HEADER SUGAR BINDING PROTEIN 28-NOV-12 4I4Y TITLE BEL BETA-TREFOIL COMPLEX WITH T-ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BEL BETA-TREFOIL; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOLETUS EDULIS; SOURCE 3 ORGANISM_COMMON: KING BOLETE MUSHROOM; SOURCE 4 ORGANISM_TAXID: 36056 KEYWDS LECTIN, FRUITING BODIES, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BOVI,L.CENCI,M.PERDUCA,S.CAPALDI,M.E.CARRIZO,L.CIVIERO, AUTHOR 2 L.R.CHIARELLI,M.GALLIANO,H.L.MONACO REVDAT 3 20-SEP-23 4I4Y 1 HETSYN REVDAT 2 29-JUL-20 4I4Y 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 24-APR-13 4I4Y 0 JRNL AUTH M.BOVI,L.CENCI,M.PERDUCA,S.CAPALDI,M.E.CARRIZO,L.CIVIERO, JRNL AUTH 2 L.R.CHIARELLI,M.GALLIANO,H.L.MONACO JRNL TITL BEL {BETA}-TREFOIL: A NOVEL LECTIN WITH ANTINEOPLASTIC JRNL TITL 2 PROPERTIES IN KING BOLETE (BOLETUS EDULIS) MUSHROOMS. JRNL REF GLYCOBIOLOGY V. 23 578 2013 JRNL REFN ISSN 0959-6658 JRNL PMID 23213111 JRNL DOI 10.1093/GLYCOB/CWS164 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 45649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2421 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3209 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4756 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 200 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.336 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5140 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7027 ; 1.148 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 592 ; 6.369 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;32.056 ;23.673 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;10.598 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;18.695 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 745 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4097 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6629 -1.3572 15.2378 REMARK 3 T TENSOR REMARK 3 T11: 0.0481 T22: 0.0041 REMARK 3 T33: 0.0453 T12: -0.0038 REMARK 3 T13: -0.0095 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.0398 L22: 0.7479 REMARK 3 L33: 0.7965 L12: -0.1112 REMARK 3 L13: -0.1016 L23: 0.1276 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.0288 S13: 0.0067 REMARK 3 S21: -0.0263 S22: 0.0191 S23: -0.0632 REMARK 3 S31: 0.0204 S32: 0.0069 S33: -0.0169 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0276 1.8024 17.9912 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0164 REMARK 3 T33: 0.0354 T12: 0.0003 REMARK 3 T13: 0.0010 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.0131 L22: 0.8384 REMARK 3 L33: 0.7147 L12: 0.0394 REMARK 3 L13: -0.0539 L23: 0.0407 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0032 S13: -0.0016 REMARK 3 S21: 0.0276 S22: -0.0056 S23: 0.0814 REMARK 3 S31: 0.0075 S32: -0.0340 S33: 0.0117 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 146 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1255 35.7958 18.4303 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.0174 REMARK 3 T33: 0.0205 T12: 0.0066 REMARK 3 T13: -0.0065 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.8617 L22: 0.8418 REMARK 3 L33: 0.8670 L12: -0.1369 REMARK 3 L13: -0.2359 L23: -0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.0322 S13: 0.0171 REMARK 3 S21: 0.0186 S22: 0.0233 S23: 0.0348 REMARK 3 S31: -0.0124 S32: -0.0571 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 146 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5632 32.2487 19.9371 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0132 REMARK 3 T33: 0.0396 T12: 0.0085 REMARK 3 T13: 0.0044 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.4934 L22: 0.8234 REMARK 3 L33: 0.9092 L12: -0.0388 REMARK 3 L13: -0.1269 L23: -0.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.0038 S13: 0.0057 REMARK 3 S21: -0.0537 S22: -0.0133 S23: -0.0619 REMARK 3 S31: 0.0074 S32: 0.0743 S33: 0.0122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4I4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : DIAMOND(001) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48087 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4I4P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 25% PEG4000, 0.2 M 1-BUTYL-3-METHYLIMIDAZOLIUM REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.05500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 A2G G 1 O5 GAL G 2 2.00 REMARK 500 O3 A2G F 1 O5 GAL F 2 2.18 REMARK 500 O5 A2G G 1 OG SER B 209 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 92.42 74.94 REMARK 500 THR A 123 -100.93 -89.15 REMARK 500 ASN B 5 62.60 -119.52 REMARK 500 ASN B 30 90.09 68.43 REMARK 500 THR B 123 -106.91 -97.40 REMARK 500 ASP B 138 0.11 -69.51 REMARK 500 ASN C 5 58.43 -119.55 REMARK 500 ASN C 30 91.64 72.99 REMARK 500 THR C 123 -96.75 -99.33 REMARK 500 ASN D 30 93.85 70.80 REMARK 500 THR D 123 -93.19 -106.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I4O RELATED DB: PDB REMARK 900 RELATED ID: 4I4P RELATED DB: PDB REMARK 900 RELATED ID: 4I4Q RELATED DB: PDB REMARK 900 RELATED ID: 4I4R RELATED DB: PDB REMARK 900 RELATED ID: 4I4S RELATED DB: PDB REMARK 900 RELATED ID: 4I4U RELATED DB: PDB REMARK 900 RELATED ID: 4I4V RELATED DB: PDB REMARK 900 RELATED ID: 4I4X RELATED DB: PDB DBREF 4I4Y A 1 146 PDB 4I4Y 4I4Y 1 146 DBREF 4I4Y B 1 146 PDB 4I4Y 4I4Y 1 146 DBREF 4I4Y C 1 146 PDB 4I4Y 4I4Y 1 146 DBREF 4I4Y D 1 146 PDB 4I4Y 4I4Y 1 146 SEQRES 1 A 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE SEQRES 2 A 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER SEQRES 3 A 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY SEQRES 4 A 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY SEQRES 5 A 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL SEQRES 6 A 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER SEQRES 7 A 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN SEQRES 8 A 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO SEQRES 9 A 146 ASN SER PHE ARG ILE TYR ASN LEU ALA SER ASP THR VAL SEQRES 10 A 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN SEQRES 11 A 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE SEQRES 12 A 146 GLU LEU VAL SEQRES 1 B 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE SEQRES 2 B 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER SEQRES 3 B 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY SEQRES 4 B 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY SEQRES 5 B 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL SEQRES 6 B 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER SEQRES 7 B 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN SEQRES 8 B 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO SEQRES 9 B 146 ASN SER PHE ARG ILE TYR ASN LEU ALA SER ASP THR VAL SEQRES 10 B 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN SEQRES 11 B 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE SEQRES 12 B 146 GLU LEU VAL SEQRES 1 C 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE SEQRES 2 C 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER SEQRES 3 C 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY SEQRES 4 C 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY SEQRES 5 C 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL SEQRES 6 C 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER SEQRES 7 C 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN SEQRES 8 C 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO SEQRES 9 C 146 ASN SER PHE ARG ILE TYR ASN LEU ALA SER ASP THR VAL SEQRES 10 C 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN SEQRES 11 C 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE SEQRES 12 C 146 GLU LEU VAL SEQRES 1 D 146 VAL ASN PHE PRO ASN ILE PRO ALA GLU GLY VAL GLN PHE SEQRES 2 D 146 ARG LEU ARG ALA ARG ASP THR GLY TYR VAL ILE TYR SER SEQRES 3 D 146 ARG THR GLU ASN PRO PRO LEU VAL TRP GLN TYR ASN GLY SEQRES 4 D 146 PRO PRO TYR ASP ASP GLN LEU PHE THR LEU ILE TYR GLY SEQRES 5 D 146 THR GLY PRO ARG LYS ASN LEU TYR ALA ILE LYS SER VAL SEQRES 6 D 146 PRO ASN GLY ARG VAL LEU PHE SER ARG THR SER ALA SER SEQRES 7 D 146 PRO TYR VAL GLY ASN ILE ALA GLY ASP GLY THR TYR ASN SEQRES 8 D 146 ASP ASN TRP PHE GLN PHE ILE GLN ASP ASP ASN ASP PRO SEQRES 9 D 146 ASN SER PHE ARG ILE TYR ASN LEU ALA SER ASP THR VAL SEQRES 10 D 146 LEU TYR SER ARG THR THR ALA ASP PRO LYS PHE GLY ASN SEQRES 11 D 146 PHE THR GLY ALA LYS TYR ASP ASP GLN LEU TRP HIS PHE SEQRES 12 D 146 GLU LEU VAL HET A2G E 1 14 HET GAL E 2 11 HET A2G F 1 14 HET GAL F 2 11 HET A2G G 1 14 HET GAL G 2 11 HET A2G H 1 14 HET GAL H 2 11 HET A2G I 1 14 HET GAL I 2 11 HET A2G J 1 14 HET GAL J 2 11 HET TRS A 201 8 HET SER B 203 7 HET SER B 206 7 HET SER B 209 7 HET SER C 203 7 HET SER D 203 7 HET SER D 206 7 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM SER SERINE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN TRS TRIS BUFFER FORMUL 5 A2G 6(C8 H15 N O6) FORMUL 5 GAL 6(C6 H12 O6) FORMUL 11 TRS C4 H12 N O3 1+ FORMUL 12 SER 6(C3 H7 N O3) FORMUL 18 HOH *382(H2 O) HELIX 1 1 TYR A 42 GLN A 45 5 4 HELIX 2 2 THR A 53 LYS A 57 5 5 HELIX 3 3 TYR A 90 ASN A 93 5 4 HELIX 4 4 TYR A 136 GLN A 139 5 4 HELIX 5 5 TYR B 42 GLN B 45 5 4 HELIX 6 6 THR B 53 LYS B 57 5 5 HELIX 7 7 TYR B 90 ASN B 93 5 4 HELIX 8 8 TYR B 136 GLN B 139 5 4 HELIX 9 9 TYR C 42 GLN C 45 5 4 HELIX 10 10 THR C 53 LYS C 57 5 5 HELIX 11 11 TYR C 90 ASN C 93 5 4 HELIX 12 12 TYR C 136 GLN C 139 5 4 HELIX 13 13 TYR D 42 GLN D 45 5 4 HELIX 14 14 THR D 53 LYS D 57 5 5 HELIX 15 15 TYR D 90 ASN D 93 5 4 HELIX 16 16 TYR D 136 GLN D 139 5 4 SHEET 1 A 2 PHE A 13 ALA A 17 0 SHEET 2 A 2 TRP A 141 LEU A 145 -1 O GLU A 144 N ARG A 14 SHEET 1 B 2 VAL A 23 SER A 26 0 SHEET 2 B 2 VAL A 34 TYR A 37 -1 O TYR A 37 N VAL A 23 SHEET 1 C 2 PHE A 47 TYR A 51 0 SHEET 2 C 2 TYR A 60 SER A 64 -1 O ALA A 61 N ILE A 50 SHEET 1 D 2 VAL A 70 SER A 73 0 SHEET 2 D 2 VAL A 81 ILE A 84 -1 O ILE A 84 N VAL A 70 SHEET 1 E 4 PHE A 95 GLN A 99 0 SHEET 2 E 4 PHE A 107 ASN A 111 -1 O TYR A 110 N GLN A 96 SHEET 3 E 4 THR A 116 SER A 120 -1 O THR A 116 N ASN A 111 SHEET 4 E 4 PHE A 128 PHE A 131 -1 O PHE A 131 N VAL A 117 SHEET 1 F 2 PHE B 13 ALA B 17 0 SHEET 2 F 2 TRP B 141 LEU B 145 -1 O GLU B 144 N ARG B 14 SHEET 1 G 2 VAL B 23 SER B 26 0 SHEET 2 G 2 VAL B 34 TYR B 37 -1 O TYR B 37 N VAL B 23 SHEET 1 H 2 PHE B 47 TYR B 51 0 SHEET 2 H 2 TYR B 60 SER B 64 -1 O LYS B 63 N THR B 48 SHEET 1 I 2 VAL B 70 SER B 73 0 SHEET 2 I 2 VAL B 81 ILE B 84 -1 O ILE B 84 N VAL B 70 SHEET 1 J 4 PHE B 95 GLN B 99 0 SHEET 2 J 4 PHE B 107 ASN B 111 -1 O ARG B 108 N ILE B 98 SHEET 3 J 4 THR B 116 SER B 120 -1 O THR B 116 N ASN B 111 SHEET 4 J 4 PHE B 128 PHE B 131 -1 O GLY B 129 N TYR B 119 SHEET 1 K 2 PHE C 13 ALA C 17 0 SHEET 2 K 2 TRP C 141 LEU C 145 -1 O GLU C 144 N ARG C 14 SHEET 1 L 2 VAL C 23 SER C 26 0 SHEET 2 L 2 VAL C 34 TYR C 37 -1 O TYR C 37 N VAL C 23 SHEET 1 M 2 PHE C 47 TYR C 51 0 SHEET 2 M 2 TYR C 60 SER C 64 -1 O LYS C 63 N THR C 48 SHEET 1 N 2 VAL C 70 SER C 73 0 SHEET 2 N 2 VAL C 81 ILE C 84 -1 O ILE C 84 N VAL C 70 SHEET 1 O 4 PHE C 95 GLN C 99 0 SHEET 2 O 4 PHE C 107 ASN C 111 -1 O TYR C 110 N GLN C 96 SHEET 3 O 4 THR C 116 SER C 120 -1 O THR C 116 N ASN C 111 SHEET 4 O 4 PHE C 128 PHE C 131 -1 O PHE C 131 N VAL C 117 SHEET 1 P 2 PHE D 13 ALA D 17 0 SHEET 2 P 2 TRP D 141 LEU D 145 -1 O GLU D 144 N ARG D 14 SHEET 1 Q 2 VAL D 23 SER D 26 0 SHEET 2 Q 2 VAL D 34 TYR D 37 -1 O TRP D 35 N TYR D 25 SHEET 1 R 2 PHE D 47 TYR D 51 0 SHEET 2 R 2 TYR D 60 SER D 64 -1 O LYS D 63 N THR D 48 SHEET 1 S 2 VAL D 70 SER D 73 0 SHEET 2 S 2 VAL D 81 ILE D 84 -1 O ILE D 84 N VAL D 70 SHEET 1 T 4 PHE D 95 GLN D 99 0 SHEET 2 T 4 PHE D 107 ASN D 111 -1 O TYR D 110 N GLN D 96 SHEET 3 T 4 THR D 116 SER D 120 -1 O THR D 116 N ASN D 111 SHEET 4 T 4 PHE D 128 PHE D 131 -1 O GLY D 129 N TYR D 119 LINK OG SER B 203 C1 A2G E 1 1555 1555 1.44 LINK OG SER B 206 C1 A2G F 1 1555 1555 1.44 LINK OG SER B 209 C1 A2G G 1 1555 1555 1.44 LINK OG SER C 203 C1 A2G H 1 1555 1555 1.45 LINK OG SER D 203 C1 A2G I 1 1555 1555 1.45 LINK OG SER D 206 C1 A2G J 1 1555 1555 1.44 LINK O3 A2G E 1 C1 GAL E 2 1555 1555 1.99 LINK O3 A2G F 1 C1 GAL F 2 1555 1555 1.37 LINK O3 A2G G 1 C1 GAL G 2 1555 1555 1.35 LINK O3 A2G H 1 C1 GAL H 2 1555 1555 1.41 LINK O3 A2G I 1 C1 GAL I 2 1555 1555 1.54 LINK O3 A2G J 1 C1 GAL J 2 1555 1555 1.56 CISPEP 1 PRO A 31 PRO A 32 0 0.10 CISPEP 2 SER A 78 PRO A 79 0 -2.28 CISPEP 3 ASP A 125 PRO A 126 0 -4.69 CISPEP 4 PRO B 31 PRO B 32 0 -0.72 CISPEP 5 SER B 78 PRO B 79 0 -3.85 CISPEP 6 ASP B 125 PRO B 126 0 -7.83 CISPEP 7 PRO C 31 PRO C 32 0 -5.96 CISPEP 8 SER C 78 PRO C 79 0 -3.57 CISPEP 9 ASP C 125 PRO C 126 0 -7.30 CISPEP 10 PRO D 31 PRO D 32 0 -1.32 CISPEP 11 SER D 78 PRO D 79 0 -2.14 CISPEP 12 ASP D 125 PRO D 126 0 -4.87 CRYST1 66.390 70.110 71.520 90.00 106.67 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015063 0.000000 0.004510 0.00000 SCALE2 0.000000 0.014263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014596 0.00000