HEADER OXIDOREDUCTASE 05-DEC-12 4I9B TITLE STRUCTURE OF AMINOALDEHYDE DEHYDROGENASE 1 FROM SOLANUM LYCOPERSIUM TITLE 2 (SLAMADH1) WITH A THIOHEMIACETAL INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BETAINE ALDEHYDE DEHYROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AMINOALDEHYDE DEHYDROGENASE, AMADH; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_COMMON: TOMATO; SOURCE 4 ORGANISM_TAXID: 4081; SOURCE 5 GENE: SOLYC06G071290.2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDFDUET KEYWDS ALDH10 FAMILY FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MORERA,A.VIGOUROUX,D.KOPECNY REVDAT 4 20-NOV-24 4I9B 1 REMARK REVDAT 3 08-NOV-23 4I9B 1 REMARK SEQADV LINK REVDAT 2 01-JAN-14 4I9B 1 JRNL REVDAT 1 20-FEB-13 4I9B 0 JRNL AUTH D.KOPECNY,R.KONCITIKOVA,M.TYLICHOVA,A.VIGOUROUX, JRNL AUTH 2 H.MOSKALIKOVA,M.SOURAL,M.SEBELA,S.MORERA JRNL TITL PLANT ALDH10 FAMILY: IDENTIFYING CRITICAL RESIDUES FOR JRNL TITL 2 SUBSTRATE SPECIFICITY AND TRAPPING A THIOHEMIACETAL JRNL TITL 3 INTERMEDIATE. JRNL REF J.BIOL.CHEM. V. 288 9491 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23408433 JRNL DOI 10.1074/JBC.M112.443952 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 74515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3725 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.28 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5314 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2432 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5049 REMARK 3 BIN R VALUE (WORKING SET) : 0.2408 REMARK 3 BIN FREE R VALUE : 0.2904 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 265 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 694 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.36990 REMARK 3 B22 (A**2) : 6.18270 REMARK 3 B33 (A**2) : 5.18720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.202 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.157 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.150 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.135 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7835 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10628 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2708 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 176 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1144 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7835 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1053 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9942 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.40 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.58 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75000 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IWJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, 100MM HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.07500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.08500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.39500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.08500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.07500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.39500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLN A -1 REMARK 465 ASP A 0 REMARK 465 PRO A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 ASN A 5 REMARK 465 SER A 502 REMARK 465 LYS A 503 REMARK 465 ASN A 504 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 GLN B -1 REMARK 465 ASP B 0 REMARK 465 PRO B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 ASN B 5 REMARK 465 SER B 502 REMARK 465 LYS B 503 REMARK 465 ASN B 504 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 260 CD OE1 OE2 REMARK 480 GLU B 260 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 66 -61.65 -136.65 REMARK 500 ASN A 139 56.23 -93.31 REMARK 500 ALA A 190 81.83 -153.85 REMARK 500 VAL A 254 40.06 35.34 REMARK 500 LEU A 261 -164.07 -111.55 REMARK 500 ILE A 287 -33.42 -130.28 REMARK 500 LEU A 422 -75.49 -90.87 REMARK 500 GLN A 452 -31.73 96.32 REMARK 500 LYS A 464 -136.84 53.53 REMARK 500 LEU A 472 172.98 66.94 REMARK 500 GLN B 12 -169.22 -104.03 REMARK 500 TRP B 66 -60.88 -134.97 REMARK 500 ALA B 190 79.30 -155.90 REMARK 500 LYS B 264 58.94 -141.97 REMARK 500 SER B 325 -167.01 -162.48 REMARK 500 LEU B 422 -76.07 -87.92 REMARK 500 GLN B 452 -36.21 97.12 REMARK 500 LYS B 464 -137.84 59.68 REMARK 500 LEU B 472 176.17 65.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD A 601 REMARK 610 NAD B 601 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 31 O REMARK 620 2 ASP A 99 O 89.5 REMARK 620 3 ASP A 99 OD1 115.1 81.5 REMARK 620 4 LEU A 189 O 158.6 99.6 85.5 REMARK 620 5 HOH A 778 O 86.1 175.6 100.0 84.6 REMARK 620 6 HOH A 866 O 83.4 89.0 158.9 77.5 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 99 O REMARK 620 2 ASP B 99 OD1 86.2 REMARK 620 3 LEU B 189 O 101.2 92.3 REMARK 620 4 HOH B 733 O 161.2 110.3 87.4 REMARK 620 5 HOH B 857 O 81.0 163.3 79.8 84.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1KA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1KA B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IWJ RELATED DB: PDB REMARK 900 RELATED ID: 3IWK RELATED DB: PDB REMARK 900 RELATED ID: 4I8P RELATED DB: PDB REMARK 900 RELATED ID: 4I8Q RELATED DB: PDB DBREF 4I9B A 2 504 UNP Q56R04 Q56R04_SOLLC 2 504 DBREF 4I9B B 2 504 UNP Q56R04 Q56R04_SOLLC 2 504 SEQADV 4I9B MET A -12 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B GLY A -11 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B SER A -10 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B SER A -9 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS A -8 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS A -7 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS A -6 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS A -5 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS A -4 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS A -3 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B SER A -2 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B GLN A -1 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B ASP A 0 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B PRO A 1 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B MET B -12 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B GLY B -11 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B SER B -10 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B SER B -9 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS B -8 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS B -7 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS B -6 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS B -5 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS B -4 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B HIS B -3 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B SER B -2 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B GLN B -1 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B ASP B 0 UNP Q56R04 EXPRESSION TAG SEQADV 4I9B PRO B 1 UNP Q56R04 EXPRESSION TAG SEQRES 1 A 517 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 517 PRO ALA ASN ARG ASN VAL PRO ILE PRO ARG ARG GLN LEU SEQRES 3 A 517 TYR ILE GLY GLY GLU TRP ARG GLU PRO VAL LYS LYS ASN SEQRES 4 A 517 ARG ILE PRO ILE ILE ASN PRO ALA THR GLU GLU ILE ILE SEQRES 5 A 517 GLY ASP ILE PRO ALA ALA THR ALA GLU ASP VAL ASP ILE SEQRES 6 A 517 ALA VAL GLU ALA ALA ARG LYS ALA ILE ALA ARG ASP ASP SEQRES 7 A 517 TRP GLY SER THR THR GLY ALA GLN ARG ALA LYS TYR LEU SEQRES 8 A 517 ARG ALA ILE ALA ALA LYS VAL LEU GLU LYS LYS SER VAL SEQRES 9 A 517 LEU ALA THR LEU GLU SER LEU ASP SER GLY LYS THR LEU SEQRES 10 A 517 TYR GLU SER ALA ALA ASP MET ASP ASP VAL ALA GLY CYS SEQRES 11 A 517 PHE GLU TYR TYR ALA GLY LEU ALA GLU ALA LEU ASP SER SEQRES 12 A 517 ARG ARG MET THR PRO VAL ASN LEU ASN SER ASP SER TYR SEQRES 13 A 517 LYS SER TYR VAL LEU ARG GLU PRO LEU GLY VAL VAL GLY SEQRES 14 A 517 LEU ILE THR PRO TRP ASN TYR PRO LEU LEU MET ALA ILE SEQRES 15 A 517 TRP LYS VAL ALA PRO ALA LEU ALA ALA GLY CYS ALA ALA SEQRES 16 A 517 ILE LEU LYS PRO SER GLU LEU ALA SER ILE THR CYS LEU SEQRES 17 A 517 GLU LEU GLY GLU ILE CYS ARG GLU ILE GLY LEU PRO SER SEQRES 18 A 517 GLY ALA LEU ASN ILE LEU THR GLY LEU GLY PRO GLU ALA SEQRES 19 A 517 GLY GLY PRO LEU ALA SER HIS PRO HIS VAL ASP LYS ILE SEQRES 20 A 517 SER PHE THR GLY SER GLY PRO THR GLY SER LYS ILE MET SEQRES 21 A 517 THR ALA ALA ALA GLN LEU VAL LYS PRO VAL SER LEU GLU SEQRES 22 A 517 LEU GLY GLY LYS SER PRO ILE VAL VAL PHE ASP ASP ILE SEQRES 23 A 517 ASP ASN LEU ASP ILE ALA ALA GLU TRP THR LEU PHE GLY SEQRES 24 A 517 ILE PHE ALA ASN THR GLY GLN VAL CYS SER ALA THR SER SEQRES 25 A 517 ARG LEU ILE VAL GLN GLU ASN ILE ALA SER ALA PHE MET SEQRES 26 A 517 ASP ARG LEU LEU LYS TRP THR LYS ASN ILE LYS ILE SER SEQRES 27 A 517 ASP PRO LEU GLU GLU ASP CYS LYS LEU GLY PRO VAL VAL SEQRES 28 A 517 SER ALA GLY GLN TYR GLU LYS VAL LEU LYS PHE ILE SER SEQRES 29 A 517 ASN ALA LYS SER GLU GLY ALA THR ILE LEU CYS GLY GLY SEQRES 30 A 517 GLU ARG PRO GLN HIS LEU LYS LYS GLY TYR TYR VAL GLN SEQRES 31 A 517 PRO THR ILE ILE THR ASP VAL ASN THR SER MET GLU ILE SEQRES 32 A 517 TRP LYS GLU GLU VAL PHE GLY PRO VAL LEU CYS VAL LYS SEQRES 33 A 517 THR PHE LYS THR GLU GLU GLN ALA ILE GLU LEU ALA ASN SEQRES 34 A 517 ASP THR LYS TYR GLY LEU GLY ALA ALA VAL MET SER LYS SEQRES 35 A 517 ASP VAL LYS ARG CYS GLU ARG PHE THR LYS ALA PHE GLN SEQRES 36 A 517 THR GLY ILE ILE TRP ILE ASN CYS SER GLN PRO THR PHE SEQRES 37 A 517 ASN GLU LEU PRO TRP GLY GLY LYS LYS ARG SER GLY PHE SEQRES 38 A 517 GLY ARG ASP LEU GLY LYS TRP GLY LEU GLU ASN PHE LEU SEQRES 39 A 517 ASN ILE LYS GLN VAL THR GLU TYR THR SER ALA GLU PRO SEQRES 40 A 517 LEU ALA PHE TYR LYS SER PRO SER LYS ASN SEQRES 1 B 517 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 517 PRO ALA ASN ARG ASN VAL PRO ILE PRO ARG ARG GLN LEU SEQRES 3 B 517 TYR ILE GLY GLY GLU TRP ARG GLU PRO VAL LYS LYS ASN SEQRES 4 B 517 ARG ILE PRO ILE ILE ASN PRO ALA THR GLU GLU ILE ILE SEQRES 5 B 517 GLY ASP ILE PRO ALA ALA THR ALA GLU ASP VAL ASP ILE SEQRES 6 B 517 ALA VAL GLU ALA ALA ARG LYS ALA ILE ALA ARG ASP ASP SEQRES 7 B 517 TRP GLY SER THR THR GLY ALA GLN ARG ALA LYS TYR LEU SEQRES 8 B 517 ARG ALA ILE ALA ALA LYS VAL LEU GLU LYS LYS SER VAL SEQRES 9 B 517 LEU ALA THR LEU GLU SER LEU ASP SER GLY LYS THR LEU SEQRES 10 B 517 TYR GLU SER ALA ALA ASP MET ASP ASP VAL ALA GLY CYS SEQRES 11 B 517 PHE GLU TYR TYR ALA GLY LEU ALA GLU ALA LEU ASP SER SEQRES 12 B 517 ARG ARG MET THR PRO VAL ASN LEU ASN SER ASP SER TYR SEQRES 13 B 517 LYS SER TYR VAL LEU ARG GLU PRO LEU GLY VAL VAL GLY SEQRES 14 B 517 LEU ILE THR PRO TRP ASN TYR PRO LEU LEU MET ALA ILE SEQRES 15 B 517 TRP LYS VAL ALA PRO ALA LEU ALA ALA GLY CYS ALA ALA SEQRES 16 B 517 ILE LEU LYS PRO SER GLU LEU ALA SER ILE THR CYS LEU SEQRES 17 B 517 GLU LEU GLY GLU ILE CYS ARG GLU ILE GLY LEU PRO SER SEQRES 18 B 517 GLY ALA LEU ASN ILE LEU THR GLY LEU GLY PRO GLU ALA SEQRES 19 B 517 GLY GLY PRO LEU ALA SER HIS PRO HIS VAL ASP LYS ILE SEQRES 20 B 517 SER PHE THR GLY SER GLY PRO THR GLY SER LYS ILE MET SEQRES 21 B 517 THR ALA ALA ALA GLN LEU VAL LYS PRO VAL SER LEU GLU SEQRES 22 B 517 LEU GLY GLY LYS SER PRO ILE VAL VAL PHE ASP ASP ILE SEQRES 23 B 517 ASP ASN LEU ASP ILE ALA ALA GLU TRP THR LEU PHE GLY SEQRES 24 B 517 ILE PHE ALA ASN THR GLY GLN VAL CYS SER ALA THR SER SEQRES 25 B 517 ARG LEU ILE VAL GLN GLU ASN ILE ALA SER ALA PHE MET SEQRES 26 B 517 ASP ARG LEU LEU LYS TRP THR LYS ASN ILE LYS ILE SER SEQRES 27 B 517 ASP PRO LEU GLU GLU ASP CYS LYS LEU GLY PRO VAL VAL SEQRES 28 B 517 SER ALA GLY GLN TYR GLU LYS VAL LEU LYS PHE ILE SER SEQRES 29 B 517 ASN ALA LYS SER GLU GLY ALA THR ILE LEU CYS GLY GLY SEQRES 30 B 517 GLU ARG PRO GLN HIS LEU LYS LYS GLY TYR TYR VAL GLN SEQRES 31 B 517 PRO THR ILE ILE THR ASP VAL ASN THR SER MET GLU ILE SEQRES 32 B 517 TRP LYS GLU GLU VAL PHE GLY PRO VAL LEU CYS VAL LYS SEQRES 33 B 517 THR PHE LYS THR GLU GLU GLN ALA ILE GLU LEU ALA ASN SEQRES 34 B 517 ASP THR LYS TYR GLY LEU GLY ALA ALA VAL MET SER LYS SEQRES 35 B 517 ASP VAL LYS ARG CYS GLU ARG PHE THR LYS ALA PHE GLN SEQRES 36 B 517 THR GLY ILE ILE TRP ILE ASN CYS SER GLN PRO THR PHE SEQRES 37 B 517 ASN GLU LEU PRO TRP GLY GLY LYS LYS ARG SER GLY PHE SEQRES 38 B 517 GLY ARG ASP LEU GLY LYS TRP GLY LEU GLU ASN PHE LEU SEQRES 39 B 517 ASN ILE LYS GLN VAL THR GLU TYR THR SER ALA GLU PRO SEQRES 40 B 517 LEU ALA PHE TYR LYS SER PRO SER LYS ASN HET NAD A 601 27 HET NA A 602 1 HET PEG A 603 7 HET EDO A 604 4 HET 1KA A 605 7 HET NAD B 601 27 HET NA B 602 1 HET PEG B 603 7 HET 1KA B 604 14 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM 1KA (2-HYDROXYETHOXY)ACETALDEHYDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 NA 2(NA 1+) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 EDO C2 H6 O2 FORMUL 7 1KA 2(C4 H8 O3) FORMUL 12 HOH *694(H2 O) HELIX 1 1 THR A 46 ARG A 63 1 18 HELIX 2 2 ARG A 63 SER A 68 1 6 HELIX 3 3 THR A 70 LYS A 88 1 19 HELIX 4 4 LYS A 88 GLY A 101 1 14 HELIX 5 5 THR A 103 ASP A 129 1 27 HELIX 6 6 TYR A 163 ALA A 178 1 16 HELIX 7 7 SER A 191 GLY A 205 1 15 HELIX 8 8 LEU A 217 SER A 227 1 11 HELIX 9 9 SER A 239 GLN A 252 1 14 HELIX 10 10 ASN A 275 ALA A 289 1 15 HELIX 11 11 ASN A 290 GLN A 293 5 4 HELIX 12 12 ILE A 307 ASN A 321 1 15 HELIX 13 13 SER A 339 GLU A 356 1 18 HELIX 14 14 MET A 388 GLU A 393 1 6 HELIX 15 15 THR A 407 ASN A 416 1 10 HELIX 16 16 ASP A 430 PHE A 441 1 12 HELIX 17 17 LYS A 463 ARG A 465 5 3 HELIX 18 18 LEU A 472 ASN A 479 1 8 HELIX 19 19 THR B 46 ARG B 63 1 18 HELIX 20 20 THR B 70 LYS B 88 1 19 HELIX 21 21 LYS B 88 GLY B 101 1 14 HELIX 22 22 THR B 103 ASP B 129 1 27 HELIX 23 23 TYR B 163 ALA B 178 1 16 HELIX 24 24 SER B 191 ILE B 204 1 14 HELIX 25 25 LEU B 217 SER B 227 1 11 HELIX 26 26 SER B 239 GLN B 252 1 14 HELIX 27 27 ASN B 275 ALA B 289 1 15 HELIX 28 28 ASN B 290 GLN B 293 5 4 HELIX 29 29 ILE B 307 ASN B 321 1 15 HELIX 30 30 SER B 339 SER B 355 1 17 HELIX 31 31 MET B 388 GLU B 393 1 6 HELIX 32 32 THR B 407 ASP B 417 1 11 HELIX 33 33 ASP B 430 PHE B 441 1 12 HELIX 34 34 LYS B 463 ARG B 465 5 3 HELIX 35 35 LEU B 472 ASN B 479 1 8 SHEET 1 A 2 LEU A 13 ILE A 15 0 SHEET 2 A 2 GLU A 18 ARG A 20 -1 O ARG A 20 N LEU A 13 SHEET 1 B 2 ARG A 27 ILE A 31 0 SHEET 2 B 2 ILE A 38 PRO A 43 -1 O ILE A 42 N ILE A 28 SHEET 1 C10 MET A 133 VAL A 136 0 SHEET 2 C10 TYR A 143 PRO A 151 -1 O SER A 145 N VAL A 136 SHEET 3 C10 LEU A 481 TYR A 489 -1 O GLU A 488 N LYS A 144 SHEET 4 C10 ILE B 445 ILE B 448 1 O ILE B 446 N GLN A 485 SHEET 5 C10 ALA B 425 MET B 427 1 N VAL B 426 O TRP B 447 SHEET 6 C10 SER B 265 VAL B 269 1 N VAL B 268 O MET B 427 SHEET 7 C10 THR B 298 GLN B 304 1 O ILE B 302 N ILE B 267 SHEET 8 C10 VAL B 399 PHE B 405 1 O CYS B 401 N LEU B 301 SHEET 9 C10 THR B 379 THR B 382 1 N ILE B 381 O LEU B 400 SHEET 10 C10 THR B 359 CYS B 362 -1 N THR B 359 O THR B 382 SHEET 1 D 6 LEU A 211 ILE A 213 0 SHEET 2 D 6 ALA A 181 LYS A 185 1 N LEU A 184 O ASN A 212 SHEET 3 D 6 VAL A 154 ILE A 158 1 N LEU A 157 O LYS A 185 SHEET 4 D 6 LYS A 233 THR A 237 1 O SER A 235 N GLY A 156 SHEET 5 D 6 VAL A 257 GLU A 260 1 O GLU A 260 N PHE A 236 SHEET 6 D 6 GLY A 467 PHE A 468 -1 O PHE A 468 N LEU A 259 SHEET 1 E10 THR A 359 CYS A 362 0 SHEET 2 E10 THR A 379 THR A 382 -1 O THR A 382 N THR A 359 SHEET 3 E10 VAL A 399 PHE A 405 1 O LEU A 400 N ILE A 381 SHEET 4 E10 THR A 298 GLN A 304 1 N LEU A 301 O CYS A 401 SHEET 5 E10 SER A 265 VAL A 269 1 N ILE A 267 O ARG A 300 SHEET 6 E10 ALA A 425 MET A 427 1 O MET A 427 N VAL A 268 SHEET 7 E10 ILE A 445 ILE A 448 1 O TRP A 447 N VAL A 426 SHEET 8 E10 LEU B 481 TYR B 489 1 O GLN B 485 N ILE A 446 SHEET 9 E10 TYR B 143 PRO B 151 -1 N LYS B 144 O GLU B 488 SHEET 10 E10 MET B 133 VAL B 136 -1 N THR B 134 O VAL B 147 SHEET 1 F 2 LEU B 13 ILE B 15 0 SHEET 2 F 2 GLU B 18 ARG B 20 -1 O GLU B 18 N ILE B 15 SHEET 1 G 2 ARG B 27 ILE B 31 0 SHEET 2 G 2 ILE B 38 PRO B 43 -1 O ILE B 42 N ILE B 28 SHEET 1 H 6 LEU B 211 ILE B 213 0 SHEET 2 H 6 ALA B 181 LYS B 185 1 N LEU B 184 O ASN B 212 SHEET 3 H 6 VAL B 154 ILE B 158 1 N LEU B 157 O LYS B 185 SHEET 4 H 6 LYS B 233 THR B 237 1 O SER B 235 N GLY B 156 SHEET 5 H 6 VAL B 257 GLU B 260 1 O GLU B 260 N PHE B 236 SHEET 6 H 6 GLY B 467 PHE B 468 -1 O PHE B 468 N LEU B 259 LINK SG BCYS A 295 C1 1KA A 605 1555 1555 1.86 LINK O ILE A 31 NA NA A 602 1555 1555 2.71 LINK O ASP A 99 NA NA A 602 1555 1555 2.24 LINK OD1 ASP A 99 NA NA A 602 1555 1555 2.60 LINK O LEU A 189 NA NA A 602 1555 1555 2.47 LINK NA NA A 602 O HOH A 778 1555 1555 2.35 LINK NA NA A 602 O HOH A 866 1555 1555 2.55 LINK O ASP B 99 NA NA B 602 1555 1555 2.26 LINK OD1 ASP B 99 NA NA B 602 1555 1555 2.44 LINK O LEU B 189 NA NA B 602 1555 1555 2.42 LINK NA NA B 602 O HOH B 733 1555 1555 2.24 LINK NA NA B 602 O HOH B 857 1555 1555 2.50 CISPEP 1 VAL B 6 PRO B 7 0 -1.92 SITE 1 AC1 17 ILE A 158 THR A 159 TRP A 161 LYS A 185 SITE 2 AC1 17 PRO A 186 SER A 187 GLU A 188 GLY A 218 SITE 3 AC1 17 GLY A 222 GLY A 223 PHE A 236 GLY A 238 SITE 4 AC1 17 SER A 239 THR A 242 ILE A 246 HOH A 753 SITE 5 AC1 17 HOH A 873 SITE 1 AC2 5 ILE A 31 ASP A 99 LEU A 189 HOH A 778 SITE 2 AC2 5 HOH A 866 SITE 1 AC3 6 THR A 382 ASP A 383 VAL A 384 VAL A 402 SITE 2 AC3 6 THR A 404 HOH A 832 SITE 1 AC4 1 TYR B 143 SITE 1 AC5 4 ASN A 162 TYR A 163 CYS A 295 SER A 296 SITE 1 AC6 20 ILE B 158 THR B 159 TRP B 161 LYS B 185 SITE 2 AC6 20 PRO B 186 SER B 187 GLU B 188 GLY B 218 SITE 3 AC6 20 GLY B 222 GLY B 223 PHE B 236 GLY B 238 SITE 4 AC6 20 SER B 239 THR B 242 ILE B 246 HOH B 840 SITE 5 AC6 20 HOH B 970 HOH B 971 HOH B 979 HOH B 994 SITE 1 AC7 5 ILE B 31 ASP B 99 LEU B 189 HOH B 733 SITE 2 AC7 5 HOH B 857 SITE 1 AC8 4 TYR A 143 THR B 454 PHE B 455 HOH B 810 SITE 1 AC9 6 ASN B 162 TYR B 163 CYS B 295 SER B 296 SITE 2 AC9 6 TRP B 460 HOH B 737 CRYST1 84.150 94.790 118.170 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011884 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008462 0.00000