HEADER OXIDOREDUCTASE/IMMUNE SYSTEM 19-NOV-12 4I13 TITLE NANOBODY CA1697 BINDING TO THE DHFR.FOLATE BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN CA1697 (NANOBODY); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FOLA, TMRA, B0048, JW0047; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_TAXID: 9844; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ALPHA/BETA FOLD, IMMUNOGLOBULIN FOLD, REDUCTASE, NADPH, FOLATE KEYWDS 2 DERIVATIVES, REDUCTION, OXIDOREDUCTASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.OYEN,J.STEYAERT,J.N.BARLOW REVDAT 2 30-OCT-24 4I13 1 REMARK REVDAT 1 27-NOV-13 4I13 0 JRNL AUTH D.OYEN,J.STEYAERT,J.N.BARLOW JRNL TITL EXPLORING AN ALTERNATIVE ANTIBODY INTERACTION MECHANISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6125 - 4.0209 0.99 2804 155 0.1534 0.1831 REMARK 3 2 4.0209 - 3.1960 1.00 2708 139 0.1447 0.1698 REMARK 3 3 3.1960 - 2.7933 1.00 2687 136 0.1604 0.1759 REMARK 3 4 2.7933 - 2.5385 1.00 2669 118 0.1620 0.2124 REMARK 3 5 2.5385 - 2.3568 1.00 2657 137 0.1683 0.1900 REMARK 3 6 2.3568 - 2.2181 1.00 2637 144 0.1614 0.1878 REMARK 3 7 2.2181 - 2.1071 1.00 2625 142 0.1514 0.1854 REMARK 3 8 2.1071 - 2.0155 1.00 2628 136 0.1428 0.1522 REMARK 3 9 2.0155 - 1.9380 1.00 2604 144 0.1493 0.1554 REMARK 3 10 1.9380 - 1.8712 1.00 2619 131 0.1456 0.1705 REMARK 3 11 1.8712 - 1.8127 1.00 2595 143 0.1499 0.1810 REMARK 3 12 1.8127 - 1.7609 1.00 2626 138 0.1527 0.1807 REMARK 3 13 1.7609 - 1.7146 1.00 2594 138 0.1523 0.1851 REMARK 3 14 1.7146 - 1.6728 1.00 2620 123 0.1515 0.1840 REMARK 3 15 1.6728 - 1.6348 1.00 2599 159 0.1612 0.1867 REMARK 3 16 1.6348 - 1.6000 1.00 2537 155 0.1689 0.1985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94450 REMARK 3 B22 (A**2) : -1.07690 REMARK 3 B33 (A**2) : 0.13240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2384 REMARK 3 ANGLE : 1.051 3252 REMARK 3 CHIRALITY : 0.074 350 REMARK 3 PLANARITY : 0.005 423 REMARK 3 DIHEDRAL : 15.138 875 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9907 47.1003 19.3508 REMARK 3 T TENSOR REMARK 3 T11: 0.0371 T22: 0.0947 REMARK 3 T33: 0.1960 T12: 0.0071 REMARK 3 T13: -0.0091 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 4.7912 L22: 1.0673 REMARK 3 L33: 3.0561 L12: 0.3102 REMARK 3 L13: -1.7597 L23: -0.2478 REMARK 3 S TENSOR REMARK 3 S11: -0.1303 S12: -0.2298 S13: -0.6719 REMARK 3 S21: 0.0547 S22: -0.2268 S23: -0.6703 REMARK 3 S31: 0.2254 S32: 0.3344 S33: 0.0329 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 13:24) REMARK 3 ORIGIN FOR THE GROUP (A): 51.8340 58.0456 12.2606 REMARK 3 T TENSOR REMARK 3 T11: 0.1109 T22: 0.0847 REMARK 3 T33: 0.1739 T12: 0.0034 REMARK 3 T13: -0.0185 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 0.1240 L22: 2.8030 REMARK 3 L33: 0.2610 L12: -0.1095 REMARK 3 L13: -0.1634 L23: 0.5696 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: -0.0429 S13: -0.1884 REMARK 3 S21: -0.2695 S22: -0.0036 S23: -0.0430 REMARK 3 S31: 0.0008 S32: 0.0635 S33: 0.0318 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 25:35) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5358 48.5937 8.3656 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.0762 REMARK 3 T33: 0.0698 T12: -0.0177 REMARK 3 T13: -0.0140 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 6.8758 L22: 3.1105 REMARK 3 L33: 6.0002 L12: -0.1466 REMARK 3 L13: -3.2254 L23: -1.9240 REMARK 3 S TENSOR REMARK 3 S11: -0.2141 S12: 0.1829 S13: -0.1220 REMARK 3 S21: -0.5257 S22: 0.0638 S23: 0.0228 REMARK 3 S31: 0.0249 S32: -0.1852 S33: 0.0840 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 36:62) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0412 57.3515 18.0781 REMARK 3 T TENSOR REMARK 3 T11: 0.0628 T22: 0.0981 REMARK 3 T33: 0.0593 T12: -0.0001 REMARK 3 T13: -0.0026 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.8531 L22: 1.6195 REMARK 3 L33: 1.1671 L12: -0.0910 REMARK 3 L13: -0.1634 L23: -0.1724 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.0774 S13: 0.0814 REMARK 3 S21: 0.0526 S22: 0.0521 S23: 0.1138 REMARK 3 S31: -0.0414 S32: -0.1519 S33: -0.0688 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 63:72) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7810 65.0763 25.1452 REMARK 3 T TENSOR REMARK 3 T11: 0.1698 T22: 0.1778 REMARK 3 T33: 0.1202 T12: 0.0557 REMARK 3 T13: 0.0211 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.0973 L22: 2.7898 REMARK 3 L33: 7.7162 L12: 0.8616 REMARK 3 L13: 2.0847 L23: -1.1240 REMARK 3 S TENSOR REMARK 3 S11: -0.1614 S12: -0.3999 S13: 0.4674 REMARK 3 S21: 0.2854 S22: 0.1309 S23: 0.1263 REMARK 3 S31: -0.5574 S32: -0.3231 S33: -0.0034 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 73:85) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5930 54.3408 29.7607 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.1743 REMARK 3 T33: 0.0866 T12: 0.0148 REMARK 3 T13: 0.0334 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 1.5499 L22: 2.9346 REMARK 3 L33: 2.5350 L12: -0.2845 REMARK 3 L13: 0.7832 L23: -1.1338 REMARK 3 S TENSOR REMARK 3 S11: -0.0806 S12: -0.2568 S13: -0.2006 REMARK 3 S21: 0.4391 S22: 0.1147 S23: 0.1884 REMARK 3 S31: -0.0053 S32: -0.1442 S33: 0.0188 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 86:129) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6907 47.6718 21.8143 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.0834 REMARK 3 T33: 0.1030 T12: 0.0025 REMARK 3 T13: -0.0329 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 2.2365 L22: 2.6560 REMARK 3 L33: 2.6959 L12: -0.4473 REMARK 3 L13: -0.6115 L23: -0.0522 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: -0.2453 S13: -0.0798 REMARK 3 S21: 0.2240 S22: 0.0043 S23: -0.2436 REMARK 3 S31: 0.1326 S32: 0.2001 S33: 0.0236 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 130:141) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6440 36.9875 14.9464 REMARK 3 T TENSOR REMARK 3 T11: 0.2534 T22: 0.1076 REMARK 3 T33: 0.1906 T12: 0.0122 REMARK 3 T13: 0.0502 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 1.3941 L22: 0.9568 REMARK 3 L33: 3.6148 L12: 0.0399 REMARK 3 L13: -1.2669 L23: 0.3127 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.1782 S13: -0.1533 REMARK 3 S21: -0.2628 S22: -0.0365 S23: -0.4156 REMARK 3 S31: 0.5947 S32: 0.3626 S33: 0.0501 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 142:159) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9070 44.1818 9.1221 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.0900 REMARK 3 T33: 0.1756 T12: 0.0064 REMARK 3 T13: 0.0623 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.5850 L22: 2.5559 REMARK 3 L33: 3.2534 L12: 0.9349 REMARK 3 L13: -0.9853 L23: -1.4746 REMARK 3 S TENSOR REMARK 3 S11: -0.2057 S12: 0.0018 S13: -0.2214 REMARK 3 S21: -0.3729 S22: -0.0591 S23: -0.5418 REMARK 3 S31: 0.2420 S32: 0.0631 S33: 0.1980 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1:17) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6772 85.7324 2.5825 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.0793 REMARK 3 T33: 0.1392 T12: -0.0082 REMARK 3 T13: -0.0169 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.3778 L22: 1.8885 REMARK 3 L33: 5.2920 L12: -0.0524 REMARK 3 L13: -0.7406 L23: -0.9299 REMARK 3 S TENSOR REMARK 3 S11: -0.0861 S12: -0.0465 S13: 0.1337 REMARK 3 S21: 0.3196 S22: -0.0793 S23: -0.0301 REMARK 3 S31: -0.2673 S32: 0.1530 S33: 0.1756 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 18:24) REMARK 3 ORIGIN FOR THE GROUP (A): 54.2658 81.9664 4.1893 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.1018 REMARK 3 T33: 0.1144 T12: 0.0084 REMARK 3 T13: -0.0196 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.7037 L22: 1.4389 REMARK 3 L33: 8.2733 L12: 0.2694 REMARK 3 L13: -0.9066 L23: -0.5331 REMARK 3 S TENSOR REMARK 3 S11: -0.1939 S12: -0.1301 S13: 0.1808 REMARK 3 S21: 0.2380 S22: -0.0389 S23: -0.1116 REMARK 3 S31: 0.0265 S32: 0.1559 S33: 0.2192 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 25:32) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6300 72.7770 18.3010 REMARK 3 T TENSOR REMARK 3 T11: 0.2317 T22: 0.1518 REMARK 3 T33: 0.1030 T12: 0.0126 REMARK 3 T13: -0.0412 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 3.1641 L22: 8.9032 REMARK 3 L33: 0.1808 L12: 2.5664 REMARK 3 L13: 0.6213 L23: 1.1266 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.5014 S13: 0.1241 REMARK 3 S21: 0.6465 S22: -0.0481 S23: -0.0679 REMARK 3 S31: -0.2883 S32: -0.0421 S33: 0.0930 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 33:39) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2105 77.7839 4.6247 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.0417 REMARK 3 T33: 0.0578 T12: 0.0135 REMARK 3 T13: 0.0115 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.5066 L22: 2.3432 REMARK 3 L33: 3.7984 L12: -1.0443 REMARK 3 L13: 2.5931 L23: -2.4075 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: 0.0899 S13: 0.1577 REMARK 3 S21: 0.1695 S22: 0.0257 S23: 0.0559 REMARK 3 S31: -0.1975 S32: -0.0576 S33: 0.0100 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 40:52) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1345 77.0597 1.8029 REMARK 3 T TENSOR REMARK 3 T11: 0.0317 T22: 0.0752 REMARK 3 T33: 0.1419 T12: -0.0069 REMARK 3 T13: -0.0169 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 1.7440 L22: 1.6514 REMARK 3 L33: 0.1897 L12: -1.0620 REMARK 3 L13: 0.0360 L23: 0.0741 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: 0.1560 S13: 0.3712 REMARK 3 S21: -0.1074 S22: -0.0017 S23: 0.0592 REMARK 3 S31: 0.0310 S32: -0.0600 S33: 0.0464 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 53:60) REMARK 3 ORIGIN FOR THE GROUP (A): 51.8654 67.5723 5.5496 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.0552 REMARK 3 T33: 0.0796 T12: 0.0082 REMARK 3 T13: -0.0090 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.9885 L22: 0.7543 REMARK 3 L33: 3.6958 L12: 0.0571 REMARK 3 L13: 1.5807 L23: 0.0744 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: 0.1054 S13: -0.0488 REMARK 3 S21: 0.0452 S22: 0.0100 S23: -0.0704 REMARK 3 S31: 0.1642 S32: 0.1872 S33: -0.0990 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 61:73) REMARK 3 ORIGIN FOR THE GROUP (A): 50.2066 72.6154 -2.1669 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.0656 REMARK 3 T33: 0.0933 T12: -0.0111 REMARK 3 T13: -0.0058 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.6416 L22: 1.4539 REMARK 3 L33: 3.7742 L12: -1.3985 REMARK 3 L13: 0.4504 L23: -1.4523 REMARK 3 S TENSOR REMARK 3 S11: 0.1282 S12: 0.2663 S13: -0.1257 REMARK 3 S21: -0.1262 S22: 0.0137 S23: 0.0895 REMARK 3 S31: 0.1962 S32: 0.1164 S33: -0.1562 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 74:83) REMARK 3 ORIGIN FOR THE GROUP (A): 56.7214 77.4934 5.9206 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.1379 REMARK 3 T33: 0.1003 T12: 0.0025 REMARK 3 T13: -0.0109 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.4727 L22: 1.7865 REMARK 3 L33: 4.3990 L12: -0.2748 REMARK 3 L13: 1.4982 L23: -0.9011 REMARK 3 S TENSOR REMARK 3 S11: 0.1089 S12: -0.1330 S13: 0.1736 REMARK 3 S21: 0.3053 S22: 0.1365 S23: -0.1287 REMARK 3 S31: -0.3996 S32: 0.2718 S33: -0.1358 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 84:99) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8371 81.0828 -2.1422 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.0841 REMARK 3 T33: 0.1046 T12: -0.0124 REMARK 3 T13: -0.0059 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.1985 L22: 1.5788 REMARK 3 L33: 2.9997 L12: -0.4071 REMARK 3 L13: -0.5547 L23: -1.5406 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: 0.1428 S13: -0.0014 REMARK 3 S21: 0.0657 S22: 0.0665 S23: 0.0416 REMARK 3 S31: -0.1369 S32: -0.1680 S33: -0.1281 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 100:113) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5790 68.8130 9.5583 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0762 REMARK 3 T33: 0.1013 T12: -0.0119 REMARK 3 T13: 0.0035 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.8345 L22: 3.1050 REMARK 3 L33: 3.4443 L12: -0.3787 REMARK 3 L13: 0.1667 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: -0.1239 S13: -0.1372 REMARK 3 S21: 0.0323 S22: 0.1072 S23: 0.2835 REMARK 3 S31: 0.0384 S32: -0.2140 S33: -0.1313 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 114:120) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3591 79.9289 13.1038 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.1227 REMARK 3 T33: 0.1057 T12: -0.0101 REMARK 3 T13: 0.0419 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 4.5339 L22: 6.9933 REMARK 3 L33: 3.7293 L12: 1.3432 REMARK 3 L13: 1.1929 L23: 0.6232 REMARK 3 S TENSOR REMARK 3 S11: 0.1171 S12: -0.5569 S13: -0.0220 REMARK 3 S21: 0.5062 S22: -0.1312 S23: 0.3581 REMARK 3 S31: 0.1062 S32: -0.1259 S33: 0.0055 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 121:128) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5460 88.8460 -5.7712 REMARK 3 T TENSOR REMARK 3 T11: 0.1301 T22: 0.1361 REMARK 3 T33: 0.1508 T12: 0.0233 REMARK 3 T13: 0.0043 T23: 0.0804 REMARK 3 L TENSOR REMARK 3 L11: 3.6702 L22: 5.0969 REMARK 3 L33: 2.6595 L12: 0.1486 REMARK 3 L13: 0.4092 L23: -1.6303 REMARK 3 S TENSOR REMARK 3 S11: 0.1731 S12: 0.3950 S13: 0.2724 REMARK 3 S21: -0.1371 S22: -0.2168 S23: 0.1820 REMARK 3 S31: -0.5636 S32: 0.0474 S33: -0.0270 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44517 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% W/V PEG 1500, 10% V/V MPD, 50MM REMARK 280 PIPES, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.19000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.19000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 98 NH1 REMARK 470 GLU A 120 CB CG CD OE1 OE2 REMARK 470 ASP A 127 OD1 OD2 REMARK 470 GLN B 1 CB CG CD OE1 NE2 REMARK 470 LYS B 76 CE NZ REMARK 470 ASN B 112 ND2 REMARK 470 HIS B 128 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 101 O HOH A 504 2.18 REMARK 500 O HOH B 303 O HOH B 310 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 26 O HOH A 409 3755 2.10 REMARK 500 O HOH A 490 O HOH B 353 3745 2.13 REMARK 500 O HOH A 375 O HOH B 263 4475 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 FOL A 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOL A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I1N RELATED DB: PDB DBREF 4I13 A 1 159 UNP P0ABQ4 DYR_ECOLI 1 159 DBREF 4I13 B 1 133 PDB 4I13 4I13 1 133 SEQRES 1 A 159 MET ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG VAL SEQRES 2 A 159 ILE GLY MET GLU ASN ALA MET PRO TRP ASN LEU PRO ALA SEQRES 3 A 159 ASP LEU ALA TRP PHE LYS ARG ASN THR LEU ASN LYS PRO SEQRES 4 A 159 VAL ILE MET GLY ARG HIS THR TRP GLU SER ILE GLY ARG SEQRES 5 A 159 PRO LEU PRO GLY ARG LYS ASN ILE ILE LEU SER SER GLN SEQRES 6 A 159 PRO GLY THR ASP ASP ARG VAL THR TRP VAL LYS SER VAL SEQRES 7 A 159 ASP GLU ALA ILE ALA ALA CYS GLY ASP VAL PRO GLU ILE SEQRES 8 A 159 MET VAL ILE GLY GLY GLY ARG VAL TYR GLU GLN PHE LEU SEQRES 9 A 159 PRO LYS ALA GLN LYS LEU TYR LEU THR HIS ILE ASP ALA SEQRES 10 A 159 GLU VAL GLU GLY ASP THR HIS PHE PRO ASP TYR GLU PRO SEQRES 11 A 159 ASP ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA SEQRES 12 A 159 ASP ALA GLN ASN SER HIS SER TYR CYS PHE GLU ILE LEU SEQRES 13 A 159 GLU ARG ARG SEQRES 1 B 133 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 133 ALA GLY ALA SER LEU ARG LEU SER CYS ALA ALA SER GLU SEQRES 3 B 133 ARG LEU THR VAL ASP TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 B 133 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE SER SEQRES 5 B 133 TRP GLY GLY GLY LEU THR VAL TYR GLY GLU SER VAL GLU SEQRES 6 B 133 GLY ARG PHE THR ILE SER ARG ASP ILE ALA LYS ASN THR SEQRES 7 B 133 MET ASN LEU GLN MET ASN VAL LEU ARG PRO GLU ASP THR SEQRES 8 B 133 ALA ASN TYR TYR CYS ALA ALA SER ARG ILE SER TYR ARG SEQRES 9 B 133 VAL TRP ASN THR ILE PRO TYR ASN LYS LEU THR LEU TRP SEQRES 10 B 133 GLY ARG GLY THR GLN VAL THR VAL SER SER HIS HIS HIS SEQRES 11 B 133 HIS HIS HIS HET FOL A 201 32 HETNAM FOL FOLIC ACID FORMUL 3 FOL C19 H19 N7 O6 FORMUL 4 HOH *384(H2 O) HELIX 1 1 ALA A 9 VAL A 13 5 5 HELIX 2 2 LEU A 24 LEU A 36 1 13 HELIX 3 3 ARG A 44 GLY A 51 1 8 HELIX 4 4 SER A 77 GLY A 86 1 10 HELIX 5 5 GLY A 96 LEU A 104 1 9 HELIX 6 6 PRO A 105 ALA A 107 5 3 HELIX 7 7 GLU A 129 ASP A 131 5 3 HELIX 8 8 ARG B 87 THR B 91 5 5 HELIX 9 9 SER B 102 TRP B 106 5 5 HELIX 10 10 PRO B 110 LEU B 114 5 5 SHEET 1 A 8 THR A 73 VAL A 75 0 SHEET 2 A 8 ASN A 59 LEU A 62 1 N ILE A 61 O THR A 73 SHEET 3 A 8 VAL A 40 GLY A 43 1 N MET A 42 O LEU A 62 SHEET 4 A 8 ILE A 91 VAL A 93 1 O MET A 92 N ILE A 41 SHEET 5 A 8 ILE A 2 LEU A 8 1 N SER A 3 O VAL A 93 SHEET 6 A 8 LYS A 109 ILE A 115 1 O ILE A 115 N LEU A 8 SHEET 7 A 8 TYR A 151 ARG A 158 -1 O CYS A 152 N HIS A 114 SHEET 8 A 8 TRP A 133 HIS A 141 -1 N HIS A 141 O TYR A 151 SHEET 1 B 4 LEU B 4 SER B 7 0 SHEET 2 B 4 LEU B 18 ALA B 24 -1 O ALA B 23 N GLN B 5 SHEET 3 B 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 B 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 C 6 GLY B 10 GLN B 13 0 SHEET 2 C 6 THR B 121 SER B 126 1 O THR B 124 N GLY B 10 SHEET 3 C 6 ALA B 92 SER B 99 -1 N TYR B 94 O THR B 121 SHEET 4 C 6 ALA B 33 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 C 6 GLU B 46 SER B 52 -1 O ALA B 49 N TRP B 36 SHEET 6 C 6 THR B 58 TYR B 60 -1 O VAL B 59 N ALA B 50 SHEET 1 D 4 GLY B 10 GLN B 13 0 SHEET 2 D 4 THR B 121 SER B 126 1 O THR B 124 N GLY B 10 SHEET 3 D 4 ALA B 92 SER B 99 -1 N TYR B 94 O THR B 121 SHEET 4 D 4 LEU B 116 TRP B 117 -1 O LEU B 116 N ALA B 98 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.05 CISPEP 1 GLY A 95 GLY A 96 0 7.07 SITE 1 AC1 16 ILE A 5 ALA A 6 ALA A 7 ASP A 27 SITE 2 AC1 16 LEU A 28 PHE A 31 LYS A 32 ARG A 57 SITE 3 AC1 16 ILE A 94 TYR A 100 THR A 113 HOH A 306 SITE 4 AC1 16 HOH A 351 HOH A 386 HOH A 398 ARG B 104 CRYST1 49.760 58.050 114.380 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008743 0.00000