HEADER SUGAR BINDING PROTEIN 28-NOV-12 4I4X TITLE BEL BETA-TREFOIL COMPLEX WITH T-ANTIGEN DISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BEL BETA-TREFOIL; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOLETUS EDULIS; SOURCE 3 ORGANISM_COMMON: KING BOLETE MUSHROOM; SOURCE 4 ORGANISM_TAXID: 36056 KEYWDS LECTIN, FRUITING BODIES, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BOVI,L.CENCI,M.PERDUCA,S.CAPALDI,M.E.CARRIZO,L.CIVIERO, AUTHOR 2 L.R.CHIARELLI,M.GALLIANO,H.L.MONACO REVDAT 3 20-SEP-23 4I4X 1 HETSYN REVDAT 2 29-JUL-20 4I4X 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 24-APR-13 4I4X 0 JRNL AUTH M.BOVI,L.CENCI,M.PERDUCA,S.CAPALDI,M.E.CARRIZO,L.CIVIERO, JRNL AUTH 2 L.R.CHIARELLI,M.GALLIANO,H.L.MONACO JRNL TITL BEL {BETA}-TREFOIL: A NOVEL LECTIN WITH ANTINEOPLASTIC JRNL TITL 2 PROPERTIES IN KING BOLETE (BOLETUS EDULIS) MUSHROOMS. JRNL REF GLYCOBIOLOGY V. 23 578 2013 JRNL REFN ISSN 0959-6658 JRNL PMID 23213111 JRNL DOI 10.1093/GLYCOB/CWS164 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 61668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4343 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4756 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 182 REMARK 3 SOLVENT ATOMS : 714 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.464 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5156 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7060 ; 1.036 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 5.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;32.297 ;23.577 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 705 ; 9.789 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.034 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 758 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4098 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6660 -1.3568 15.2169 REMARK 3 T TENSOR REMARK 3 T11: 0.0112 T22: 0.0025 REMARK 3 T33: 0.0118 T12: 0.0035 REMARK 3 T13: -0.0020 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.8074 L22: 0.5957 REMARK 3 L33: 0.7270 L12: 0.0014 REMARK 3 L13: -0.0615 L23: -0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.0252 S13: -0.0031 REMARK 3 S21: -0.0237 S22: -0.0092 S23: -0.0368 REMARK 3 S31: 0.0200 S32: 0.0127 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0775 1.8751 18.0503 REMARK 3 T TENSOR REMARK 3 T11: 0.0120 T22: 0.0057 REMARK 3 T33: 0.0140 T12: 0.0025 REMARK 3 T13: -0.0004 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.8392 L22: 0.5154 REMARK 3 L33: 0.6486 L12: -0.0526 REMARK 3 L13: 0.0848 L23: -0.0160 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0258 S13: -0.0015 REMARK 3 S21: -0.0123 S22: -0.0222 S23: 0.0333 REMARK 3 S31: 0.0113 S32: -0.0453 S33: 0.0171 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 146 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9258 35.7709 18.5983 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.0066 REMARK 3 T33: 0.0096 T12: 0.0048 REMARK 3 T13: -0.0032 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.8115 L22: 0.7013 REMARK 3 L33: 0.6871 L12: -0.0579 REMARK 3 L13: -0.2549 L23: 0.0757 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.0179 S13: 0.0320 REMARK 3 S21: -0.0066 S22: 0.0147 S23: 0.0334 REMARK 3 S31: 0.0181 S32: -0.0313 S33: -0.0144 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 146 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8987 32.1817 20.1951 REMARK 3 T TENSOR REMARK 3 T11: 0.0082 T22: 0.0111 REMARK 3 T33: 0.0065 T12: 0.0066 REMARK 3 T13: 0.0000 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.2559 L22: 0.5257 REMARK 3 L33: 0.8249 L12: -0.1747 REMARK 3 L13: -0.1117 L23: 0.0889 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.0049 S13: 0.0317 REMARK 3 S21: -0.0041 S22: -0.0274 S23: -0.0105 REMARK 3 S31: 0.0135 S32: 0.0601 S33: -0.0068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4I4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : DIAMOND(001) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64980 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4I4P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 25% PEG4000, 0.2 M 1-BUTYL-3-METHYLIMIDAZOLIUM REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.98000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, I, J, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 A2G E 1 O5 GAL E 2 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 92.54 74.64 REMARK 500 THR A 123 -103.77 -93.73 REMARK 500 ASN B 5 61.03 -119.21 REMARK 500 ASN B 30 91.16 67.99 REMARK 500 THR B 123 -104.62 -96.53 REMARK 500 ASN C 30 93.82 71.80 REMARK 500 THR C 123 -89.16 -109.86 REMARK 500 ASN D 30 90.50 69.80 REMARK 500 THR D 123 -107.13 -90.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I4O RELATED DB: PDB REMARK 900 RELATED ID: 4I4P RELATED DB: PDB REMARK 900 RELATED ID: 4I4Q RELATED DB: PDB REMARK 900 RELATED ID: 4I4R RELATED DB: PDB REMARK 900 RELATED ID: 4I4S RELATED DB: PDB REMARK 900 RELATED ID: 4I4U RELATED DB: PDB REMARK 900 RELATED ID: 4I4V RELATED DB: PDB REMARK 900 RELATED ID: 4I4Y RELATED DB: PDB DBREF 4I4X A 1 146 PDB 4I4X 4I4X 1 146 DBREF 4I4X B 1 146 PDB 4I4X 4I4X 1 146 DBREF 4I4X C 1 146 PDB 4I4X 4I4X 1 146 DBREF 4I4X D 1 146 PDB 4I4X 4I4X 1 146 SEQRES 1 A 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE SEQRES 2 A 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER SEQRES 3 A 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY SEQRES 4 A 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY SEQRES 5 A 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL SEQRES 6 A 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER SEQRES 7 A 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN SEQRES 8 A 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO SEQRES 9 A 146 ASN SER PHE ARG ILE TYR ASP LEU ALA SER ASP THR VAL SEQRES 10 A 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN SEQRES 11 A 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE SEQRES 12 A 146 GLU LEU VAL SEQRES 1 B 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE SEQRES 2 B 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER SEQRES 3 B 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY SEQRES 4 B 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY SEQRES 5 B 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL SEQRES 6 B 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER SEQRES 7 B 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN SEQRES 8 B 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO SEQRES 9 B 146 ASN SER PHE ARG ILE TYR ASP LEU ALA SER ASP THR VAL SEQRES 10 B 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN SEQRES 11 B 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE SEQRES 12 B 146 GLU LEU VAL SEQRES 1 C 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE SEQRES 2 C 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER SEQRES 3 C 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY SEQRES 4 C 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY SEQRES 5 C 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL SEQRES 6 C 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER SEQRES 7 C 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN SEQRES 8 C 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO SEQRES 9 C 146 ASN SER PHE ARG ILE TYR ASP LEU ALA SER ASP THR VAL SEQRES 10 C 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN SEQRES 11 C 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE SEQRES 12 C 146 GLU LEU VAL SEQRES 1 D 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE SEQRES 2 D 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER SEQRES 3 D 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY SEQRES 4 D 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY SEQRES 5 D 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL SEQRES 6 D 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER SEQRES 7 D 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN SEQRES 8 D 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO SEQRES 9 D 146 ASN SER PHE ARG ILE TYR ASP LEU ALA SER ASP THR VAL SEQRES 10 D 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN SEQRES 11 D 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE SEQRES 12 D 146 GLU LEU VAL HET A2G E 1 15 HET GAL E 2 11 HET A2G F 1 15 HET GAL F 2 11 HET A2G G 1 15 HET GAL G 2 11 HET A2G H 1 15 HET GAL H 2 11 HET A2G I 1 15 HET GAL I 2 11 HET A2G J 1 15 HET GAL J 2 11 HET A2G K 1 15 HET GAL K 2 11 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 5 A2G 7(C8 H15 N O6) FORMUL 5 GAL 7(C6 H12 O6) FORMUL 12 HOH *714(H2 O) HELIX 1 1 TYR A 42 GLN A 45 5 4 HELIX 2 2 THR A 53 LYS A 57 5 5 HELIX 3 3 TYR A 90 ASN A 93 5 4 HELIX 4 4 TYR A 136 GLN A 139 5 4 HELIX 5 5 TYR B 42 GLN B 45 5 4 HELIX 6 6 THR B 53 LYS B 57 5 5 HELIX 7 7 TYR B 90 ASN B 93 5 4 HELIX 8 8 TYR B 136 GLN B 139 5 4 HELIX 9 9 TYR C 42 GLN C 45 5 4 HELIX 10 10 THR C 53 LYS C 57 5 5 HELIX 11 11 TYR C 90 ASN C 93 5 4 HELIX 12 12 TYR C 136 GLN C 139 5 4 HELIX 13 13 TYR D 42 GLN D 45 5 4 HELIX 14 14 THR D 53 LYS D 57 5 5 HELIX 15 15 TYR D 90 ASN D 93 5 4 HELIX 16 16 TYR D 136 GLN D 139 5 4 SHEET 1 A 2 PHE A 13 ALA A 17 0 SHEET 2 A 2 TRP A 141 LEU A 145 -1 O GLU A 144 N ARG A 14 SHEET 1 B 2 VAL A 23 SER A 26 0 SHEET 2 B 2 VAL A 34 TYR A 37 -1 O TYR A 37 N VAL A 23 SHEET 1 C 2 PHE A 47 TYR A 51 0 SHEET 2 C 2 TYR A 60 SER A 64 -1 O LYS A 63 N THR A 48 SHEET 1 D 2 VAL A 70 SER A 73 0 SHEET 2 D 2 VAL A 81 ILE A 84 -1 O ILE A 84 N VAL A 70 SHEET 1 E 4 PHE A 95 GLN A 99 0 SHEET 2 E 4 PHE A 107 ASP A 111 -1 O TYR A 110 N GLN A 96 SHEET 3 E 4 THR A 116 SER A 120 -1 O THR A 116 N ASP A 111 SHEET 4 E 4 PHE A 128 PHE A 131 -1 O PHE A 131 N VAL A 117 SHEET 1 F 2 PHE B 13 ALA B 17 0 SHEET 2 F 2 TRP B 141 LEU B 145 -1 O GLU B 144 N ARG B 14 SHEET 1 G 2 VAL B 23 SER B 26 0 SHEET 2 G 2 VAL B 34 TYR B 37 -1 O TYR B 37 N VAL B 23 SHEET 1 H 2 PHE B 47 TYR B 51 0 SHEET 2 H 2 TYR B 60 SER B 64 -1 O LYS B 63 N THR B 48 SHEET 1 I 2 VAL B 70 SER B 73 0 SHEET 2 I 2 VAL B 81 ILE B 84 -1 O ILE B 84 N VAL B 70 SHEET 1 J 4 PHE B 95 GLN B 99 0 SHEET 2 J 4 PHE B 107 ASP B 111 -1 O TYR B 110 N GLN B 96 SHEET 3 J 4 THR B 116 SER B 120 -1 O THR B 116 N ASP B 111 SHEET 4 J 4 PHE B 128 PHE B 131 -1 O GLY B 129 N TYR B 119 SHEET 1 K 2 PHE C 13 ALA C 17 0 SHEET 2 K 2 TRP C 141 LEU C 145 -1 O GLU C 144 N ARG C 14 SHEET 1 L 2 VAL C 23 SER C 26 0 SHEET 2 L 2 VAL C 34 TYR C 37 -1 O TYR C 37 N VAL C 23 SHEET 1 M 2 PHE C 47 TYR C 51 0 SHEET 2 M 2 TYR C 60 SER C 64 -1 O LYS C 63 N THR C 48 SHEET 1 N 2 VAL C 70 SER C 73 0 SHEET 2 N 2 VAL C 81 ILE C 84 -1 O ILE C 84 N VAL C 70 SHEET 1 O 4 PHE C 95 GLN C 99 0 SHEET 2 O 4 PHE C 107 ASP C 111 -1 O TYR C 110 N GLN C 96 SHEET 3 O 4 THR C 116 SER C 120 -1 O THR C 116 N ASP C 111 SHEET 4 O 4 PHE C 128 PHE C 131 -1 O GLY C 129 N TYR C 119 SHEET 1 P 2 PHE D 13 ALA D 17 0 SHEET 2 P 2 TRP D 141 LEU D 145 -1 O GLU D 144 N ARG D 14 SHEET 1 Q 2 VAL D 23 SER D 26 0 SHEET 2 Q 2 VAL D 34 TYR D 37 -1 O TYR D 37 N VAL D 23 SHEET 1 R 2 PHE D 47 TYR D 51 0 SHEET 2 R 2 TYR D 60 SER D 64 -1 O LYS D 63 N THR D 48 SHEET 1 S 2 VAL D 70 SER D 73 0 SHEET 2 S 2 VAL D 81 ILE D 84 -1 O ILE D 84 N VAL D 70 SHEET 1 T 4 PHE D 95 GLN D 99 0 SHEET 2 T 4 PHE D 107 ASP D 111 -1 O TYR D 110 N GLN D 96 SHEET 3 T 4 THR D 116 SER D 120 -1 O THR D 116 N ASP D 111 SHEET 4 T 4 PHE D 128 PHE D 131 -1 O GLY D 129 N TYR D 119 LINK O3 A2G E 1 C1 GAL E 2 1555 1555 1.43 LINK O3 A2G F 1 C1 GAL F 2 1555 1555 1.44 LINK O3 A2G G 1 C1 GAL G 2 1555 1555 1.43 LINK O3 A2G H 1 C1 GAL H 2 1555 1555 1.44 LINK O3 A2G I 1 C1 GAL I 2 1555 1555 1.43 LINK O3 A2G J 1 C1 GAL J 2 1555 1555 1.43 LINK O3 A2G K 1 C1 GAL K 2 1555 1555 1.43 CISPEP 1 PRO A 31 PRO A 32 0 1.64 CISPEP 2 SER A 78 PRO A 79 0 -1.57 CISPEP 3 ASP A 125 PRO A 126 0 -2.83 CISPEP 4 PRO B 31 PRO B 32 0 1.64 CISPEP 5 SER B 78 PRO B 79 0 -3.15 CISPEP 6 ASP B 125 PRO B 126 0 -4.11 CISPEP 7 PRO C 31 PRO C 32 0 -1.80 CISPEP 8 PRO C 31 PRO C 32 0 -2.42 CISPEP 9 SER C 78 PRO C 79 0 -1.13 CISPEP 10 ASP C 125 PRO C 126 0 -9.68 CISPEP 11 PRO D 31 PRO D 32 0 0.21 CISPEP 12 SER D 78 PRO D 79 0 -0.79 CISPEP 13 ASP D 125 PRO D 126 0 -5.40 CRYST1 66.410 69.960 71.790 90.00 106.36 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015058 0.000000 0.004420 0.00000 SCALE2 0.000000 0.014294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014517 0.00000