HEADER HYDROLASE 29-NOV-12 4I6L TITLE CRYSTAL STRUCTURE OF OTUB1 IN COMPLEX WITH UBIQUITIN VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN THIOESTERASE OTUB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 45-271; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME OTUB1, OTU DOMAIN-CONTAINING COMPND 6 UBIQUITIN ALDEHYDE-BINDING PROTEIN 1, OTUBAIN-1, HOTU1, UBIQUITIN- COMPND 7 SPECIFIC-PROCESSING PROTEASE OTUB1; COMPND 8 EC: 3.4.19.12; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: UBIQUITIN; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: UNP RESIDUES 77-150; COMPND 15 SYNONYM: UBIQUITIN; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OTUB1, OTB1, OTU1, HSPC263; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBC; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEUBIQUITINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.JUANG,F.SICHERI REVDAT 4 20-SEP-23 4I6L 1 SEQADV REVDAT 3 20-FEB-13 4I6L 1 JRNL REVDAT 2 06-FEB-13 4I6L 1 JRNL REVDAT 1 16-JAN-13 4I6L 0 JRNL AUTH A.ERNST,G.AVVAKUMOV,J.TONG,Y.FAN,Y.ZHAO,P.ALBERTS,A.PERSAUD, JRNL AUTH 2 J.R.WALKER,A.M.NECULAI,D.NECULAI,A.VOROBYOV,P.GARG,L.BEATTY, JRNL AUTH 3 P.K.CHAN,Y.C.JUANG,M.C.LANDRY,C.YEH,E.ZEQIRAJ,K.KARAMBOULAS, JRNL AUTH 4 A.ALLALI-HASSANI,M.VEDADI,M.TYERS,J.MOFFAT,F.SICHERI, JRNL AUTH 5 L.PELLETIER,D.DUROCHER,B.RAUGHT,D.ROTIN,J.YANG,M.F.MORAN, JRNL AUTH 6 S.DHE-PAGANON,S.S.SIDHU JRNL TITL A STRATEGY FOR MODULATION OF ENZYMES IN THE UBIQUITIN JRNL TITL 2 SYSTEM. JRNL REF SCIENCE V. 339 590 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23287719 JRNL DOI 10.1126/SCIENCE.1230161 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 12212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2300 - 3.9484 0.99 3286 141 0.1943 0.2401 REMARK 3 2 3.9484 - 3.1342 1.00 3148 162 0.2187 0.2531 REMARK 3 3 3.1342 - 2.7381 0.98 3065 159 0.2588 0.3232 REMARK 3 4 2.7381 - 2.4877 0.69 2133 118 0.2667 0.3026 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 16.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.95160 REMARK 3 B22 (A**2) : -2.24830 REMARK 3 B33 (A**2) : -0.70330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2444 REMARK 3 ANGLE : 0.715 3288 REMARK 3 CHIRALITY : 0.053 361 REMARK 3 PLANARITY : 0.003 420 REMARK 3 DIHEDRAL : 13.329 925 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 43:76) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3726 -16.8023 -3.8112 REMARK 3 T TENSOR REMARK 3 T11: 1.0223 T22: 0.4317 REMARK 3 T33: 0.5188 T12: 0.1146 REMARK 3 T13: -0.3390 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.4048 L22: 0.4537 REMARK 3 L33: 1.7878 L12: 0.0217 REMARK 3 L13: -0.7367 L23: 0.7855 REMARK 3 S TENSOR REMARK 3 S11: -0.2528 S12: 0.3724 S13: 0.7957 REMARK 3 S21: -0.4403 S22: -0.0667 S23: 0.2119 REMARK 3 S31: -1.6882 S32: -0.2540 S33: 0.5852 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 77:185) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7043 -36.5435 9.2864 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: 0.0440 REMARK 3 T33: 0.1010 T12: -0.0293 REMARK 3 T13: -0.0288 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.4382 L22: 2.0351 REMARK 3 L33: 2.6274 L12: 0.2522 REMARK 3 L13: 0.3223 L23: 1.5403 REMARK 3 S TENSOR REMARK 3 S11: -0.0813 S12: 0.0198 S13: 0.0145 REMARK 3 S21: 0.0002 S22: -0.1274 S23: 0.2503 REMARK 3 S31: -0.0620 S32: -0.0729 S33: 0.1393 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 186:271) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2813 -22.7732 12.8918 REMARK 3 T TENSOR REMARK 3 T11: 0.1834 T22: 0.0973 REMARK 3 T33: 0.1342 T12: -0.0571 REMARK 3 T13: -0.0404 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.9826 L22: 3.0364 REMARK 3 L33: 3.0661 L12: 1.0877 REMARK 3 L13: 0.0773 L23: 1.5420 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: 0.0634 S13: 0.0007 REMARK 3 S21: -0.3599 S22: -0.0609 S23: 0.1775 REMARK 3 S31: -0.6619 S32: 0.1784 S33: 0.1046 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ -1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2242 -7.2748 16.7792 REMARK 3 T TENSOR REMARK 3 T11: 0.4132 T22: 0.1719 REMARK 3 T33: 0.2507 T12: -0.0269 REMARK 3 T13: 0.1079 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 4.3258 L22: 8.6330 REMARK 3 L33: 4.3369 L12: 5.3066 REMARK 3 L13: 4.1512 L23: 5.9585 REMARK 3 S TENSOR REMARK 3 S11: -0.4134 S12: 0.6132 S13: -0.3085 REMARK 3 S21: -0.6515 S22: 0.5048 S23: -0.6784 REMARK 3 S31: -0.1191 S32: 0.1180 S33: -0.2120 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 8:17) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9758 -10.4917 12.8027 REMARK 3 T TENSOR REMARK 3 T11: 0.4294 T22: 0.2192 REMARK 3 T33: 0.2674 T12: -0.1335 REMARK 3 T13: 0.1549 T23: -0.0717 REMARK 3 L TENSOR REMARK 3 L11: 0.9809 L22: 1.3304 REMARK 3 L33: 1.7562 L12: -0.4821 REMARK 3 L13: -0.4520 L23: -1.0788 REMARK 3 S TENSOR REMARK 3 S11: -0.4120 S12: 0.3207 S13: -0.4330 REMARK 3 S21: -1.0004 S22: 0.5711 S23: -0.5149 REMARK 3 S31: 0.0692 S32: 0.0724 S33: 0.1605 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 18:22) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1220 3.6116 21.0953 REMARK 3 T TENSOR REMARK 3 T11: 0.3047 T22: 0.1112 REMARK 3 T33: 0.3119 T12: -0.0231 REMARK 3 T13: -0.0087 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 4.7367 L22: 1.6461 REMARK 3 L33: 9.4759 L12: -2.1923 REMARK 3 L13: 0.1249 L23: 0.7479 REMARK 3 S TENSOR REMARK 3 S11: -0.1271 S12: 0.1466 S13: 0.0023 REMARK 3 S21: -0.7812 S22: 0.2260 S23: -0.8336 REMARK 3 S31: -0.4394 S32: -0.0839 S33: -0.0634 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 23:34) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8169 -1.5882 12.6243 REMARK 3 T TENSOR REMARK 3 T11: 0.3680 T22: 0.1721 REMARK 3 T33: 0.1144 T12: -0.0314 REMARK 3 T13: -0.0128 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.2849 L22: 4.9469 REMARK 3 L33: 1.7649 L12: -0.1950 REMARK 3 L13: -0.0603 L23: 2.9536 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.5634 S13: 0.1559 REMARK 3 S21: -1.2731 S22: -0.0723 S23: -0.0065 REMARK 3 S31: -0.7417 S32: 0.0136 S33: 0.0948 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 35:44) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3449 -6.1251 14.5033 REMARK 3 T TENSOR REMARK 3 T11: 0.3092 T22: 0.3347 REMARK 3 T33: 0.3661 T12: -0.1115 REMARK 3 T13: -0.1489 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.2334 L22: 3.4979 REMARK 3 L33: 5.4231 L12: -1.4438 REMARK 3 L13: 0.0656 L23: 0.4762 REMARK 3 S TENSOR REMARK 3 S11: -0.2430 S12: 0.2490 S13: 0.0128 REMARK 3 S21: -0.9403 S22: 0.0861 S23: 0.8034 REMARK 3 S31: -0.0210 S32: -1.1208 S33: 0.1274 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 45:56) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8809 -4.7616 26.3390 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.2572 REMARK 3 T33: 0.2118 T12: -0.0535 REMARK 3 T13: -0.0209 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 4.5548 L22: 5.4037 REMARK 3 L33: 7.0214 L12: 3.4189 REMARK 3 L13: -3.7421 L23: -6.0066 REMARK 3 S TENSOR REMARK 3 S11: 0.2431 S12: -0.0708 S13: 0.4994 REMARK 3 S21: 0.1462 S22: 0.2592 S23: 0.8586 REMARK 3 S31: -0.0363 S32: -0.8247 S33: -0.3444 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 57:65) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7687 -4.2419 26.4265 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.2387 REMARK 3 T33: 0.2741 T12: -0.1074 REMARK 3 T13: -0.0128 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 3.9820 L22: 2.1089 REMARK 3 L33: 4.3759 L12: 0.3138 REMARK 3 L13: 0.7904 L23: 1.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: -0.4729 S13: -0.1779 REMARK 3 S21: -0.1605 S22: 0.0153 S23: -0.7548 REMARK 3 S31: -0.2835 S32: 0.4958 S33: -0.1142 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 66:73) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4677 -11.5498 17.5928 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.1929 REMARK 3 T33: 0.1735 T12: -0.1141 REMARK 3 T13: 0.0129 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.1327 L22: 7.9952 REMARK 3 L33: 8.5766 L12: 1.8016 REMARK 3 L13: 1.7768 L23: 0.8256 REMARK 3 S TENSOR REMARK 3 S11: -0.1972 S12: 0.0416 S13: 0.2703 REMARK 3 S21: -0.6865 S22: 0.1937 S23: 0.2096 REMARK 3 S31: -0.0924 S32: -0.5478 S33: 0.1309 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12681 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ZFY, 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M MES, PH REMARK 280 6.5, AND 20% (W/V) PEG8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.61900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.61900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.22200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.53450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.22200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.53450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.61900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.22200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.53450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.61900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.22200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.53450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 62 REMARK 465 GLU A 63 REMARK 465 ASP A 64 REMARK 465 ASP A 237 REMARK 465 ARG A 238 REMARK 465 GLY A 239 REMARK 465 GLU A 240 REMARK 465 GLY A 241 REMARK 465 GLY A 242 REMARK 465 THR A 243 REMARK 465 THR A 244 REMARK 465 ASN A 245 REMARK 465 ARG B 74 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 270 O HOH A 334 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 59 44.51 -79.03 REMARK 500 GLU A 60 -12.60 -148.80 REMARK 500 GLU A 186 43.24 -102.77 REMARK 500 CYS A 212 -12.66 75.02 REMARK 500 ASP A 216 -164.09 -126.75 REMARK 500 PRO A 263 110.70 -39.31 REMARK 500 ASP B 32 30.18 -72.53 REMARK 500 LYS B 33 -21.70 -148.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 4I6L A 45 271 UNP Q96FW1 OTUB1_HUMAN 45 271 DBREF 4I6L B 1 74 UNP P0CG48 UBC_HUMAN 77 150 SEQADV 4I6L GLY A 43 UNP Q96FW1 EXPRESSION TAG SEQADV 4I6L SER A 44 UNP Q96FW1 EXPRESSION TAG SEQADV 4I6L SER A 91 UNP Q96FW1 CYS 91 ENGINEERED MUTATION SEQADV 4I6L GLY B -1 UNP P0CG48 EXPRESSION TAG SEQADV 4I6L SER B 0 UNP P0CG48 EXPRESSION TAG SEQADV 4I6L LYS B 42 UNP P0CG48 ARG 118 VARIANT SEQADV 4I6L LEU B 44 UNP P0CG48 ILE 120 VARIANT SEQADV 4I6L ARG B 47 UNP P0CG48 GLY 123 VARIANT SEQADV 4I6L HIS B 62 UNP P0CG48 GLN 138 VARIANT SEQADV 4I6L PHE B 66 UNP P0CG48 THR 142 VARIANT SEQADV 4I6L TYR B 68 UNP P0CG48 HIS 144 VARIANT SEQRES 1 A 229 GLY SER ASN PRO LEU VAL SER GLU ARG LEU GLU LEU SER SEQRES 2 A 229 VAL LEU TYR LYS GLU TYR ALA GLU ASP ASP ASN ILE TYR SEQRES 3 A 229 GLN GLN LYS ILE LYS ASP LEU HIS LYS LYS TYR SER TYR SEQRES 4 A 229 ILE ARG LYS THR ARG PRO ASP GLY ASN SER PHE TYR ARG SEQRES 5 A 229 ALA PHE GLY PHE SER HIS LEU GLU ALA LEU LEU ASP ASP SEQRES 6 A 229 SER LYS GLU LEU GLN ARG PHE LYS ALA VAL SER ALA LYS SEQRES 7 A 229 SER LYS GLU ASP LEU VAL SER GLN GLY PHE THR GLU PHE SEQRES 8 A 229 THR ILE GLU ASP PHE HIS ASN THR PHE MET ASP LEU ILE SEQRES 9 A 229 GLU GLN VAL GLU LYS GLN THR SER VAL ALA ASP LEU LEU SEQRES 10 A 229 ALA SER PHE ASN ASP GLN SER THR SER ASP TYR LEU VAL SEQRES 11 A 229 VAL TYR LEU ARG LEU LEU THR SER GLY TYR LEU GLN ARG SEQRES 12 A 229 GLU SER LYS PHE PHE GLU HIS PHE ILE GLU GLY GLY ARG SEQRES 13 A 229 THR VAL LYS GLU PHE CYS GLN GLN GLU VAL GLU PRO MET SEQRES 14 A 229 CYS LYS GLU SER ASP HIS ILE HIS ILE ILE ALA LEU ALA SEQRES 15 A 229 GLN ALA LEU SER VAL SER ILE GLN VAL GLU TYR MET ASP SEQRES 16 A 229 ARG GLY GLU GLY GLY THR THR ASN PRO HIS ILE PHE PRO SEQRES 17 A 229 GLU GLY SER GLU PRO LYS VAL TYR LEU LEU TYR ARG PRO SEQRES 18 A 229 GLY HIS TYR ASP ILE LEU TYR LYS SEQRES 1 B 76 GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 B 76 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 B 76 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 B 76 PRO ASP GLN GLN LYS LEU LEU PHE ALA ARG LYS GLN LEU SEQRES 5 B 76 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE HIS LYS SEQRES 6 B 76 GLU SER PHE LEU TYR LEU VAL LEU ARG LEU ARG FORMUL 3 HOH *84(H2 O) HELIX 1 1 SER A 55 TYR A 61 5 7 HELIX 2 2 ASN A 66 LYS A 77 1 12 HELIX 3 3 ASN A 90 LEU A 104 1 15 HELIX 4 4 ASP A 107 GLN A 128 1 22 HELIX 5 5 THR A 131 LYS A 151 1 21 HELIX 6 6 SER A 154 PHE A 162 1 9 HELIX 7 7 ASP A 164 GLU A 186 1 23 HELIX 8 8 GLU A 186 GLU A 191 1 6 HELIX 9 9 HIS A 192 ILE A 194 5 3 HELIX 10 10 THR A 199 VAL A 208 1 10 HELIX 11 11 ASP A 216 LEU A 227 1 12 HELIX 12 12 THR B 22 GLY B 35 1 14 HELIX 13 13 PRO B 37 ASP B 39 5 3 HELIX 14 14 THR B 55 ASN B 60 5 6 SHEET 1 A 6 VAL A 48 GLU A 53 0 SHEET 2 A 6 TYR A 81 THR A 85 -1 O ILE A 82 N LEU A 52 SHEET 3 A 6 HIS A 265 TYR A 270 -1 O ILE A 268 N ARG A 83 SHEET 4 A 6 VAL A 257 ARG A 262 -1 N TYR A 258 O LEU A 269 SHEET 5 A 6 ILE A 231 TYR A 235 1 N GLU A 234 O TYR A 261 SHEET 6 A 6 HIS A 247 PHE A 249 -1 O PHE A 249 N ILE A 231 SHEET 1 B 5 THR B 12 VAL B 17 0 SHEET 2 B 5 MET B 1 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 B 5 PHE B 66 LEU B 71 1 O LEU B 69 N LYS B 6 SHEET 4 B 5 GLN B 41 PHE B 45 -1 N LEU B 44 O TYR B 68 SHEET 5 B 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SSBOND 1 CYS A 212 CYS A 212 1555 3555 2.03 CISPEP 1 PHE A 249 PRO A 250 0 0.45 CRYST1 92.444 109.069 73.238 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010817 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013654 0.00000