HEADER HYDROLASE 21-NOV-12 4I1P
TITLE HUMAN MALT1 (CASPASE-IG3) IN COMPLEX WITH ACTIVITY BASED-PROBE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MUCOSA-ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION
COMPND 3 PROTEIN 1;
COMPND 4 CHAIN: A, C;
COMPND 5 FRAGMENT: UNP RESIDUES 339-719;
COMPND 6 SYNONYM: MALT LYMPHOMA-ASSOCIATED TRANSLOCATION, PARACASPASE;
COMPND 7 EC: 3.4.22.-;
COMPND 8 ENGINEERED: YES;
COMPND 9 MOL_ID: 2;
COMPND 10 MOLECULE: TETRAPEPTIDE;
COMPND 11 CHAIN: B, D;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MALT1, MLT;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 MOL_ID: 2;
SOURCE 9 SYNTHETIC: YES;
SOURCE 10 OTHER_DETAILS: SYNTHETIC PRODUCTION OF TETRAPEPTIDE
KEYWDS PROTEASE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR F.SCHLAUDERER,K.LAMMENS,K.P.HOPFNER
REVDAT 4 15-NOV-23 4I1P 1 REMARK SEQADV LINK ATOM
REVDAT 3 04-FEB-15 4I1P 1 JRNL
REVDAT 2 14-JAN-15 4I1P 1 JRNL TITLE
REVDAT 1 09-JUL-14 4I1P 0
JRNL AUTH A.C.EITELHUBER,O.VOSYKA,D.NAGEL,M.BOGNAR,D.LENZE,K.LAMMENS,
JRNL AUTH 2 F.SCHLAUDERER,D.HLAHLA,K.P.HOPFNER,G.LENZ,M.HUMMEL,
JRNL AUTH 3 S.H.VERHELST,D.KRAPPMANN
JRNL TITL ACTIVITY-BASED PROBES FOR DETECTION OF ACTIVE MALT1
JRNL TITL 2 PARACASPASE IN IMMUNE CELLS AND LYMPHOMAS.
JRNL REF CHEM.BIOL. V. 22 129 2015
JRNL REFN ISSN 1074-5521
JRNL PMID 25556945
JRNL DOI 10.1016/J.CHEMBIOL.2014.10.021
REMARK 2
REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.94
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1
REMARK 3 NUMBER OF REFLECTIONS : 27345
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.201
REMARK 3 R VALUE (WORKING SET) : 0.198
REMARK 3 FREE R VALUE : 0.245
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1368
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 43.9465 - 5.1741 0.99 2775 147 0.1782 0.2046
REMARK 3 2 5.1741 - 4.1078 0.99 2700 142 0.1618 0.1991
REMARK 3 3 4.1078 - 3.5888 1.00 2689 141 0.1772 0.2317
REMARK 3 4 3.5888 - 3.2608 1.00 2703 143 0.2005 0.2474
REMARK 3 5 3.2608 - 3.0272 1.00 2676 141 0.2327 0.2921
REMARK 3 6 3.0272 - 2.8487 0.99 2679 142 0.2497 0.3332
REMARK 3 7 2.8487 - 2.7061 1.00 2677 139 0.2527 0.3027
REMARK 3 8 2.7061 - 2.5883 0.99 2670 140 0.2646 0.3576
REMARK 3 9 2.5883 - 2.4887 0.90 2405 127 0.2921 0.3200
REMARK 3 10 2.4887 - 2.4030 0.75 2003 106 0.2961 0.3903
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.490
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.010 6236
REMARK 3 ANGLE : 1.307 8414
REMARK 3 CHIRALITY : 0.079 959
REMARK 3 PLANARITY : 0.008 1081
REMARK 3 DIHEDRAL : 17.108 2350
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): 17.9092 7.8451 18.4691
REMARK 3 T TENSOR
REMARK 3 T11: 0.4857 T22: 0.4336
REMARK 3 T33: 0.4983 T12: 0.0092
REMARK 3 T13: -0.1254 T23: -0.0602
REMARK 3 L TENSOR
REMARK 3 L11: 0.3771 L22: 0.3731
REMARK 3 L33: 0.7997 L12: 0.0052
REMARK 3 L13: -0.1333 L23: -0.4012
REMARK 3 S TENSOR
REMARK 3 S11: -0.0174 S12: 0.0741 S13: 0.0058
REMARK 3 S21: -0.1049 S22: 0.0657 S23: 0.1290
REMARK 3 S31: 0.0579 S32: -0.1500 S33: -0.0587
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4I1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-13.
REMARK 100 THE DEPOSITION ID IS D_1000076192.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-MAR-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27391
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400
REMARK 200 RESOLUTION RANGE LOW (A) : 44.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55
REMARK 200 COMPLETENESS FOR SHELL (%) : 69.2
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 39.77
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM MES, 75 MM CALCIUM ACETATE, 10 %
REMARK 280 BENZAMIDINE HYPOCHLORIDE, PH 5.5, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.12150
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.74100
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.12150
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.74100
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 17560 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 17780 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 6830 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 32500 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.33938
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 26.74100
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 76.46711
REMARK 400
REMARK 400 COMPOUND
REMARK 400 4AR IS AMINO({(4S)-4-AMINO-6-[(2,6-DIMETHYLBENZOYL)OXY]-5-OXOHEXYL}
REMARK 400 AMINO)METHANIMINIUM. IN THIS STRUCTURE, 2,6-DIMETHYLBENZOIC ACID
REMARK 400 GROUP LEFT 4AR AND PEPTIDE IS BOUND COVALENTLY TO PROTEIN VIA C7
REMARK 400 ATOM OF 4AR TO SG ATOM OF THE CYS 464 OF THE PROTEIN.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 717
REMARK 465 HIS A 718
REMARK 465 ARG A 719
REMARK 465 HIS A 720
REMARK 465 HIS A 721
REMARK 465 HIS A 722
REMARK 465 HIS A 723
REMARK 465 HIS A 724
REMARK 465 HIS A 725
REMARK 465 HIS C 718
REMARK 465 ARG C 719
REMARK 465 HIS C 720
REMARK 465 HIS C 721
REMARK 465 HIS C 722
REMARK 465 HIS C 723
REMARK 465 HIS C 724
REMARK 465 HIS C 725
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ALA B 0 N CA CB
REMARK 470 ALA D 0 N CA CB
REMARK 475
REMARK 475 ZERO OCCUPANCY RESIDUES
REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY.
REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT
REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE)
REMARK 475 M RES C SSEQI
REMARK 475 ALA C 571
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 LYS A 341 CD CE NZ
REMARK 480 ARG A 354 CG CD NE CZ NH1 NH2
REMARK 480 LYS A 360 CG CD CE NZ
REMARK 480 ARG A 435 CZ NH1 NH2
REMARK 480 LYS A 447 CG CD CE NZ
REMARK 480 ASP A 478 CB CG OD1 OD2
REMARK 480 LYS A 481 CD CE NZ
REMARK 480 GLU A 568 CG CD OE1 OE2
REMARK 480 TYR A 569 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 480 GLU A 572 CG CD OE1 OE2
REMARK 480 GLN A 579 CG CD OE1 NE2
REMARK 480 LYS A 582 CB CG CD CE NZ
REMARK 480 HIS A 584 CB CG ND1 CD2 CE1 NE2
REMARK 480 GLU A 585 CB CG CD OE1 OE2
REMARK 480 GLU A 588 CG CD OE1 OE2
REMARK 480 LYS A 593 CB CG CD CE NZ
REMARK 480 TYR A 620 CB CG CD1 CD2 CE1 CE2 CZ
REMARK 480 TYR A 620 OH
REMARK 480 ILE A 626 CB CG1 CG2 CD1
REMARK 480 MET A 627 CB CG SD CE
REMARK 480 ASP A 629 CG OD1 OD2
REMARK 480 LYS A 644 CB CG CD CE NZ
REMARK 480 LYS A 661 CG CD CE NZ
REMARK 480 LYS A 665 CG CD CE NZ
REMARK 480 LYS A 679 CG CD CE NZ
REMARK 480 GLU A 680 CG CD OE1 OE2
REMARK 480 GLN A 691 OE1 NE2
REMARK 480 GLU A 700 CB CG CD OE1 OE2
REMARK 480 LYS A 702 CD CE NZ
REMARK 480 LYS A 709 CD CE NZ
REMARK 480 LYS C 341 CD CE NZ
REMARK 480 ARG C 354 NE CZ NH1 NH2
REMARK 480 LYS C 360 CG CD CE NZ
REMARK 480 TYR C 389 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 480 LYS C 404 CD CE NZ
REMARK 480 TYR C 470 CD2 CE1 CE2 CZ OH
REMARK 480 LYS C 543 CE NZ
REMARK 480 GLN C 565 CB CG CD OE1 NE2
REMARK 480 THR C 567 CB OG1 CG2
REMARK 480 GLU C 568 CB CG CD OE1 OE2
REMARK 480 TYR C 569 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 480 GLU C 572 CB CG CD OE1 OE2
REMARK 480 GLU C 585 CG CD OE1 OE2
REMARK 480 GLU C 588 CD OE1 OE2
REMARK 480 LYS C 593 NZ
REMARK 480 ASP C 640 CG OD1 OD2
REMARK 480 LYS C 644 CB CG CD CE NZ
REMARK 480 LYS C 661 CG CD CE NZ
REMARK 480 LYS C 665 CB CG CD CE NZ
REMARK 480 HIS C 666 CB CG ND1 CD2 CE1 NE2
REMARK 480 LYS C 679 CG CD CE NZ
REMARK 480 LEU C 695 CG CD1 CD2
REMARK 480 GLU C 696 CB CG CD OE1 OE2
REMARK 480 ASP C 697 CB CG OD1 OD2
REMARK 480 GLU C 700 CG CD OE1 OE2
REMARK 480 ASP C 716 CB CG OD1 OD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 CB CYS A 464 C7 4AR B 4 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 711 -129.49 54.50
REMARK 500 LEU C 711 -130.46 60.91
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 801
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 802
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 803
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 804
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 805
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 801
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 802
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 803
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 804
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 805
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4I1R RELATED DB: PDB
DBREF 4I1P A 339 719 UNP Q9UDY8 MALT1_HUMAN 339 719
DBREF 4I1P C 339 719 UNP Q9UDY8 MALT1_HUMAN 339 719
DBREF 4I1P B 0 4 PDB 4I1P 4I1P 0 4
DBREF 4I1P D 0 4 PDB 4I1P 4I1P 0 4
SEQADV 4I1P MET A 338 UNP Q9UDY8 INITIATING METHIONINE
SEQADV 4I1P HIS A 720 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS A 721 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS A 722 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS A 723 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS A 724 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS A 725 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P MET C 338 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS C 720 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS C 721 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS C 722 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS C 723 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS C 724 UNP Q9UDY8 EXPRESSION TAG
SEQADV 4I1P HIS C 725 UNP Q9UDY8 EXPRESSION TAG
SEQRES 1 A 388 MET LEU ALA LYS ASP LYS VAL ALA LEU LEU ILE GLY ASN
SEQRES 2 A 388 MET ASN TYR ARG GLU HIS PRO LYS LEU LYS ALA PRO LEU
SEQRES 3 A 388 VAL ASP VAL TYR GLU LEU THR ASN LEU LEU ARG GLN LEU
SEQRES 4 A 388 ASP PHE LYS VAL VAL SER LEU LEU ASP LEU THR GLU TYR
SEQRES 5 A 388 GLU MET ARG ASN ALA VAL ASP GLU PHE LEU LEU LEU LEU
SEQRES 6 A 388 ASP LYS GLY VAL TYR GLY LEU LEU TYR TYR ALA GLY HIS
SEQRES 7 A 388 GLY TYR GLU ASN PHE GLY ASN SER PHE MET VAL PRO VAL
SEQRES 8 A 388 ASP ALA PRO ASN PRO TYR ARG SER GLU ASN CYS LEU CYS
SEQRES 9 A 388 VAL GLN ASN ILE LEU LYS LEU MET GLN GLU LYS GLU THR
SEQRES 10 A 388 GLY LEU ASN VAL PHE LEU LEU ASP MET CYS ARG LYS ARG
SEQRES 11 A 388 ASN ASP TYR ASP ASP THR ILE PRO ILE LEU ASP ALA LEU
SEQRES 12 A 388 LYS VAL THR ALA ASN ILE VAL PHE GLY TYR ALA THR CYS
SEQRES 13 A 388 GLN GLY ALA GLU ALA PHE GLU ILE GLN HIS SER GLY LEU
SEQRES 14 A 388 ALA ASN GLY ILE PHE MET LYS PHE LEU LYS ASP ARG LEU
SEQRES 15 A 388 LEU GLU ASP LYS LYS ILE THR VAL LEU LEU ASP GLU VAL
SEQRES 16 A 388 ALA GLU ASP MET GLY LYS CYS HIS LEU THR LYS GLY LYS
SEQRES 17 A 388 GLN ALA LEU GLU ILE ARG SER SER LEU SER GLU LYS ARG
SEQRES 18 A 388 ALA LEU THR ASP PRO ILE GLN GLY THR GLU TYR SER ALA
SEQRES 19 A 388 GLU SER LEU VAL ARG ASN LEU GLN TRP ALA LYS ALA HIS
SEQRES 20 A 388 GLU LEU PRO GLU SER MET CYS LEU LYS PHE ASP CYS GLY
SEQRES 21 A 388 VAL GLN ILE GLN LEU GLY PHE ALA ALA GLU PHE SER ASN
SEQRES 22 A 388 VAL MET ILE ILE TYR THR SER ILE VAL TYR LYS PRO PRO
SEQRES 23 A 388 GLU ILE ILE MET CYS ASP ALA TYR VAL THR ASP PHE PRO
SEQRES 24 A 388 LEU ASP LEU ASP ILE ASP PRO LYS ASP ALA ASN LYS GLY
SEQRES 25 A 388 THR PRO GLU GLU THR GLY SER TYR LEU VAL SER LYS ASP
SEQRES 26 A 388 LEU PRO LYS HIS CYS LEU TYR THR ARG LEU SER SER LEU
SEQRES 27 A 388 GLN LYS LEU LYS GLU HIS LEU VAL PHE THR VAL CYS LEU
SEQRES 28 A 388 SER TYR GLN TYR SER GLY LEU GLU ASP THR VAL GLU ASP
SEQRES 29 A 388 LYS GLN GLU VAL ASN VAL GLY LYS PRO LEU ILE ALA LYS
SEQRES 30 A 388 LEU ASP MET HIS ARG HIS HIS HIS HIS HIS HIS
SEQRES 1 B 5 ALA LEU ARG SER 4AR
SEQRES 1 C 388 MET LEU ALA LYS ASP LYS VAL ALA LEU LEU ILE GLY ASN
SEQRES 2 C 388 MET ASN TYR ARG GLU HIS PRO LYS LEU LYS ALA PRO LEU
SEQRES 3 C 388 VAL ASP VAL TYR GLU LEU THR ASN LEU LEU ARG GLN LEU
SEQRES 4 C 388 ASP PHE LYS VAL VAL SER LEU LEU ASP LEU THR GLU TYR
SEQRES 5 C 388 GLU MET ARG ASN ALA VAL ASP GLU PHE LEU LEU LEU LEU
SEQRES 6 C 388 ASP LYS GLY VAL TYR GLY LEU LEU TYR TYR ALA GLY HIS
SEQRES 7 C 388 GLY TYR GLU ASN PHE GLY ASN SER PHE MET VAL PRO VAL
SEQRES 8 C 388 ASP ALA PRO ASN PRO TYR ARG SER GLU ASN CYS LEU CYS
SEQRES 9 C 388 VAL GLN ASN ILE LEU LYS LEU MET GLN GLU LYS GLU THR
SEQRES 10 C 388 GLY LEU ASN VAL PHE LEU LEU ASP MET CYS ARG LYS ARG
SEQRES 11 C 388 ASN ASP TYR ASP ASP THR ILE PRO ILE LEU ASP ALA LEU
SEQRES 12 C 388 LYS VAL THR ALA ASN ILE VAL PHE GLY TYR ALA THR CYS
SEQRES 13 C 388 GLN GLY ALA GLU ALA PHE GLU ILE GLN HIS SER GLY LEU
SEQRES 14 C 388 ALA ASN GLY ILE PHE MET LYS PHE LEU LYS ASP ARG LEU
SEQRES 15 C 388 LEU GLU ASP LYS LYS ILE THR VAL LEU LEU ASP GLU VAL
SEQRES 16 C 388 ALA GLU ASP MET GLY LYS CYS HIS LEU THR LYS GLY LYS
SEQRES 17 C 388 GLN ALA LEU GLU ILE ARG SER SER LEU SER GLU LYS ARG
SEQRES 18 C 388 ALA LEU THR ASP PRO ILE GLN GLY THR GLU TYR SER ALA
SEQRES 19 C 388 GLU SER LEU VAL ARG ASN LEU GLN TRP ALA LYS ALA HIS
SEQRES 20 C 388 GLU LEU PRO GLU SER MET CYS LEU LYS PHE ASP CYS GLY
SEQRES 21 C 388 VAL GLN ILE GLN LEU GLY PHE ALA ALA GLU PHE SER ASN
SEQRES 22 C 388 VAL MET ILE ILE TYR THR SER ILE VAL TYR LYS PRO PRO
SEQRES 23 C 388 GLU ILE ILE MET CYS ASP ALA TYR VAL THR ASP PHE PRO
SEQRES 24 C 388 LEU ASP LEU ASP ILE ASP PRO LYS ASP ALA ASN LYS GLY
SEQRES 25 C 388 THR PRO GLU GLU THR GLY SER TYR LEU VAL SER LYS ASP
SEQRES 26 C 388 LEU PRO LYS HIS CYS LEU TYR THR ARG LEU SER SER LEU
SEQRES 27 C 388 GLN LYS LEU LYS GLU HIS LEU VAL PHE THR VAL CYS LEU
SEQRES 28 C 388 SER TYR GLN TYR SER GLY LEU GLU ASP THR VAL GLU ASP
SEQRES 29 C 388 LYS GLN GLU VAL ASN VAL GLY LYS PRO LEU ILE ALA LYS
SEQRES 30 C 388 LEU ASP MET HIS ARG HIS HIS HIS HIS HIS HIS
SEQRES 1 D 5 ALA LEU ARG SER 4AR
MODRES 4I1P 4AR B 4 ARG
MODRES 4I1P 4AR D 4 ARG
HET 4AR B 4 12
HET 4AR D 4 12
HET ACT A 801 4
HET ACT A 802 4
HET ACT A 803 4
HET ACT A 804 4
HET ACT A 805 4
HET ACT C 801 4
HET ACT C 802 4
HET ACT C 803 4
HET ACT C 804 4
HET ACT C 805 4
HETNAM 4AR AMINO({(4S)-4-AMINO-6-[(2,6-DIMETHYLBENZOYL)OXY]-5-
HETNAM 2 4AR OXOHEXYL}AMINO)METHANIMINIUM
HETNAM ACT ACETATE ION
FORMUL 2 4AR 2(C16 H25 N4 O3 1+)
FORMUL 5 ACT 10(C2 H3 O2 1-)
FORMUL 15 HOH *116(H2 O)
HELIX 1 1 ALA A 361 LEU A 376 1 16
HELIX 2 2 THR A 387 LEU A 402 1 16
HELIX 3 3 ARG A 435 CYS A 439 5 5
HELIX 4 4 VAL A 442 LYS A 452 1 11
HELIX 5 5 GLY A 509 LYS A 516 1 8
HELIX 6 6 LYS A 524 LYS A 538 1 15
HELIX 7 7 SER A 570 GLU A 585 1 16
HELIX 8 8 PRO A 636 ASP A 640 5 5
HELIX 9 9 ASP A 642 ALA A 646 5 5
HELIX 10 10 THR A 650 GLY A 655 5 6
HELIX 11 11 SER A 674 LEU A 678 5 5
HELIX 12 12 PRO A 710 ASP A 716 5 7
HELIX 13 13 ALA C 361 LEU C 376 1 16
HELIX 14 14 THR C 387 LEU C 401 1 15
HELIX 15 15 ARG C 435 CYS C 439 5 5
HELIX 16 16 VAL C 442 LYS C 452 1 11
HELIX 17 17 GLY C 509 LYS C 516 1 8
HELIX 18 18 LYS C 524 LYS C 538 1 15
HELIX 19 19 CYS C 539 LYS C 543 5 5
HELIX 20 20 SER C 570 GLU C 585 1 16
HELIX 21 21 PRO C 636 ASP C 640 5 5
HELIX 22 22 PRO C 651 GLY C 655 5 5
HELIX 23 23 SER C 674 LEU C 678 5 5
HELIX 24 24 PRO C 710 LEU C 715 5 6
SHEET 1 A 6 LYS A 379 LEU A 384 0
SHEET 2 A 6 LYS A 343 GLY A 349 1 N LYS A 343 O LYS A 379
SHEET 3 A 6 TYR A 407 ALA A 413 1 O TYR A 407 N VAL A 344
SHEET 4 A 6 LEU A 456 ASP A 462 1 O LEU A 460 N LEU A 410
SHEET 5 A 6 ILE A 486 TYR A 490 1 O GLY A 489 N PHE A 459
SHEET 6 A 6 GLU A 549 SER A 552 -1 O GLU A 549 N TYR A 490
SHEET 1 B 3 GLY A 416 ASN A 419 0
SHEET 2 B 3 ASN A 422 MET A 425 -1 O PHE A 424 N TYR A 417
SHEET 3 B 3 LEU A 440 CYS A 441 -1 O LEU A 440 N MET A 425
SHEET 1 C 2 PHE A 499 GLU A 500 0
SHEET 2 C 2 ARG B 2 SER B 3 -1 O ARG B 2 N GLU A 500
SHEET 1 D 4 MET A 590 LYS A 593 0
SHEET 2 D 4 GLN A 599 PHE A 608 -1 O ILE A 600 N LEU A 592
SHEET 3 D 4 VAL A 611 TYR A 620 -1 O ILE A 613 N ALA A 605
SHEET 4 D 4 LEU A 668 LEU A 672 -1 O LEU A 672 N MET A 612
SHEET 1 E 3 ILE A 625 THR A 633 0
SHEET 2 E 3 LEU A 682 TYR A 692 -1 O CYS A 687 N TYR A 631
SHEET 3 E 3 VAL A 699 GLY A 708 -1 O VAL A 699 N TYR A 690
SHEET 1 F 6 LYS C 379 LEU C 384 0
SHEET 2 F 6 LYS C 343 GLY C 349 1 N LYS C 343 O LYS C 379
SHEET 3 F 6 TYR C 407 ALA C 413 1 O TYR C 407 N VAL C 344
SHEET 4 F 6 LEU C 456 ASP C 462 1 O VAL C 458 N LEU C 410
SHEET 5 F 6 ILE C 486 TYR C 490 1 O GLY C 489 N PHE C 459
SHEET 6 F 6 GLU C 549 SER C 552 -1 O GLU C 549 N TYR C 490
SHEET 1 G 3 GLY C 416 ASN C 419 0
SHEET 2 G 3 ASN C 422 MET C 425 -1 O PHE C 424 N TYR C 417
SHEET 3 G 3 LEU C 440 CYS C 441 -1 O LEU C 440 N MET C 425
SHEET 1 H 2 PHE C 499 GLU C 500 0
SHEET 2 H 2 ARG D 2 SER D 3 -1 O ARG D 2 N GLU C 500
SHEET 1 I 4 MET C 590 LYS C 593 0
SHEET 2 I 4 GLN C 599 PHE C 608 -1 O ILE C 600 N LEU C 592
SHEET 3 I 4 VAL C 611 TYR C 620 -1 O ILE C 613 N ALA C 605
SHEET 4 I 4 LEU C 668 LEU C 672 -1 O LEU C 672 N MET C 612
SHEET 1 J 3 ILE C 625 THR C 633 0
SHEET 2 J 3 VAL C 683 TYR C 692 -1 O CYS C 687 N TYR C 631
SHEET 3 J 3 VAL C 699 ASN C 706 -1 O VAL C 699 N TYR C 690
LINK SG CYS A 464 C7 4AR B 4 1555 1555 1.09
LINK C SER B 3 N 4AR B 4 1555 1555 1.38
LINK SG CYS C 464 C7 4AR D 4 1555 1555 1.28
LINK C SER D 3 N 4AR D 4 1555 1555 1.33
CISPEP 1 ASN A 432 PRO A 433 0 7.38
CISPEP 2 ASN C 432 PRO C 433 0 6.36
CISPEP 3 GLY C 505 LEU C 506 0 -5.09
SITE 1 AC1 5 TYR A 490 GLN A 494 GLU A 549 ARG A 551
SITE 2 AC1 5 ARG C 551
SITE 1 AC2 2 GLU A 497 PHE A 499
SITE 1 AC3 2 ARG A 392 ACT A 804
SITE 1 AC4 6 ARG A 392 CYS A 439 LEU A 440 CYS A 441
SITE 2 AC4 6 ASN A 444 ACT A 803
SITE 1 AC5 3 HOH A 907 ASP C 530 GLU C 534
SITE 1 AC6 2 ARG C 392 VAL C 395
SITE 1 AC7 2 TYR C 434 ASP C 478
SITE 1 AC8 3 GLU C 390 ALA C 394 GLN C 676
SITE 1 AC9 3 MET C 338 ASP C 522 HOH C 953
SITE 1 BC1 3 GLU C 397 GLN C 579 LEU C 715
CRYST1 178.243 53.482 78.740 90.00 103.80 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005610 0.000000 0.001378 0.00000
SCALE2 0.000000 0.018698 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013078 0.00000