0.1017 L12: -0.0867 REMARK 3 L13: 0.1257 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 0.0370 S13: 0.1038 REMARK 3 S21: -0.0004 S22: 0.0345 S23: -0.0910 REMARK 3 S31: -0.0819 S32: 0.0883 S33: 0.0069 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 202:326) REMARK 3 ORIGIN FOR THE GROUP (A): 33.911 7.766 -21.363 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.1375 REMARK 3 T33: 0.1344 T12: 0.0041 REMARK 3 T13: -0.0053 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.4835 L22: 0.4201 REMARK 3 L33: 0.1995 L12: 0.0521 REMARK 3 L13: -0.0725 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.0070 S13: -0.0142 REMARK 3 S21: 0.0144 S22: 0.0141 S23: -0.0986 REMARK 3 S31: -0.0326 S32: 0.0682 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 327:349) REMARK 3 ORIGIN FOR THE GROUP (A): 46.486 -3.784 -31.981 REMARK 3 T TENSOR REMARK 3 T11: 0.1128 T22: 0.1322 REMARK 3 T33: 0.1215 T12: -0.0040 REMARK 3 T13: -0.0013 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.1826 L22: 0.2152 REMARK 3 L33: 0.0421 L12: 0.1756 REMARK 3 L13: 0.0658 L23: 0.0928 REMARK 3 S TENSOR REMARK 3 S11: 0.0492 S12: -0.0449 S13: -0.0062 REMARK 3 S21: 0.0261 S22: -0.0178 S23: -0.0017 REMARK 3 S31: 0.0396 S32: -0.0292 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 350:390) REMARK 3 ORIGIN FOR THE GROUP (A): 38.934 -10.824 -26.317 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.1372 REMARK 3 T33: 0.1358 T12: 0.0051 REMARK 3 T13: 0.0072 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.1851 L22: 0.2719 REMARK 3 L33: 0.0749 L12: -0.0426 REMARK 3 L13: -0.0010 L23: 0.1411 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: 0.0433 S13: -0.0376 REMARK 3 S21: -0.0379 S22: 0.0185 S23: -0.0503 REMARK 3 S31: -0.0166 S32: 0.0413 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.598 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BAT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM TRIS, PH 8.0, 50MM NACL, 0.1M BIS REMARK 280 -TRIS PROPANE (PH 9.0), 10% V/V JEFFAMINE ED-2001 (PH 7.0) , REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.20650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.20650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.12550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.20650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.20650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.12550 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 53.20650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 53.20650 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 31.12550 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 53.20650 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 53.20650 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 31.12550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 745 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 943 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 959 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 247 CE3 TRP A 295 1.77 REMARK 500 O ALA A 247 CZ3 TRP A 295 1.89 REMARK 500 O HOH A 826 O HOH A 925 1.94 REMARK 500 O HOH A 805 O HOH A 949 1.98 REMARK 500 O HOH A 628 O HOH A 701 2.08 REMARK 500 O4 NAG C 2 O HOH A 713 2.13 REMARK 500 O4 NAG B 2 O HOH A 784 2.14 REMARK 500 O HOH A 875 O HOH A 999 2.17 REMARK 500 O HOH A 713 O HOH A 837 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 100 -84.25 -113.04 REMARK 500 ASP A 125 -157.76 -100.48 REMARK 500 ASP A 200 44.02 -157.84 REMARK 500 ILE A 222 64.39 61.15 REMARK 500 THR A 225 -158.06 -138.32 REMARK 500 ASN A 248 -169.70 -168.15 REMARK 500 SER A 249 161.76 -47.75 REMARK 500 ALA A 250 155.33 170.40 REMARK 500 LYS A 272A -61.73 -121.14 REMARK 500 ILE A 284 -66.90 64.38 REMARK 500 CYS A 291 -162.32 -124.31 REMARK 500 TRP A 295 -63.20 -123.93 REMARK 500 ASN A 306 -169.67 -117.62 REMARK 500 SER A 319 124.33 -37.38 REMARK 500 SER A 332 -149.64 -116.59 REMARK 500 SER A 404 -131.68 -116.70 REMARK 500 ALA A 414 -147.46 -104.55 REMARK 500 ASP A 450 43.88 -83.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 O REMARK 620 2 GLY A 297 O 93.4 REMARK 620 3 ASP A 324 OD2 88.8 105.3 REMARK 620 4 GLY A 345 O 88.9 99.1 155.6 REMARK 620 5 HOH A 640 O 159.9 105.8 91.7 82.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CL0 RELATED DB: PDB REMARK 900 N1 NEURAMINIDASE H274Y + OSELTAMIVIR REMARK 900 RELATED ID: 4HZV RELATED DB: PDB REMARK 900 RELATED ID: 4HZW RELATED DB: PDB REMARK 900 RELATED ID: 4HZX RELATED DB: PDB REMARK 900 RELATED ID: 4HZZ RELATED DB: PDB REMARK 900 RELATED ID: 4I00 RELATED DB: PDB DBREF 4HZY A 83 469 UNP A9YN63 A9YN63_9INFA 83 469 SEQADV 4HZY PHE A 82 UNP A9YN63 EXPRESSION TAG SEQADV 4HZY TYR A 274 UNP A9YN63 HIS 276 ENGINEERED MUTATION SEQRES 1 A 388 PHE ARG PRO PHE LYS SER PRO LEU PRO LEU CYS PRO PHE SEQRES 2 A 388 ARG GLY PHE PHE PRO PHE HIS LYS ASP ASN ALA ILE ARG SEQRES 3 A 388 LEU GLY GLU ASN LYS ASP VAL ILE VAL THR ARG GLU PRO SEQRES 4 A 388 TYR VAL SER CYS ASP ASN ASP ASN CYS TRP SER PHE ALA SEQRES 5 A 388 LEU ALA GLN GLY ALA LEU LEU GLY THR LYS HIS SER ASN SEQRES 6 A 388 GLY THR ILE LYS ASP ARG THR PRO TYR ARG SER LEU ILE SEQRES 7 A 388 ARG PHE PRO ILE GLY THR ALA PRO VAL LEU GLY ASN TYR SEQRES 8 A 388 LYS GLU ILE CYS ILE ALA TRP SER SER SER SER CYS PHE SEQRES 9 A 388 ASP GLY LYS GLU TRP MET HIS VAL CYS MET THR GLY ASN SEQRES 10 A 388 ASP ASN ASP ALA SER ALA GLN ILE ILE TYR GLY GLY ARG SEQRES 11 A 388 MET THR ASP SER ILE LYS SER TRP ARG LYS ASP ILE LEU SEQRES 12 A 388 ARG THR GLN GLU SER GLU CYS GLN CYS ILE ASP GLY THR SEQRES 13 A 388 CYS VAL VAL ALA VAL THR ASP GLY PRO ALA ALA ASN SER SEQRES 14 A 388 ALA ASP TYR ARG VAL TYR TRP ILE ARG GLU GLY LYS ILE SEQRES 15 A 388 ILE LYS TYR GLU ASN VAL PRO LYS THR LYS ILE GLN TYR SEQRES 16 A 388 LEU GLU GLU CYS SER CYS TYR VAL ASP ILE ASP VAL TYR SEQRES 17 A 388 CYS ILE CYS ARG ASP ASN TRP LYS GLY SER ASN ARG PRO SEQRES 18 A 388 TRP MET ARG ILE ASN ASN GLU THR ILE LEU GLU THR GLY SEQRES 19 A 388 TYR VAL CYS SER LYS PHE HIS SER ASP THR PRO ARG PRO SEQRES 20 A 388 ALA ASP PRO SER THR MET SER CYS ASP SER PRO SER ASN SEQRES 21 A 388 VAL ASN GLY GLY PRO GLY VAL LYS GLY PHE GLY PHE LYS SEQRES 22 A 388 ALA GLY ASP ASP VAL TRP LEU GLY ARG THR VAL SER THR SEQRES 23 A 388 SER GLY ARG SER GLY PHE GLU ILE ILE LYS VAL THR GLU SEQRES 24 A 388 GLY TRP ILE ASN SER PRO ASN HIS VAL LYS SER ILE THR SEQRES 25 A 388 GLN THR LEU VAL SER ASN ASN ASP TRP SER GLY TYR SER SEQRES 26 A 388 GLY SER PHE ILE VAL LYS ALA LYS ASP CYS PHE GLN PRO SEQRES 27 A 388 CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG PRO ASN LYS SEQRES 28 A 388 ASN ASP ASP VAL SER TRP THR SER ASN SER ILE VAL THR SEQRES 29 A 388 PHE CYS GLY LEU ASP ASN GLU PRO GLY SER GLY ASN TRP SEQRES 30 A 388 PRO ASP GLY SER ASN ILE GLY PHE MET PRO LYS MODRES 4HZY ASN A 146 ASN GLYCOSYLATION SITE MODRES 4HZY ASN A 307 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET CA A 507 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 FUC 2(C6 H12 O5) FORMUL 4 CA CA 2+ FORMUL 5 HOH *422(H2 O) HELIX 1 1 ASN A 104 GLY A 109 1 6 HELIX 2 2 THR A 142 ASN A 146 5 5 HELIX 3 3 ASN A 463 MET A 467 5 5 SHEET 1 A 4 GLY A 96 LYS A 102 0 SHEET 2 A 4 THR A 439 LEU A 449 -1 O THR A 445 N PHE A 100 SHEET 3 A 4 PHE A 418 GLY A 429 -1 N PRO A 420 O GLY A 448 SHEET 4 A 4 SER A 407 LYS A 413 -1 N VAL A 412 O GLN A 419 SHEET 1 B 4 ILE A 115 CYS A 124 0 SHEET 2 B 4 CYS A 129 LEU A 139 -1 O ALA A 138 N VAL A 116 SHEET 3 B 4 SER A 157 PRO A 162 -1 O SER A 157 N ALA A 135 SHEET 4 B 4 LYS A 172 ILE A 176 -1 O ILE A 174 N LEU A 158 SHEET 1 C 4 SER A 179 PHE A 184 0 SHEET 2 C 4 TRP A 189 THR A 195 -1 O MET A 190 N CYS A 183 SHEET 3 C 4 SER A 202 TYR A 207 -1 O GLN A 204 N CYS A 193 SHEET 4 C 4 ARG A 210 LYS A 216 -1 O ARG A 210 N TYR A 207 SHEET 1 D 4 GLN A 231 ILE A 233 0 SHEET 2 D 4 THR A 236 ASP A 243 -1 O VAL A 238 N GLN A 231 SHEET 3 D 4 ASP A 251 ARG A 258 -1 O ILE A 257 N CYS A 237 SHEET 4 D 4 LYS A 261 ASN A 267 -1 O ILE A 263 N TRP A 256 SHEET 1 E 4 GLU A 276 VAL A 282 0 SHEET 2 E 4 VAL A 287 ARG A 292 -1 O ILE A 290 N SER A 279 SHEET 3 E 4 PRO A 301 ILE A 305 -1 O ILE A 305 N VAL A 287 SHEET 4 E 4 ILE A 311 TYR A 316 -1 O GLY A 315 N TRP A 302 SHEET 1 F 4 GLY A 353 ALA A 356 0 SHEET 2 F 4 ASP A 359 ARG A 364 -1 O TRP A 361 N PHE A 354 SHEET 3 F 4 SER A 372 THR A 380 -1 O VAL A 379 N VAL A 360 SHEET 4 F 4 VAL A 390 TRP A 403 -1 O ASP A 402 N GLY A 373 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.04 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.05 SSBOND 3 CYS A 175 CYS A 193 1555 1555 2.03 SSBOND 4 CYS A 183 CYS A 230 1555 1555 2.03 SSBOND 5 CYS A 232 CYS A 237 1555 1555 2.05 SSBOND 6 CYS A 278 CYS A 291 1555 1555 2.06 SSBOND 7 CYS A 280 CYS A 289 1555 1555 2.04 SSBOND 8 CYS A 318 CYS A 337 1555 1555 2.07 SSBOND 9 CYS A 421 CYS A 447 1555 1555 2.07 LINK ND2 ASN A 146 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 307 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.43 LINK O ASP A 293 CA CA A 507 1555 1555 2.29 LINK O GLY A 297 CA CA A 507 1555 1555 2.33 LINK OD2 ASP A 324 CA CA A 507 1555 1555 2.44 LINK O GLY A 345 CA CA A 507 1555 1555 2.39 LINK CA CA A 507 O HOH A 640 1555 1555 2.40 CISPEP 1 THR A 325 PRO A 326 0 2.58 CISPEP 2 ASP A 330 PRO A 331 0 -5.29 CISPEP 3 GLY A 346 PRO A 347 0 2.38 CISPEP 4 ARG A 430 PRO A 431 0 5.00 CRYST1 106.413 106.413 62.251 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009397 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016064 0.00000