HEADER SUGAR BINDING PROTEIN 28-NOV-12 4I4X
TITLE BEL BETA-TREFOIL COMPLEX WITH T-ANTIGEN DISACCHARIDE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BEL BETA-TREFOIL;
COMPND 3 CHAIN: A, B, C, D
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BOLETUS EDULIS;
SOURCE 3 ORGANISM_COMMON: KING BOLETE MUSHROOM;
SOURCE 4 ORGANISM_TAXID: 36056
KEYWDS LECTIN, FRUITING BODIES, SUGAR BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR M.BOVI,L.CENCI,M.PERDUCA,S.CAPALDI,M.E.CARRIZO,L.CIVIERO,
AUTHOR 2 L.R.CHIARELLI,M.GALLIANO,H.L.MONACO
REVDAT 3 20-SEP-23 4I4X 1 HETSYN
REVDAT 2 29-JUL-20 4I4X 1 COMPND REMARK HETNAM LINK
REVDAT 2 2 1 SITE ATOM
REVDAT 1 24-APR-13 4I4X 0
JRNL AUTH M.BOVI,L.CENCI,M.PERDUCA,S.CAPALDI,M.E.CARRIZO,L.CIVIERO,
JRNL AUTH 2 L.R.CHIARELLI,M.GALLIANO,H.L.MONACO
JRNL TITL BEL {BETA}-TREFOIL: A NOVEL LECTIN WITH ANTINEOPLASTIC
JRNL TITL 2 PROPERTIES IN KING BOLETE (BOLETUS EDULIS) MUSHROOMS.
JRNL REF GLYCOBIOLOGY V. 23 578 2013
JRNL REFN ISSN 0959-6658
JRNL PMID 23213111
JRNL DOI 10.1093/GLYCOB/CWS164
REMARK 2
REMARK 2 RESOLUTION. 1.72 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.6.0117
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.66
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9
REMARK 3 NUMBER OF REFLECTIONS : 61668
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.178
REMARK 3 R VALUE (WORKING SET) : 0.176
REMARK 3 FREE R VALUE : 0.205
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 3290
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76
REMARK 3 REFLECTION IN BIN (WORKING SET) : 4343
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.02
REMARK 3 BIN R VALUE (WORKING SET) : 0.2070
REMARK 3 BIN FREE R VALUE SET COUNT : 214
REMARK 3 BIN FREE R VALUE : 0.2580
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4756
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 182
REMARK 3 SOLVENT ATOMS : 714
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 12.30
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.79
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.01000
REMARK 3 B22 (A**2) : -0.03000
REMARK 3 B33 (A**2) : 0.01000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.01000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.119
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.464
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5156 ; 0.006 ; 0.020
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7060 ; 1.036 ; 1.976
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 5.821 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;32.297 ;23.577
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 705 ; 9.789 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.034 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 758 ; 0.073 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4098 ; 0.005 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1 A 146
REMARK 3 ORIGIN FOR THE GROUP (A): 17.6660 -1.3568 15.2169
REMARK 3 T TENSOR
REMARK 3 T11: 0.0112 T22: 0.0025
REMARK 3 T33: 0.0118 T12: 0.0035
REMARK 3 T13: -0.0020 T23: -0.0024
REMARK 3 L TENSOR
REMARK 3 L11: 0.8074 L22: 0.5957
REMARK 3 L33: 0.7270 L12: 0.0014
REMARK 3 L13: -0.0615 L23: -0.0095
REMARK 3 S TENSOR
REMARK 3 S11: 0.0034 S12: -0.0252 S13: -0.0031
REMARK 3 S21: -0.0237 S22: -0.0092 S23: -0.0368
REMARK 3 S31: 0.0200 S32: 0.0127 S33: 0.0058
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 1 B 146
REMARK 3 ORIGIN FOR THE GROUP (A): -12.0775 1.8751 18.0503
REMARK 3 T TENSOR
REMARK 3 T11: 0.0120 T22: 0.0057
REMARK 3 T33: 0.0140 T12: 0.0025
REMARK 3 T13: -0.0004 T23: -0.0044
REMARK 3 L TENSOR
REMARK 3 L11: 0.8392 L22: 0.5154
REMARK 3 L33: 0.6486 L12: -0.0526
REMARK 3 L13: 0.0848 L23: -0.0160
REMARK 3 S TENSOR
REMARK 3 S11: 0.0051 S12: -0.0258 S13: -0.0015
REMARK 3 S21: -0.0123 S22: -0.0222 S23: 0.0333
REMARK 3 S31: 0.0113 S32: -0.0453 S33: 0.0171
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : C 1 C 146
REMARK 3 ORIGIN FOR THE GROUP (A): -5.9258 35.7709 18.5983
REMARK 3 T TENSOR
REMARK 3 T11: 0.0160 T22: 0.0066
REMARK 3 T33: 0.0096 T12: 0.0048
REMARK 3 T13: -0.0032 T23: 0.0047
REMARK 3 L TENSOR
REMARK 3 L11: 0.8115 L22: 0.7013
REMARK 3 L33: 0.6871 L12: -0.0579
REMARK 3 L13: -0.2549 L23: 0.0757
REMARK 3 S TENSOR
REMARK 3 S11: -0.0003 S12: 0.0179 S13: 0.0320
REMARK 3 S21: -0.0066 S22: 0.0147 S23: 0.0334
REMARK 3 S31: 0.0181 S32: -0.0313 S33: -0.0144
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : D 1 D 146
REMARK 3 ORIGIN FOR THE GROUP (A): 23.8987 32.1817 20.1951
REMARK 3 T TENSOR
REMARK 3 T11: 0.0082 T22: 0.0111
REMARK 3 T33: 0.0065 T12: 0.0066
REMARK 3 T13: 0.0000 T23: 0.0014
REMARK 3 L TENSOR
REMARK 3 L11: 1.2559 L22: 0.5257
REMARK 3 L33: 0.8249 L12: -0.1747
REMARK 3 L13: -0.1117 L23: 0.0889
REMARK 3 S TENSOR
REMARK 3 S11: 0.0342 S12: 0.0049 S13: 0.0317
REMARK 3 S21: -0.0041 S22: -0.0274 S23: -0.0105
REMARK 3 S31: 0.0135 S32: 0.0601 S33: -0.0068
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
REMARK 3 U VALUES : RESIDUAL ONLY
REMARK 4
REMARK 4 4I4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-12.
REMARK 100 THE DEPOSITION ID IS D_1000076308.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-JUN-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID14-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340
REMARK 200 MONOCHROMATOR : DIAMOND(001)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64980
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1
REMARK 200 DATA REDUNDANCY : 3.700
REMARK 200 R MERGE (I) : 0.09300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81
REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7
REMARK 200 DATA REDUNDANCY IN SHELL : 3.60
REMARK 200 R MERGE FOR SHELL (I) : 0.34600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.300
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 4I4P
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.58
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.2 M MAGNESIUM
REMARK 280 CHLORIDE, 25% PEG4000, 0.2 M 1-BUTYL-3-METHYLIMIDAZOLIUM
REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.98000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G, H
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, I, J, K
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 4
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 5
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 6
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J, K
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O3 A2G E 1 O5 GAL E 2 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 30 92.54 74.64
REMARK 500 THR A 123 -103.77 -93.73
REMARK 500 ASN B 5 61.03 -119.21
REMARK 500 ASN B 30 91.16 67.99
REMARK 500 THR B 123 -104.62 -96.53
REMARK 500 ASN C 30 93.82 71.80
REMARK 500 THR C 123 -89.16 -109.86
REMARK 500 ASN D 30 90.50 69.80
REMARK 500 THR D 123 -107.13 -90.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4I4O RELATED DB: PDB
REMARK 900 RELATED ID: 4I4P RELATED DB: PDB
REMARK 900 RELATED ID: 4I4Q RELATED DB: PDB
REMARK 900 RELATED ID: 4I4R RELATED DB: PDB
REMARK 900 RELATED ID: 4I4S RELATED DB: PDB
REMARK 900 RELATED ID: 4I4U RELATED DB: PDB
REMARK 900 RELATED ID: 4I4V RELATED DB: PDB
REMARK 900 RELATED ID: 4I4Y RELATED DB: PDB
DBREF 4I4X A 1 146 PDB 4I4X 4I4X 1 146
DBREF 4I4X B 1 146 PDB 4I4X 4I4X 1 146
DBREF 4I4X C 1 146 PDB 4I4X 4I4X 1 146
DBREF 4I4X D 1 146 PDB 4I4X 4I4X 1 146
SEQRES 1 A 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE
SEQRES 2 A 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER
SEQRES 3 A 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY
SEQRES 4 A 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY
SEQRES 5 A 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL
SEQRES 6 A 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER
SEQRES 7 A 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN
SEQRES 8 A 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO
SEQRES 9 A 146 ASN SER PHE ARG ILE TYR ASP LEU ALA SER ASP THR VAL
SEQRES 10 A 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN
SEQRES 11 A 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE
SEQRES 12 A 146 GLU LEU VAL
SEQRES 1 B 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE
SEQRES 2 B 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER
SEQRES 3 B 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY
SEQRES 4 B 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY
SEQRES 5 B 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL
SEQRES 6 B 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER
SEQRES 7 B 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN
SEQRES 8 B 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO
SEQRES 9 B 146 ASN SER PHE ARG ILE TYR ASP LEU ALA SER ASP THR VAL
SEQRES 10 B 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN
SEQRES 11 B 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE
SEQRES 12 B 146 GLU LEU VAL
SEQRES 1 C 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE
SEQRES 2 C 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER
SEQRES 3 C 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY
SEQRES 4 C 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY
SEQRES 5 C 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL
SEQRES 6 C 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER
SEQRES 7 C 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN
SEQRES 8 C 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO
SEQRES 9 C 146 ASN SER PHE ARG ILE TYR ASP LEU ALA SER ASP THR VAL
SEQRES 10 C 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN
SEQRES 11 C 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE
SEQRES 12 C 146 GLU LEU VAL
SEQRES 1 D 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE
SEQRES 2 D 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER
SEQRES 3 D 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY
SEQRES 4 D 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY
SEQRES 5 D 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL
SEQRES 6 D 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER
SEQRES 7 D 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN
SEQRES 8 D 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO
SEQRES 9 D 146 ASN SER PHE ARG ILE TYR ASP LEU ALA SER ASP THR VAL
SEQRES 10 D 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN
SEQRES 11 D 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE
SEQRES 12 D 146 GLU LEU VAL
HET A2G E 1 15
HET GAL E 2 11
HET A2G F 1 15
HET GAL F 2 11
HET A2G G 1 15
HET GAL G 2 11
HET A2G H 1 15
HET GAL H 2 11
HET A2G I 1 15
HET GAL I 2 11
HET A2G J 1 15
HET GAL J 2 11
HET A2G K 1 15
HET GAL K 2 11
HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE
HETNAM GAL BETA-D-GALACTOPYRANOSE
HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY-
HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2-
HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO-
HETSYN 4 A2G GALACTOSE
HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE
FORMUL 5 A2G 7(C8 H15 N O6)
FORMUL 5 GAL 7(C6 H12 O6)
FORMUL 12 HOH *714(H2 O)
HELIX 1 1 TYR A 42 GLN A 45 5 4
HELIX 2 2 THR A 53 LYS A 57 5 5
HELIX 3 3 TYR A 90 ASN A 93 5 4
HELIX 4 4 TYR A 136 GLN A 139 5 4
HELIX 5 5 TYR B 42 GLN B 45 5 4
HELIX 6 6 THR B 53 LYS B 57 5 5
HELIX 7 7 TYR B 90 ASN B 93 5 4
HELIX 8 8 TYR B 136 GLN B 139 5 4
HELIX 9 9 TYR C 42 GLN C 45 5 4
HELIX 10 10 THR C 53 LYS C 57 5 5
HELIX 11 11 TYR C 90 ASN C 93 5 4
HELIX 12 12 TYR C 136 GLN C 139 5 4
HELIX 13 13 TYR D 42 GLN D 45 5 4
HELIX 14 14 THR D 53 LYS D 57 5 5
HELIX 15 15 TYR D 90 ASN D 93 5 4
HELIX 16 16 TYR D 136 GLN D 139 5 4
SHEET 1 A 2 PHE A 13 ALA A 17 0
SHEET 2 A 2 TRP A 141 LEU A 145 -1 O GLU A 144 N ARG A 14
SHEET 1 B 2 VAL A 23 SER A 26 0
SHEET 2 B 2 VAL A 34 TYR A 37 -1 O TYR A 37 N VAL A 23
SHEET 1 C 2 PHE A 47 TYR A 51 0
SHEET 2 C 2 TYR A 60 SER A 64 -1 O LYS A 63 N THR A 48
SHEET 1 D 2 VAL A 70 SER A 73 0
SHEET 2 D 2 VAL A 81 ILE A 84 -1 O ILE A 84 N VAL A 70
SHEET 1 E 4 PHE A 95 GLN A 99 0
SHEET 2 E 4 PHE A 107 ASP A 111 -1 O TYR A 110 N GLN A 96
SHEET 3 E 4 THR A 116 SER A 120 -1 O THR A 116 N ASP A 111
SHEET 4 E 4 PHE A 128 PHE A 131 -1 O PHE A 131 N VAL A 117
SHEET 1 F 2 PHE B 13 ALA B 17 0
SHEET 2 F 2 TRP B 141 LEU B 145 -1 O GLU B 144 N ARG B 14
SHEET 1 G 2 VAL B 23 SER B 26 0
SHEET 2 G 2 VAL B 34 TYR B 37 -1 O TYR B 37 N VAL B 23
SHEET 1 H 2 PHE B 47 TYR B 51 0
SHEET 2 H 2 TYR B 60 SER B 64 -1 O LYS B 63 N THR B 48
SHEET 1 I 2 VAL B 70 SER B 73 0
SHEET 2 I 2 VAL B 81 ILE B 84 -1 O ILE B 84 N VAL B 70
SHEET 1 J 4 PHE B 95 GLN B 99 0
SHEET 2 J 4 PHE B 107 ASP B 111 -1 O TYR B 110 N GLN B 96
SHEET 3 J 4 THR B 116 SER B 120 -1 O THR B 116 N ASP B 111
SHEET 4 J 4 PHE B 128 PHE B 131 -1 O GLY B 129 N TYR B 119
SHEET 1 K 2 PHE C 13 ALA C 17 0
SHEET 2 K 2 TRP C 141 LEU C 145 -1 O GLU C 144 N ARG C 14
SHEET 1 L 2 VAL C 23 SER C 26 0
SHEET 2 L 2 VAL C 34 TYR C 37 -1 O TYR C 37 N VAL C 23
SHEET 1 M 2 PHE C 47 TYR C 51 0
SHEET 2 M 2 TYR C 60 SER C 64 -1 O LYS C 63 N THR C 48
SHEET 1 N 2 VAL C 70 SER C 73 0
SHEET 2 N 2 VAL C 81 ILE C 84 -1 O ILE C 84 N VAL C 70
SHEET 1 O 4 PHE C 95 GLN C 99 0
SHEET 2 O 4 PHE C 107 ASP C 111 -1 O TYR C 110 N GLN C 96
SHEET 3 O 4 THR C 116 SER C 120 -1 O THR C 116 N ASP C 111
SHEET 4 O 4 PHE C 128 PHE C 131 -1 O GLY C 129 N TYR C 119
SHEET 1 P 2 PHE D 13 ALA D 17 0
SHEET 2 P 2 TRP D 141 LEU D 145 -1 O GLU D 144 N ARG D 14
SHEET 1 Q 2 VAL D 23 SER D 26 0
SHEET 2 Q 2 VAL D 34 TYR D 37 -1 O TYR D 37 N VAL D 23
SHEET 1 R 2 PHE D 47 TYR D 51 0
SHEET 2 R 2 TYR D 60 SER D 64 -1 O LYS D 63 N THR D 48
SHEET 1 S 2 VAL D 70 SER D 73 0
SHEET 2 S 2 VAL D 81 ILE D 84 -1 O ILE D 84 N VAL D 70
SHEET 1 T 4 PHE D 95 GLN D 99 0
SHEET 2 T 4 PHE D 107 ASP D 111 -1 O TYR D 110 N GLN D 96
SHEET 3 T 4 THR D 116 SER D 120 -1 O THR D 116 N ASP D 111
SHEET 4 T 4 PHE D 128 PHE D 131 -1 O GLY D 129 N TYR D 119
LINK O3 A2G E 1 C1 GAL E 2 1555 1555 1.43
LINK O3 A2G F 1 C1 GAL F 2 1555 1555 1.44
LINK O3 A2G G 1 C1 GAL G 2 1555 1555 1.43
LINK O3 A2G H 1 C1 GAL H 2 1555 1555 1.44
LINK O3 A2G I 1 C1 GAL I 2 1555 1555 1.43
LINK O3 A2G J 1 C1 GAL J 2 1555 1555 1.43
LINK O3 A2G K 1 C1 GAL K 2 1555 1555 1.43
CISPEP 1 PRO A 31 PRO A 32 0 1.64
CISPEP 2 SER A 78 PRO A 79 0 -1.57
CISPEP 3 ASP A 125 PRO A 126 0 -2.83
CISPEP 4 PRO B 31 PRO B 32 0 1.64
CISPEP 5 SER B 78 PRO B 79 0 -3.15
CISPEP 6 ASP B 125 PRO B 126 0 -4.11
CISPEP 7 PRO C 31 PRO C 32 0 -1.80
CISPEP 8 PRO C 31 PRO C 32 0 -2.42
CISPEP 9 SER C 78 PRO C 79 0 -1.13
CISPEP 10 ASP C 125 PRO C 126 0 -9.68
CISPEP 11 PRO D 31 PRO D 32 0 0.21
CISPEP 12 SER D 78 PRO D 79 0 -0.79
CISPEP 13 ASP D 125 PRO D 126 0 -5.40
CRYST1 66.410 69.960 71.790 90.00 106.36 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015058 0.000000 0.004420 0.00000
SCALE2 0.000000 0.014294 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014517 0.00000