data_4I17 # _entry.id 4I17 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4I17 pdb_00004i17 10.2210/pdb4i17/pdb RCSB RCSB076175 ? ? WWPDB D_1000076175 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-390107 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4I17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-11-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BF2334) from Bacteroides fragilis NCTC 9343 at 1.50 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4I17 _cell.length_a 59.233 _cell.length_b 60.576 _cell.length_c 61.033 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4I17 _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein' 25606.291 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 111 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GAQTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYI GKSAAYRD(MSE)KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL YSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ(MSE)QDQVKA(MSE)IK ; _entity_poly.pdbx_seq_one_letter_code_can ;GAQTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYI GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMIK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-390107 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 GLN n 1 4 THR n 1 5 THR n 1 6 ASP n 1 7 PRO n 1 8 ASN n 1 9 GLN n 1 10 LEU n 1 11 LYS n 1 12 ASN n 1 13 GLU n 1 14 GLY n 1 15 ASN n 1 16 ASP n 1 17 ALA n 1 18 LEU n 1 19 ASN n 1 20 ALA n 1 21 LYS n 1 22 ASN n 1 23 TYR n 1 24 ALA n 1 25 VAL n 1 26 ALA n 1 27 PHE n 1 28 GLU n 1 29 LYS n 1 30 TYR n 1 31 SER n 1 32 GLU n 1 33 TYR n 1 34 LEU n 1 35 LYS n 1 36 LEU n 1 37 THR n 1 38 ASN n 1 39 ASN n 1 40 GLN n 1 41 ASP n 1 42 SER n 1 43 VAL n 1 44 THR n 1 45 ALA n 1 46 TYR n 1 47 ASN n 1 48 CYS n 1 49 GLY n 1 50 VAL n 1 51 CYS n 1 52 ALA n 1 53 ASP n 1 54 ASN n 1 55 ILE n 1 56 LYS n 1 57 LYS n 1 58 TYR n 1 59 LYS n 1 60 GLU n 1 61 ALA n 1 62 ALA n 1 63 ASP n 1 64 TYR n 1 65 PHE n 1 66 ASP n 1 67 ILE n 1 68 ALA n 1 69 ILE n 1 70 LYS n 1 71 LYS n 1 72 ASN n 1 73 TYR n 1 74 ASN n 1 75 LEU n 1 76 ALA n 1 77 ASN n 1 78 ALA n 1 79 TYR n 1 80 ILE n 1 81 GLY n 1 82 LYS n 1 83 SER n 1 84 ALA n 1 85 ALA n 1 86 TYR n 1 87 ARG n 1 88 ASP n 1 89 MSE n 1 90 LYS n 1 91 ASN n 1 92 ASN n 1 93 GLN n 1 94 GLU n 1 95 TYR n 1 96 ILE n 1 97 ALA n 1 98 THR n 1 99 LEU n 1 100 THR n 1 101 GLU n 1 102 GLY n 1 103 ILE n 1 104 LYS n 1 105 ALA n 1 106 VAL n 1 107 PRO n 1 108 GLY n 1 109 ASN n 1 110 ALA n 1 111 THR n 1 112 ILE n 1 113 GLU n 1 114 LYS n 1 115 LEU n 1 116 TYR n 1 117 ALA n 1 118 ILE n 1 119 TYR n 1 120 TYR n 1 121 LEU n 1 122 LYS n 1 123 GLU n 1 124 GLY n 1 125 GLN n 1 126 LYS n 1 127 PHE n 1 128 GLN n 1 129 GLN n 1 130 ALA n 1 131 GLY n 1 132 ASN n 1 133 ILE n 1 134 GLU n 1 135 LYS n 1 136 ALA n 1 137 GLU n 1 138 GLU n 1 139 ASN n 1 140 TYR n 1 141 LYS n 1 142 HIS n 1 143 ALA n 1 144 THR n 1 145 ASP n 1 146 VAL n 1 147 THR n 1 148 SER n 1 149 LYS n 1 150 LYS n 1 151 TRP n 1 152 LYS n 1 153 THR n 1 154 ASP n 1 155 ALA n 1 156 LEU n 1 157 TYR n 1 158 SER n 1 159 LEU n 1 160 GLY n 1 161 VAL n 1 162 LEU n 1 163 PHE n 1 164 TYR n 1 165 ASN n 1 166 ASN n 1 167 GLY n 1 168 ALA n 1 169 ASP n 1 170 VAL n 1 171 LEU n 1 172 ARG n 1 173 LYS n 1 174 ALA n 1 175 THR n 1 176 PRO n 1 177 LEU n 1 178 ALA n 1 179 SER n 1 180 SER n 1 181 ASN n 1 182 LYS n 1 183 GLU n 1 184 LYS n 1 185 TYR n 1 186 ALA n 1 187 SER n 1 188 GLU n 1 189 LYS n 1 190 ALA n 1 191 LYS n 1 192 ALA n 1 193 ASP n 1 194 ALA n 1 195 ALA n 1 196 PHE n 1 197 LYS n 1 198 LYS n 1 199 ALA n 1 200 VAL n 1 201 ASP n 1 202 TYR n 1 203 LEU n 1 204 GLY n 1 205 GLU n 1 206 ALA n 1 207 VAL n 1 208 THR n 1 209 LEU n 1 210 SER n 1 211 PRO n 1 212 ASN n 1 213 ARG n 1 214 THR n 1 215 GLU n 1 216 ILE n 1 217 LYS n 1 218 GLN n 1 219 MSE n 1 220 GLN n 1 221 ASP n 1 222 GLN n 1 223 VAL n 1 224 LYS n 1 225 ALA n 1 226 MSE n 1 227 ILE n 1 228 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BF2334, BF9343_2249, YP_211956.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LCY3_BACFN _struct_ref.pdbx_db_accession Q5LCY3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AQTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMIK ; _struct_ref.pdbx_align_begin 19 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4I17 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 228 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LCY3 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 245 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 19 _struct_ref_seq.pdbx_auth_seq_align_end 245 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4I17 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5LCY3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4I17 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.pdbx_details '2.6M ammonium sulfate, 0.1M MES pH 5.43, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.pH 5.43 # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.details 'KOHZU: Double Crystal Si(111)' _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-09-19 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979111 1.0 2 0.979338 1.0 3 0.953725 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength_list 0.979111,0.979338,0.953725 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 4I17 _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 27.153 _reflns.number_obs 33966 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_netI_over_sigmaI 13.650 _reflns.percent_possible_obs 94.600 _reflns.B_iso_Wilson_estimate 22.734 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.500 1.550 22103 ? 5487 0.841 2.0 ? ? ? ? ? 85.600 1 1 1.550 1.620 31689 ? 7577 0.672 2.6 ? ? ? ? ? 98.800 2 1 1.620 1.690 27131 ? 6418 0.512 3.3 ? ? ? ? ? 98.300 3 1 1.690 1.780 28546 ? 6717 0.362 4.6 ? ? ? ? ? 98.200 4 1 1.780 1.890 28252 ? 6565 0.240 6.7 ? ? ? ? ? 97.500 5 1 1.890 2.040 29320 ? 6791 0.134 11.1 ? ? ? ? ? 96.700 6 1 2.040 2.240 27454 ? 6336 0.078 17.1 ? ? ? ? ? 95.700 7 1 2.240 2.560 27943 ? 6411 0.057 22.3 ? ? ? ? ? 94.400 8 1 2.560 3.230 27662 ? 6349 0.041 29.4 ? ? ? ? ? 92.100 9 1 3.230 ? 28573 ? 6077 0.029 39.9 ? ? ? ? ? 88.300 10 1 # _refine.ls_percent_reflns_R_free 5.1500 _refine.overall_SU_B ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4I17 _refine.aniso_B[2][3] 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML ? _refine.pdbx_ls_sigma_I ? _refine.aniso_B[1][3] 0.0000 _refine.pdbx_stereochemistry_target_values ? _refine.aniso_B[3][3] -3.7242 _refine.occupancy_max 1.000 _refine.ls_number_restraints ? _refine.aniso_B[1][1] 2.9887 _refine.pdbx_overall_ESU_R ? _refine.ls_R_factor_obs 0.1624 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct MAD _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_shrinkage_radii ? _refine.correlation_coeff_Fo_to_Fc 0.9592 _refine.ls_number_reflns_R_free 952 _refine.correlation_coeff_Fo_to_Fc_free 0.9530 _refine.pdbx_ls_sigma_F 0.000 _refine.ls_percent_reflns_obs 92.5700 _refine.ls_R_factor_R_work 0.1614 _refine.overall_SU_R_free ? _refine.ls_d_res_high 1.8300 _refine.pdbx_overall_ESU_R_Free ? _refine.B_iso_min 13.380 _refine.occupancy_min 0.250 _refine.B_iso_mean 29.8652 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] 0.7355 _refine.B_iso_max 92.150 _refine.ls_d_res_low 27.153 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details ? _refine.aniso_B[1][2] 0.0000 _refine.ls_R_factor_R_free 0.1811 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 18472 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ;OTHER REFINEMENT REMARKS: 1. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ETHYLENE GLYCOL (GOL) FROM THE CRYOPROTECTANT AND AMMONIUM SULPHATE IONS FROM THE CRYSTALLIZATION CONDITION HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. 4. TWO N-TERMINAL AND ONE C-TERMINAL RESIDUES ARE DISORDERED. 5. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. ; _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4I17 _refine_analyze.Luzzati_coordinate_error_obs 0.175 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1756 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1888 _refine_hist.d_res_high 1.8300 _refine_hist.d_res_low 27.153 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 974 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 67 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 295 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1956 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 259 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2458 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1956 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2669 0.940 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 2.580 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.910 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.8300 _refine_ls_shell.d_res_low 1.9400 _refine_ls_shell.pdbx_total_number_of_bins_used 9 _refine_ls_shell.percent_reflns_obs 92.5700 _refine_ls_shell.number_reflns_R_work 2881 _refine_ls_shell.R_factor_all 0.1717 _refine_ls_shell.R_factor_R_work 0.1696 _refine_ls_shell.R_factor_R_free 0.2092 _refine_ls_shell.percent_reflns_R_free 5.2300 _refine_ls_shell.number_reflns_R_free 159 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3040 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a TPR repeats protein (BF2334) from Bacteroides fragilis NCTC 9343 at 1.50 A resolution' _struct.entry_id 4I17 _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.text ;TPR repeats protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.entry_id 4I17 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 6 ? ALA A 20 ? ASP A 23 ALA A 37 1 ? 15 HELX_P HELX_P2 2 ASN A 22 ? THR A 37 ? ASN A 39 THR A 54 1 ? 16 HELX_P HELX_P3 3 ASP A 41 ? ILE A 55 ? ASP A 58 ILE A 72 1 ? 15 HELX_P HELX_P4 4 LYS A 57 ? LYS A 71 ? LYS A 74 LYS A 88 1 ? 15 HELX_P HELX_P5 5 ASN A 74 ? MSE A 89 ? ASN A 91 MSE A 106 1 ? 16 HELX_P HELX_P6 6 ASN A 91 ? VAL A 106 ? ASN A 108 VAL A 123 1 ? 16 HELX_P HELX_P7 7 ASN A 109 ? ALA A 130 ? ASN A 126 ALA A 147 1 ? 22 HELX_P HELX_P8 8 ASN A 132 ? THR A 144 ? ASN A 149 THR A 161 1 ? 13 HELX_P HELX_P9 9 SER A 148 ? THR A 175 ? SER A 165 THR A 192 1 ? 28 HELX_P HELX_P10 10 PRO A 176 ? ALA A 178 ? PRO A 193 ALA A 195 5 ? 3 HELX_P HELX_P11 11 ASN A 181 ? SER A 210 ? ASN A 198 SER A 227 1 ? 30 HELX_P HELX_P12 12 ARG A 213 ? ALA A 225 ? ARG A 230 ALA A 242 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 88 C ? ? ? 1_555 A MSE 89 N ? ? A ASP 105 A MSE 106 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale2 covale both ? A MSE 89 C ? ? ? 1_555 A LYS 90 N ? ? A MSE 106 A LYS 107 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale3 covale both ? A GLN 218 C ? ? ? 1_555 A MSE 219 N ? ? A GLN 235 A MSE 236 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A MSE 219 C ? ? ? 1_555 A GLN 220 N ? ? A MSE 236 A GLN 237 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale5 covale both ? A ALA 225 C ? ? ? 1_555 A MSE 226 N ? ? A ALA 242 A MSE 243 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale6 covale both ? A MSE 226 C ? ? ? 1_555 A ILE 227 N ? ? A MSE 243 A ILE 244 1_555 ? ? ? ? ? ? ? 1.323 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 301 ? 6 'BINDING SITE FOR RESIDUE SO4 A 301' AC2 Software A SO4 302 ? 8 'BINDING SITE FOR RESIDUE SO4 A 302' AC3 Software A SO4 303 ? 3 'BINDING SITE FOR RESIDUE SO4 A 303' AC4 Software A GOL 304 ? 3 'BINDING SITE FOR RESIDUE GOL A 304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 150 ? LYS A 167 . ? 1_555 ? 2 AC1 6 ARG A 172 ? ARG A 189 . ? 4_465 ? 3 AC1 6 LYS A 173 ? LYS A 190 . ? 4_465 ? 4 AC1 6 ASN A 212 ? ASN A 229 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 416 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 458 . ? 1_555 ? 7 AC2 8 LYS A 21 ? LYS A 38 . ? 1_555 ? 8 AC2 8 ASN A 22 ? ASN A 39 . ? 1_555 ? 9 AC2 8 TYR A 23 ? TYR A 40 . ? 1_555 ? 10 AC2 8 ALA A 24 ? ALA A 41 . ? 1_555 ? 11 AC2 8 SER A 187 ? SER A 204 . ? 2_665 ? 12 AC2 8 HOH F . ? HOH A 435 . ? 2_665 ? 13 AC2 8 HOH F . ? HOH A 450 . ? 1_555 ? 14 AC2 8 HOH F . ? HOH A 507 . ? 2_665 ? 15 AC3 3 SER A 148 ? SER A 165 . ? 1_555 ? 16 AC3 3 LYS A 149 ? LYS A 166 . ? 1_555 ? 17 AC3 3 LYS A 150 ? LYS A 167 . ? 1_555 ? 18 AC4 3 LYS A 56 ? LYS A 73 . ? 1_555 ? 19 AC4 3 TYR A 58 ? TYR A 75 . ? 1_555 ? 20 AC4 3 LYS A 198 ? LYS A 215 . ? 2_665 ? # _atom_sites.entry_id 4I17 _atom_sites.fract_transf_matrix[1][1] 0.016882 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016508 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016385 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ALA 2 19 ? ? ? A . n A 1 3 GLN 3 20 ? ? ? A . n A 1 4 THR 4 21 21 THR THR A . n A 1 5 THR 5 22 22 THR THR A . n A 1 6 ASP 6 23 23 ASP ASP A . n A 1 7 PRO 7 24 24 PRO PRO A . n A 1 8 ASN 8 25 25 ASN ASN A . n A 1 9 GLN 9 26 26 GLN GLN A . n A 1 10 LEU 10 27 27 LEU LEU A . n A 1 11 LYS 11 28 28 LYS LYS A . n A 1 12 ASN 12 29 29 ASN ASN A . n A 1 13 GLU 13 30 30 GLU GLU A . n A 1 14 GLY 14 31 31 GLY GLY A . n A 1 15 ASN 15 32 32 ASN ASN A . n A 1 16 ASP 16 33 33 ASP ASP A . n A 1 17 ALA 17 34 34 ALA ALA A . n A 1 18 LEU 18 35 35 LEU LEU A . n A 1 19 ASN 19 36 36 ASN ASN A . n A 1 20 ALA 20 37 37 ALA ALA A . n A 1 21 LYS 21 38 38 LYS LYS A . n A 1 22 ASN 22 39 39 ASN ASN A . n A 1 23 TYR 23 40 40 TYR TYR A . n A 1 24 ALA 24 41 41 ALA ALA A . n A 1 25 VAL 25 42 42 VAL VAL A . n A 1 26 ALA 26 43 43 ALA ALA A . n A 1 27 PHE 27 44 44 PHE PHE A . n A 1 28 GLU 28 45 45 GLU GLU A . n A 1 29 LYS 29 46 46 LYS LYS A . n A 1 30 TYR 30 47 47 TYR TYR A . n A 1 31 SER 31 48 48 SER SER A . n A 1 32 GLU 32 49 49 GLU GLU A . n A 1 33 TYR 33 50 50 TYR TYR A . n A 1 34 LEU 34 51 51 LEU LEU A . n A 1 35 LYS 35 52 52 LYS LYS A . n A 1 36 LEU 36 53 53 LEU LEU A . n A 1 37 THR 37 54 54 THR THR A . n A 1 38 ASN 38 55 55 ASN ASN A . n A 1 39 ASN 39 56 56 ASN ASN A . n A 1 40 GLN 40 57 57 GLN GLN A . n A 1 41 ASP 41 58 58 ASP ASP A . n A 1 42 SER 42 59 59 SER SER A . n A 1 43 VAL 43 60 60 VAL VAL A . n A 1 44 THR 44 61 61 THR THR A . n A 1 45 ALA 45 62 62 ALA ALA A . n A 1 46 TYR 46 63 63 TYR TYR A . n A 1 47 ASN 47 64 64 ASN ASN A . n A 1 48 CYS 48 65 65 CYS CYS A . n A 1 49 GLY 49 66 66 GLY GLY A . n A 1 50 VAL 50 67 67 VAL VAL A . n A 1 51 CYS 51 68 68 CYS CYS A . n A 1 52 ALA 52 69 69 ALA ALA A . n A 1 53 ASP 53 70 70 ASP ASP A . n A 1 54 ASN 54 71 71 ASN ASN A . n A 1 55 ILE 55 72 72 ILE ILE A . n A 1 56 LYS 56 73 73 LYS LYS A . n A 1 57 LYS 57 74 74 LYS LYS A . n A 1 58 TYR 58 75 75 TYR TYR A . n A 1 59 LYS 59 76 76 LYS LYS A . n A 1 60 GLU 60 77 77 GLU GLU A . n A 1 61 ALA 61 78 78 ALA ALA A . n A 1 62 ALA 62 79 79 ALA ALA A . n A 1 63 ASP 63 80 80 ASP ASP A . n A 1 64 TYR 64 81 81 TYR TYR A . n A 1 65 PHE 65 82 82 PHE PHE A . n A 1 66 ASP 66 83 83 ASP ASP A . n A 1 67 ILE 67 84 84 ILE ILE A . n A 1 68 ALA 68 85 85 ALA ALA A . n A 1 69 ILE 69 86 86 ILE ILE A . n A 1 70 LYS 70 87 87 LYS LYS A . n A 1 71 LYS 71 88 88 LYS LYS A . n A 1 72 ASN 72 89 89 ASN ASN A . n A 1 73 TYR 73 90 90 TYR TYR A . n A 1 74 ASN 74 91 91 ASN ASN A . n A 1 75 LEU 75 92 92 LEU LEU A . n A 1 76 ALA 76 93 93 ALA ALA A . n A 1 77 ASN 77 94 94 ASN ASN A . n A 1 78 ALA 78 95 95 ALA ALA A . n A 1 79 TYR 79 96 96 TYR TYR A . n A 1 80 ILE 80 97 97 ILE ILE A . n A 1 81 GLY 81 98 98 GLY GLY A . n A 1 82 LYS 82 99 99 LYS LYS A . n A 1 83 SER 83 100 100 SER SER A . n A 1 84 ALA 84 101 101 ALA ALA A . n A 1 85 ALA 85 102 102 ALA ALA A . n A 1 86 TYR 86 103 103 TYR TYR A . n A 1 87 ARG 87 104 104 ARG ARG A . n A 1 88 ASP 88 105 105 ASP ASP A . n A 1 89 MSE 89 106 106 MSE MSE A . n A 1 90 LYS 90 107 107 LYS LYS A . n A 1 91 ASN 91 108 108 ASN ASN A . n A 1 92 ASN 92 109 109 ASN ASN A . n A 1 93 GLN 93 110 110 GLN GLN A . n A 1 94 GLU 94 111 111 GLU GLU A . n A 1 95 TYR 95 112 112 TYR TYR A . n A 1 96 ILE 96 113 113 ILE ILE A . n A 1 97 ALA 97 114 114 ALA ALA A . n A 1 98 THR 98 115 115 THR THR A . n A 1 99 LEU 99 116 116 LEU LEU A . n A 1 100 THR 100 117 117 THR THR A . n A 1 101 GLU 101 118 118 GLU GLU A . n A 1 102 GLY 102 119 119 GLY GLY A . n A 1 103 ILE 103 120 120 ILE ILE A . n A 1 104 LYS 104 121 121 LYS LYS A . n A 1 105 ALA 105 122 122 ALA ALA A . n A 1 106 VAL 106 123 123 VAL VAL A . n A 1 107 PRO 107 124 124 PRO PRO A . n A 1 108 GLY 108 125 125 GLY GLY A . n A 1 109 ASN 109 126 126 ASN ASN A . n A 1 110 ALA 110 127 127 ALA ALA A . n A 1 111 THR 111 128 128 THR THR A . n A 1 112 ILE 112 129 129 ILE ILE A . n A 1 113 GLU 113 130 130 GLU GLU A . n A 1 114 LYS 114 131 131 LYS LYS A . n A 1 115 LEU 115 132 132 LEU LEU A . n A 1 116 TYR 116 133 133 TYR TYR A . n A 1 117 ALA 117 134 134 ALA ALA A . n A 1 118 ILE 118 135 135 ILE ILE A . n A 1 119 TYR 119 136 136 TYR TYR A . n A 1 120 TYR 120 137 137 TYR TYR A . n A 1 121 LEU 121 138 138 LEU LEU A . n A 1 122 LYS 122 139 139 LYS LYS A . n A 1 123 GLU 123 140 140 GLU GLU A . n A 1 124 GLY 124 141 141 GLY GLY A . n A 1 125 GLN 125 142 142 GLN GLN A . n A 1 126 LYS 126 143 143 LYS LYS A . n A 1 127 PHE 127 144 144 PHE PHE A . n A 1 128 GLN 128 145 145 GLN GLN A . n A 1 129 GLN 129 146 146 GLN GLN A . n A 1 130 ALA 130 147 147 ALA ALA A . n A 1 131 GLY 131 148 148 GLY GLY A . n A 1 132 ASN 132 149 149 ASN ASN A . n A 1 133 ILE 133 150 150 ILE ILE A . n A 1 134 GLU 134 151 151 GLU GLU A . n A 1 135 LYS 135 152 152 LYS LYS A . n A 1 136 ALA 136 153 153 ALA ALA A . n A 1 137 GLU 137 154 154 GLU GLU A . n A 1 138 GLU 138 155 155 GLU GLU A . n A 1 139 ASN 139 156 156 ASN ASN A . n A 1 140 TYR 140 157 157 TYR TYR A . n A 1 141 LYS 141 158 158 LYS LYS A . n A 1 142 HIS 142 159 159 HIS HIS A . n A 1 143 ALA 143 160 160 ALA ALA A . n A 1 144 THR 144 161 161 THR THR A . n A 1 145 ASP 145 162 162 ASP ASP A . n A 1 146 VAL 146 163 163 VAL VAL A . n A 1 147 THR 147 164 164 THR THR A . n A 1 148 SER 148 165 165 SER SER A . n A 1 149 LYS 149 166 166 LYS LYS A . n A 1 150 LYS 150 167 167 LYS LYS A . n A 1 151 TRP 151 168 168 TRP TRP A . n A 1 152 LYS 152 169 169 LYS LYS A . n A 1 153 THR 153 170 170 THR THR A . n A 1 154 ASP 154 171 171 ASP ASP A . n A 1 155 ALA 155 172 172 ALA ALA A . n A 1 156 LEU 156 173 173 LEU LEU A . n A 1 157 TYR 157 174 174 TYR TYR A . n A 1 158 SER 158 175 175 SER SER A . n A 1 159 LEU 159 176 176 LEU LEU A . n A 1 160 GLY 160 177 177 GLY GLY A . n A 1 161 VAL 161 178 178 VAL VAL A . n A 1 162 LEU 162 179 179 LEU LEU A . n A 1 163 PHE 163 180 180 PHE PHE A . n A 1 164 TYR 164 181 181 TYR TYR A . n A 1 165 ASN 165 182 182 ASN ASN A . n A 1 166 ASN 166 183 183 ASN ASN A . n A 1 167 GLY 167 184 184 GLY GLY A . n A 1 168 ALA 168 185 185 ALA ALA A . n A 1 169 ASP 169 186 186 ASP ASP A . n A 1 170 VAL 170 187 187 VAL VAL A . n A 1 171 LEU 171 188 188 LEU LEU A . n A 1 172 ARG 172 189 189 ARG ARG A . n A 1 173 LYS 173 190 190 LYS LYS A . n A 1 174 ALA 174 191 191 ALA ALA A . n A 1 175 THR 175 192 192 THR THR A . n A 1 176 PRO 176 193 193 PRO PRO A . n A 1 177 LEU 177 194 194 LEU LEU A . n A 1 178 ALA 178 195 195 ALA ALA A . n A 1 179 SER 179 196 196 SER SER A . n A 1 180 SER 180 197 197 SER SER A . n A 1 181 ASN 181 198 198 ASN ASN A . n A 1 182 LYS 182 199 199 LYS LYS A . n A 1 183 GLU 183 200 200 GLU GLU A . n A 1 184 LYS 184 201 201 LYS LYS A . n A 1 185 TYR 185 202 202 TYR TYR A . n A 1 186 ALA 186 203 203 ALA ALA A . n A 1 187 SER 187 204 204 SER SER A . n A 1 188 GLU 188 205 205 GLU GLU A . n A 1 189 LYS 189 206 206 LYS LYS A . n A 1 190 ALA 190 207 207 ALA ALA A . n A 1 191 LYS 191 208 208 LYS LYS A . n A 1 192 ALA 192 209 209 ALA ALA A . n A 1 193 ASP 193 210 210 ASP ASP A . n A 1 194 ALA 194 211 211 ALA ALA A . n A 1 195 ALA 195 212 212 ALA ALA A . n A 1 196 PHE 196 213 213 PHE PHE A . n A 1 197 LYS 197 214 214 LYS LYS A . n A 1 198 LYS 198 215 215 LYS LYS A . n A 1 199 ALA 199 216 216 ALA ALA A . n A 1 200 VAL 200 217 217 VAL VAL A . n A 1 201 ASP 201 218 218 ASP ASP A . n A 1 202 TYR 202 219 219 TYR TYR A . n A 1 203 LEU 203 220 220 LEU LEU A . n A 1 204 GLY 204 221 221 GLY GLY A . n A 1 205 GLU 205 222 222 GLU GLU A . n A 1 206 ALA 206 223 223 ALA ALA A . n A 1 207 VAL 207 224 224 VAL VAL A . n A 1 208 THR 208 225 225 THR THR A . n A 1 209 LEU 209 226 226 LEU LEU A . n A 1 210 SER 210 227 227 SER SER A . n A 1 211 PRO 211 228 228 PRO PRO A . n A 1 212 ASN 212 229 229 ASN ASN A . n A 1 213 ARG 213 230 230 ARG ARG A . n A 1 214 THR 214 231 231 THR THR A . n A 1 215 GLU 215 232 232 GLU GLU A . n A 1 216 ILE 216 233 233 ILE ILE A . n A 1 217 LYS 217 234 234 LYS LYS A . n A 1 218 GLN 218 235 235 GLN GLN A . n A 1 219 MSE 219 236 236 MSE MSE A . n A 1 220 GLN 220 237 237 GLN GLN A . n A 1 221 ASP 221 238 238 ASP ASP A . n A 1 222 GLN 222 239 239 GLN GLN A . n A 1 223 VAL 223 240 240 VAL VAL A . n A 1 224 LYS 224 241 241 LYS LYS A . n A 1 225 ALA 225 242 242 ALA ALA A . n A 1 226 MSE 226 243 243 MSE MSE A . n A 1 227 ILE 227 244 244 ILE ILE A . n A 1 228 LYS 228 245 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 301 246 SO4 SO4 A . C 2 SO4 1 302 247 SO4 SO4 A . D 2 SO4 1 303 248 SO4 SO4 A . E 3 GOL 1 304 249 GOL GOL A . F 4 HOH 1 401 250 HOH HOH A . F 4 HOH 2 402 251 HOH HOH A . F 4 HOH 3 403 252 HOH HOH A . F 4 HOH 4 404 253 HOH HOH A . F 4 HOH 5 405 254 HOH HOH A . F 4 HOH 6 406 255 HOH HOH A . F 4 HOH 7 407 256 HOH HOH A . F 4 HOH 8 408 257 HOH HOH A . F 4 HOH 9 409 258 HOH HOH A . F 4 HOH 10 410 259 HOH HOH A . F 4 HOH 11 411 260 HOH HOH A . F 4 HOH 12 412 261 HOH HOH A . F 4 HOH 13 413 262 HOH HOH A . F 4 HOH 14 414 263 HOH HOH A . F 4 HOH 15 415 264 HOH HOH A . F 4 HOH 16 416 265 HOH HOH A . F 4 HOH 17 417 266 HOH HOH A . F 4 HOH 18 418 267 HOH HOH A . F 4 HOH 19 419 268 HOH HOH A . F 4 HOH 20 420 269 HOH HOH A . F 4 HOH 21 421 270 HOH HOH A . F 4 HOH 22 422 271 HOH HOH A . F 4 HOH 23 423 272 HOH HOH A . F 4 HOH 24 424 273 HOH HOH A . F 4 HOH 25 425 274 HOH HOH A . F 4 HOH 26 426 275 HOH HOH A . F 4 HOH 27 427 276 HOH HOH A . F 4 HOH 28 428 277 HOH HOH A . F 4 HOH 29 429 278 HOH HOH A . F 4 HOH 30 430 279 HOH HOH A . F 4 HOH 31 431 280 HOH HOH A . F 4 HOH 32 432 281 HOH HOH A . F 4 HOH 33 433 282 HOH HOH A . F 4 HOH 34 434 283 HOH HOH A . F 4 HOH 35 435 284 HOH HOH A . F 4 HOH 36 436 285 HOH HOH A . F 4 HOH 37 437 286 HOH HOH A . F 4 HOH 38 438 287 HOH HOH A . F 4 HOH 39 439 288 HOH HOH A . F 4 HOH 40 440 289 HOH HOH A . F 4 HOH 41 441 290 HOH HOH A . F 4 HOH 42 442 291 HOH HOH A . F 4 HOH 43 443 292 HOH HOH A . F 4 HOH 44 444 293 HOH HOH A . F 4 HOH 45 445 294 HOH HOH A . F 4 HOH 46 446 295 HOH HOH A . F 4 HOH 47 447 296 HOH HOH A . F 4 HOH 48 448 297 HOH HOH A . F 4 HOH 49 449 298 HOH HOH A . F 4 HOH 50 450 299 HOH HOH A . F 4 HOH 51 451 300 HOH HOH A . F 4 HOH 52 452 301 HOH HOH A . F 4 HOH 53 453 302 HOH HOH A . F 4 HOH 54 454 303 HOH HOH A . F 4 HOH 55 455 304 HOH HOH A . F 4 HOH 56 456 305 HOH HOH A . F 4 HOH 57 457 306 HOH HOH A . F 4 HOH 58 458 307 HOH HOH A . F 4 HOH 59 459 308 HOH HOH A . F 4 HOH 60 460 309 HOH HOH A . F 4 HOH 61 461 310 HOH HOH A . F 4 HOH 62 462 311 HOH HOH A . F 4 HOH 63 463 312 HOH HOH A . F 4 HOH 64 464 313 HOH HOH A . F 4 HOH 65 465 314 HOH HOH A . F 4 HOH 66 466 315 HOH HOH A . F 4 HOH 67 467 316 HOH HOH A . F 4 HOH 68 468 317 HOH HOH A . F 4 HOH 69 469 318 HOH HOH A . F 4 HOH 70 470 319 HOH HOH A . F 4 HOH 71 471 320 HOH HOH A . F 4 HOH 72 472 321 HOH HOH A . F 4 HOH 73 473 322 HOH HOH A . F 4 HOH 74 474 323 HOH HOH A . F 4 HOH 75 475 324 HOH HOH A . F 4 HOH 76 476 325 HOH HOH A . F 4 HOH 77 477 326 HOH HOH A . F 4 HOH 78 478 327 HOH HOH A . F 4 HOH 79 479 328 HOH HOH A . F 4 HOH 80 480 329 HOH HOH A . F 4 HOH 81 481 330 HOH HOH A . F 4 HOH 82 482 331 HOH HOH A . F 4 HOH 83 483 332 HOH HOH A . F 4 HOH 84 484 333 HOH HOH A . F 4 HOH 85 485 334 HOH HOH A . F 4 HOH 86 486 335 HOH HOH A . F 4 HOH 87 487 336 HOH HOH A . F 4 HOH 88 488 337 HOH HOH A . F 4 HOH 89 489 338 HOH HOH A . F 4 HOH 90 490 339 HOH HOH A . F 4 HOH 91 491 340 HOH HOH A . F 4 HOH 92 492 341 HOH HOH A . F 4 HOH 93 493 342 HOH HOH A . F 4 HOH 94 494 343 HOH HOH A . F 4 HOH 95 495 344 HOH HOH A . F 4 HOH 96 496 345 HOH HOH A . F 4 HOH 97 497 346 HOH HOH A . F 4 HOH 98 498 347 HOH HOH A . F 4 HOH 99 499 348 HOH HOH A . F 4 HOH 100 500 349 HOH HOH A . F 4 HOH 101 501 350 HOH HOH A . F 4 HOH 102 502 351 HOH HOH A . F 4 HOH 103 503 352 HOH HOH A . F 4 HOH 104 504 353 HOH HOH A . F 4 HOH 105 505 354 HOH HOH A . F 4 HOH 106 506 355 HOH HOH A . F 4 HOH 107 507 356 HOH HOH A . F 4 HOH 108 508 357 HOH HOH A . F 4 HOH 109 509 358 HOH HOH A . F 4 HOH 110 510 359 HOH HOH A . F 4 HOH 111 511 360 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 89 A MSE 106 ? MET SELENOMETHIONINE 2 A MSE 219 A MSE 236 ? MET SELENOMETHIONINE 3 A MSE 226 A MSE 243 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-12 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation_author.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_ref_seq_dif.details' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 21.4943 25.2109 2.0101 -0.0338 -0.0498 -0.0135 -0.0198 -0.0137 0.0157 2.2728 0.5445 0.8261 0.3042 -0.4825 -0.3138 -0.0860 0.0485 0.0375 0.0965 0.0040 -0.0170 -0.0280 0.0824 -0.0259 'X-RAY DIFFRACTION' 2 ? refined 55.3325 44.2744 -6.8552 -0.0457 -0.0268 -0.0406 0.0064 0.0019 -0.0077 3.4901 0.6175 0.6905 -0.0681 0.4375 -0.1136 0.0314 0.0360 -0.0675 0.0061 -0.0932 -0.0014 0.0080 0.0216 0.0079 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 21 A 140 '{A|21 - 140}' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 141 A 244 '{A|141 - 244}' ? ? ? ? ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'March 15, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT . ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.compound_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 19-245 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.entry_id 4I17 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 198 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -152.77 _pdbx_validate_torsion.psi 79.15 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 21 ? OG1 ? A THR 4 OG1 2 1 Y 1 A THR 21 ? CG2 ? A THR 4 CG2 3 1 Y 1 A LYS 139 ? CG ? A LYS 122 CG 4 1 Y 1 A LYS 139 ? CD ? A LYS 122 CD 5 1 Y 1 A LYS 139 ? CE ? A LYS 122 CE 6 1 Y 1 A LYS 139 ? NZ ? A LYS 122 NZ 7 1 Y 1 A LYS 199 ? CE ? A LYS 182 CE 8 1 Y 1 A LYS 199 ? NZ ? A LYS 182 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ALA 19 ? A ALA 2 3 1 Y 1 A GLN 20 ? A GLN 3 4 1 Y 1 A LYS 245 ? A LYS 228 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH #