HEADER STRUCTURAL PROTEIN 17-NOV-12 4I0O TITLE NUCLEOPORIN ELYS (AA1-494), MUS MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ELYS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-494; COMPND 5 SYNONYM: EMBRYONIC LARGE MOLECULE DERIVED FROM YOLK SAC, PROTEIN MEL- COMPND 6 28, PUTATIVE AT-HOOK-CONTAINING TRANSCRIPTION FACTOR 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: AHCTF1, ELYS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BETA PROPELLER, STRUCTURAL PROTEIN, NUCLEAR PORE COMPLEX, WD40 KEYWDS 2 REPEAT, MRNA TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.BILOKAPIC,T.U.SCHWARTZ REVDAT 1 17-APR-13 4I0O 0 JRNL AUTH S.BILOKAPIC,T.U.SCHWARTZ JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF THE 252 KDA NUCLEOPORIN JRNL TITL 2 ELYS REVEAL DISTINCT ROLES FOR ITS THREE TETHERED DOMAINS. JRNL REF STRUCTURE V. 21 572 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23499022 JRNL DOI 10.1016/J.STR.2013.02.006 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1063) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 69605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5272 - 5.5402 0.98 2621 146 0.1722 0.1896 REMARK 3 2 5.5402 - 4.4040 0.99 2659 142 0.1433 0.1750 REMARK 3 3 4.4040 - 3.8492 0.99 2720 123 0.1459 0.1725 REMARK 3 4 3.8492 - 3.4981 1.00 2651 137 0.1680 0.1956 REMARK 3 5 3.4981 - 3.2478 1.00 2683 136 0.1730 0.1939 REMARK 3 6 3.2478 - 3.0566 1.00 2612 202 0.1850 0.2217 REMARK 3 7 3.0566 - 2.9038 1.00 2671 140 0.1835 0.1790 REMARK 3 8 2.9038 - 2.7775 0.99 2622 146 0.1869 0.2540 REMARK 3 9 2.7775 - 2.6707 0.99 2691 161 0.1866 0.2329 REMARK 3 10 2.6707 - 2.5786 0.99 2643 147 0.1867 0.2234 REMARK 3 11 2.5786 - 2.4980 0.99 2676 158 0.1888 0.2222 REMARK 3 12 2.4980 - 2.4267 0.99 2656 121 0.1866 0.2247 REMARK 3 13 2.4267 - 2.3628 1.00 2691 155 0.1963 0.2402 REMARK 3 14 2.3628 - 2.3052 0.99 2694 131 0.1987 0.2232 REMARK 3 15 2.3052 - 2.2528 0.99 2693 100 0.1929 0.2938 REMARK 3 16 2.2528 - 2.2049 0.99 2644 141 0.2003 0.2402 REMARK 3 17 2.2049 - 2.1608 0.99 2669 116 0.2007 0.2416 REMARK 3 18 2.1608 - 2.1201 0.99 2636 147 0.2031 0.2664 REMARK 3 19 2.1201 - 2.0822 0.98 2668 121 0.2000 0.2538 REMARK 3 20 2.0822 - 2.0470 0.99 2628 137 0.1996 0.2855 REMARK 3 21 2.0470 - 2.0139 0.99 2659 126 0.2189 0.2529 REMARK 3 22 2.0139 - 1.9830 0.98 2666 152 0.2307 0.2882 REMARK 3 23 1.9830 - 1.9538 0.99 2596 159 0.2471 0.2586 REMARK 3 24 1.9538 - 1.9263 0.97 2629 148 0.2585 0.3218 REMARK 3 25 1.9263 - 1.9003 0.87 2326 109 0.3098 0.3733 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3712 REMARK 3 ANGLE : 1.429 5060 REMARK 3 CHIRALITY : 0.095 584 REMARK 3 PLANARITY : 0.006 653 REMARK 3 DIHEDRAL : 14.007 1346 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 3 through 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.8877 -2.9500 8.4705 REMARK 3 T TENSOR REMARK 3 T11: 0.1597 T22: 0.3612 REMARK 3 T33: 0.2464 T12: -0.0357 REMARK 3 T13: 0.0159 T23: -0.1120 REMARK 3 L TENSOR REMARK 3 L11: 3.0567 L22: 6.2797 REMARK 3 L33: 3.4068 L12: -0.3412 REMARK 3 L13: -0.9093 L23: -2.2024 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0335 S13: 0.1315 REMARK 3 S21: 0.1020 S22: -0.1166 S23: -0.2885 REMARK 3 S31: -0.1474 S32: 0.4362 S33: 0.1063 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 59 through 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2717 10.1284 6.1218 REMARK 3 T TENSOR REMARK 3 T11: 0.2392 T22: 0.2633 REMARK 3 T33: 0.2108 T12: -0.0809 REMARK 3 T13: 0.0605 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 3.3911 L22: 2.5268 REMARK 3 L33: 2.6154 L12: -1.7461 REMARK 3 L13: -0.7075 L23: -0.3593 REMARK 3 S TENSOR REMARK 3 S11: 0.1350 S12: 0.5127 S13: 0.2194 REMARK 3 S21: -0.3272 S22: 0.1168 S23: -0.3657 REMARK 3 S31: -0.4674 S32: 0.2187 S33: -0.1602 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 132 through 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2931 14.1879 12.8916 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.1597 REMARK 3 T33: 0.2146 T12: 0.0047 REMARK 3 T13: 0.0116 T23: 0.0676 REMARK 3 L TENSOR REMARK 3 L11: 2.2615 L22: 2.4528 REMARK 3 L33: 1.8857 L12: 0.3836 REMARK 3 L13: -0.0103 L23: 0.1118 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: 0.3703 S13: 0.3992 REMARK 3 S21: -0.1711 S22: 0.0402 S23: 0.0793 REMARK 3 S31: -0.4099 S32: -0.0899 S33: -0.0375 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resid 249 through 387 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4695 -5.9082 24.4898 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.1297 REMARK 3 T33: 0.1340 T12: -0.0368 REMARK 3 T13: -0.0037 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.5920 L22: 2.8760 REMARK 3 L33: 2.8124 L12: -0.6508 REMARK 3 L13: 0.0475 L23: -0.1498 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: 0.1353 S13: 0.0284 REMARK 3 S21: 0.1119 S22: 0.0087 S23: 0.1927 REMARK 3 S31: -0.1345 S32: -0.0474 S33: 0.0337 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resid 388 through 493 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6658 -18.1731 20.6869 REMARK 3 T TENSOR REMARK 3 T11: 0.2262 T22: 0.2666 REMARK 3 T33: 0.2750 T12: 0.0247 REMARK 3 T13: -0.0110 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.0247 L22: 1.5703 REMARK 3 L33: 2.0744 L12: 0.2948 REMARK 3 L13: -1.8578 L23: -0.2982 REMARK 3 S TENSOR REMARK 3 S11: -0.2989 S12: -0.2254 S13: -0.5640 REMARK 3 S21: 0.0225 S22: 0.0746 S23: -0.2301 REMARK 3 S31: 0.4008 S32: 0.4161 S33: 0.1490 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-12. REMARK 100 THE RCSB ID CODE IS RCSB076156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69665 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.71400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS/HCL, PEG 3350, AMMONIUM REMARK 280 ACETATE, OCTYL-BETA-D-GLUCOPYRANOSIDE, PH 6.5, UNDER OIL, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.05850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 GLN A 2 REMARK 465 GLY A 338 REMARK 465 THR A 339 REMARK 465 PHE A 340 REMARK 465 PRO A 341 REMARK 465 LEU A 342 REMARK 465 ARG A 343 REMARK 465 GLY A 344 REMARK 465 GLN A 345 REMARK 465 SER A 362 REMARK 465 HIS A 363 REMARK 465 GLY A 364 REMARK 465 ASP A 365 REMARK 465 ARG A 366 REMARK 465 GLU A 367 REMARK 465 GLU A 368 REMARK 465 SER A 369 REMARK 465 MSE A 370 REMARK 465 ARG A 371 REMARK 465 GLU A 372 REMARK 465 ALA A 373 REMARK 465 GLY A 458 REMARK 465 VAL A 459 REMARK 465 PRO A 460 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 TYR A 463 REMARK 465 PRO A 464 REMARK 465 PRO A 465 REMARK 465 GLY A 494 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 274 O HOH A 637 2.05 REMARK 500 O TYR A 390 O HOH A 643 2.14 REMARK 500 O LEU A 352 O HOH A 582 2.15 REMARK 500 NH2 ARG A 417 O HOH A 613 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 354 CB CYS A 354 SG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 30 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 28 -61.42 -99.61 REMARK 500 THR A 29 39.50 -71.68 REMARK 500 GLU A 75 62.98 38.38 REMARK 500 GLN A 76 131.65 -170.27 REMARK 500 HIS A 89 -130.15 47.43 REMARK 500 GLU A 183 30.40 -99.55 REMARK 500 TYR A 257 102.56 -164.41 REMARK 500 ARG A 280 37.73 -140.10 REMARK 500 SER A 294 -103.86 -118.06 REMARK 500 GLN A 411 38.59 72.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 4I0O A 1 494 UNP Q8CJF7 ELYS_MOUSE 1 494 SEQADV 4I0O PRO A -2 UNP Q8CJF7 EXPRESSION TAG SEQADV 4I0O GLY A -1 UNP Q8CJF7 EXPRESSION TAG SEQADV 4I0O SER A 0 UNP Q8CJF7 EXPRESSION TAG SEQRES 1 A 497 PRO GLY SER MSE GLN ASP LEU THR ALA GLN VAL THR SER SEQRES 2 A 497 ASP LEU LEU HIS PHE PRO GLU VAL THR ILE GLU ALA LEU SEQRES 3 A 497 GLY GLU ASP GLU ILE THR LEU GLU SER VAL LEU ARG GLY SEQRES 4 A 497 LYS PHE ALA ALA GLY LYS ASN GLY LEU ALA CYS LEU ALA SEQRES 5 A 497 CYS GLY PRO GLN LEU GLU VAL VAL ASN SER LEU THR GLY SEQRES 6 A 497 GLU ARG LEU SER ALA TYR ARG PHE SER GLY VAL ASN GLU SEQRES 7 A 497 GLN PRO PRO VAL VAL LEU ALA VAL LYS GLU PHE SER TRP SEQRES 8 A 497 HIS LYS ARG THR GLY LEU LEU ILE GLY LEU GLU GLU ALA SEQRES 9 A 497 ASP GLY SER VAL LEU CYS LEU TYR ASP LEU GLY ILE SER SEQRES 10 A 497 ARG VAL VAL LYS ALA VAL VAL LEU PRO GLY ARG VAL THR SEQRES 11 A 497 ALA ILE GLU PRO ILE ILE ASN HIS GLY GLY ALA SER ALA SEQRES 12 A 497 SER THR GLN HIS LEU HIS PRO SER LEU ARG TRP LEU PHE SEQRES 13 A 497 GLY VAL ALA ALA VAL VAL THR ASP VAL GLY GLN ILE LEU SEQRES 14 A 497 LEU ILE ASP LEU CYS LEU ASP ASP LEU SER CYS SER GLN SEQRES 15 A 497 ASN GLU VAL GLU ALA SER ASP LEU GLU VAL ILE THR GLY SEQRES 16 A 497 ILE PRO ALA GLU VAL PRO HIS ILE ARG GLU ARG VAL MSE SEQRES 17 A 497 ARG GLU GLY ARG HIS LEU CYS PHE GLN LEU VAL SER PRO SEQRES 18 A 497 LEU GLY VAL ALA ILE SER THR LEU SER TYR ILE ASN ARG SEQRES 19 A 497 THR ASN GLN LEU ALA VAL GLY PHE SER ASP GLY TYR LEU SEQRES 20 A 497 ALA LEU TRP ASN MSE LYS SER MSE LYS ARG GLU TYR TYR SEQRES 21 A 497 THR GLN LEU GLU GLY GLY ARG VAL PRO VAL HIS ALA VAL SEQRES 22 A 497 ALA PHE GLN GLU PRO GLU ASN ASP PRO ARG ASN CYS CYS SEQRES 23 A 497 TYR LEU TRP ALA VAL GLN SER THR GLN ASP SER GLU GLY SEQRES 24 A 497 ASP VAL LEU SER LEU HIS LEU LEU GLN LEU ALA PHE GLY SEQRES 25 A 497 ASP ARG LYS CYS LEU ALA SER GLY GLN ILE LEU TYR GLU SEQRES 26 A 497 GLY LEU GLU TYR CYS GLU GLU ARG TYR THR LEU ASP LEU SEQRES 27 A 497 ALA GLY GLY THR PHE PRO LEU ARG GLY GLN THR SER ASN SEQRES 28 A 497 THR LYS LEU LEU GLY CYS GLN SER ILE GLU ARG PHE PRO SEQRES 29 A 497 SER HIS GLY ASP ARG GLU GLU SER MSE ARG GLU ALA LEU SEQRES 30 A 497 SER PRO ASP THR SER VAL SER VAL PHE THR TRP GLN VAL SEQRES 31 A 497 ASN ILE TYR GLY GLN GLY LYS PRO SER VAL TYR LEU GLY SEQRES 32 A 497 LEU PHE ASP ILE ASN ARG TRP TYR HIS ALA GLN MSE PRO SEQRES 33 A 497 ASP SER LEU ARG SER GLY GLU SER LEU HIS ASN CYS SER SEQRES 34 A 497 TYR PHE ALA LEU TRP SER LEU ASP SER VAL VAL SER ARG SEQRES 35 A 497 THR SER PRO HIS HIS ILE LEU ASP ILE LEU VAL HIS GLU SEQRES 36 A 497 ARG SER LEU ASN ARG GLY VAL PRO PRO SER TYR PRO PRO SEQRES 37 A 497 PRO GLU GLN PHE PHE ASN PRO SER THR PHE ASN PHE ASP SEQRES 38 A 497 ALA THR CYS LEU LEU ASP SER GLY VAL ILE HIS VAL THR SEQRES 39 A 497 CYS ALA GLY MODRES 4I0O MSE A 205 MET SELENOMETHIONINE MODRES 4I0O MSE A 249 MET SELENOMETHIONINE MODRES 4I0O MSE A 252 MET SELENOMETHIONINE MODRES 4I0O MSE A 412 MET SELENOMETHIONINE HET MSE A 205 8 HET MSE A 249 8 HET MSE A 252 8 HET MSE A 412 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *169(H2 O) HELIX 1 1 PRO A 16 GLU A 25 1 10 HELIX 2 2 SER A 139 GLN A 143 5 5 HELIX 3 3 HIS A 146 TRP A 151 1 6 HELIX 4 4 ASN A 180 ALA A 184 5 5 HELIX 5 5 GLU A 196 GLU A 207 1 12 HELIX 6 6 ILE A 404 ALA A 410 1 7 HELIX 7 7 SER A 421 CYS A 425 5 5 HELIX 8 8 LEU A 433 SER A 441 1 9 HELIX 9 9 GLU A 452 LEU A 455 5 4 HELIX 10 10 PRO A 466 PHE A 475 5 10 SHEET 1 A 3 GLN A 7 VAL A 8 0 SHEET 2 A 3 GLY A 486 CYS A 492 -1 O THR A 491 N GLN A 7 SHEET 3 A 3 LEU A 13 HIS A 14 -1 N LEU A 13 O VAL A 487 SHEET 1 B 4 GLN A 7 VAL A 8 0 SHEET 2 B 4 GLY A 486 CYS A 492 -1 O THR A 491 N GLN A 7 SHEET 3 B 4 PHE A 477 LEU A 483 -1 N LEU A 483 O GLY A 486 SHEET 4 B 4 ILE A 445 VAL A 450 -1 N LEU A 446 O LEU A 482 SHEET 1 C 4 ARG A 35 PHE A 38 0 SHEET 2 C 4 LEU A 45 CYS A 50 -1 O CYS A 47 N LYS A 37 SHEET 3 C 4 GLN A 53 ASN A 58 -1 O VAL A 57 N ALA A 46 SHEET 4 C 4 ARG A 64 ARG A 69 -1 O SER A 66 N VAL A 56 SHEET 1 D 4 VAL A 79 TRP A 88 0 SHEET 2 D 4 ARG A 91 GLU A 99 -1 O ARG A 91 N TRP A 88 SHEET 3 D 4 SER A 104 ASP A 110 -1 O VAL A 105 N LEU A 98 SHEET 4 D 4 VAL A 116 LEU A 122 -1 O VAL A 117 N LEU A 108 SHEET 1 E 5 VAL A 126 ILE A 133 0 SHEET 2 E 5 VAL A 155 THR A 160 -1 O ALA A 157 N GLU A 130 SHEET 3 E 5 ILE A 165 ASP A 169 -1 O ILE A 168 N ALA A 156 SHEET 4 E 5 HIS A 210 GLN A 214 -1 O PHE A 213 N LEU A 167 SHEET 5 E 5 LEU A 187 THR A 191 1 N ILE A 190 O CYS A 212 SHEET 1 F 4 ILE A 223 ILE A 229 0 SHEET 2 F 4 GLN A 234 PHE A 239 -1 O ALA A 236 N SER A 227 SHEET 3 F 4 TYR A 243 ASN A 248 -1 O ALA A 245 N VAL A 237 SHEET 4 F 4 ARG A 254 GLN A 259 -1 O GLU A 255 N LEU A 246 SHEET 1 G 4 VAL A 267 GLN A 273 0 SHEET 2 G 4 CYS A 282 SER A 290 -1 O VAL A 288 N HIS A 268 SHEET 3 G 4 LEU A 299 CYS A 313 -1 O LEU A 306 N CYS A 283 SHEET 4 G 4 ILE A 319 ALA A 336 -1 O GLU A 325 N ALA A 307 SHEET 1 H 4 SER A 347 ARG A 359 0 SHEET 2 H 4 THR A 378 ILE A 389 -1 O ASN A 388 N ASN A 348 SHEET 3 H 4 SER A 396 ASP A 403 -1 O GLY A 400 N PHE A 383 SHEET 4 H 4 PHE A 428 SER A 432 -1 O TRP A 431 N LEU A 399 LINK C VAL A 204 N MSE A 205 1555 1555 1.32 LINK C MSE A 205 N ARG A 206 1555 1555 1.33 LINK C ASN A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N LYS A 250 1555 1555 1.34 LINK C SER A 251 N MSE A 252 1555 1555 1.33 LINK C MSE A 252 N LYS A 253 1555 1555 1.32 LINK C GLN A 411 N MSE A 412 1555 1555 1.32 LINK C MSE A 412 N PRO A 413 1555 1555 1.32 CISPEP 1 LEU A 30 GLU A 31 0 14.01 CISPEP 2 SER A 441 PRO A 442 0 4.73 CRYST1 52.598 78.117 58.849 90.00 106.59 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019012 0.000000 0.005664 0.00000 SCALE2 0.000000 0.012801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017731 0.00000