HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 08-DEC-12 4IBK TITLE EBOLA VIRUS VP35 BOUND TO SMALL MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE COFACTOR VP35; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 215-340; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS; SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128952; SOURCE 5 STRAIN: MAYINGA-76; SOURCE 6 GENE: VP35; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS INTERFERON INHIBITOR DOMAIN, TRANSCRIPTION-TRANSCRIPTION INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.S.BROWN,D.W.LEUNG,W.XU,D.M.BOREK,Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS, AUTHOR 2 D.S.PETERSON,J.M.BINNING,G.K.AMARASINGHE REVDAT 5 28-FEB-24 4IBK 1 REMARK SEQADV REVDAT 4 17-JUL-19 4IBK 1 REMARK REVDAT 3 15-NOV-17 4IBK 1 REMARK REVDAT 2 14-MAY-14 4IBK 1 JRNL REVDAT 1 19-MAR-14 4IBK 0 JRNL AUTH C.S.BROWN,M.S.LEE,D.W.LEUNG,T.WANG,W.XU,P.LUTHRA, JRNL AUTH 2 M.ANANTPADMA,R.S.SHABMAN,L.M.MELITO,K.S.MACMILLAN,D.M.BOREK, JRNL AUTH 3 Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS,D.S.PETERSON,J.M.BINNING, JRNL AUTH 4 M.TONELLI,M.A.OLSON,R.A.DAVEY,J.M.READY,C.F.BASLER, JRNL AUTH 5 G.K.AMARASINGHE JRNL TITL IN SILICO DERIVED SMALL MOLECULES BIND THE FILOVIRUS VP35 JRNL TITL 2 PROTEIN AND INHIBIT ITS POLYMERASE COFACTOR ACTIVITY. JRNL REF J.MOL.BIOL. V. 426 2045 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24495995 JRNL DOI 10.1016/J.JMB.2014.01.010 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 21347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9084 - 3.6986 1.00 2721 125 0.1866 0.2165 REMARK 3 2 3.6986 - 2.9359 1.00 2600 138 0.1834 0.2470 REMARK 3 3 2.9359 - 2.5648 0.99 2547 127 0.1989 0.2381 REMARK 3 4 2.5648 - 2.3304 0.99 2487 155 0.1893 0.2576 REMARK 3 5 2.3304 - 2.1633 0.98 2498 146 0.1854 0.2361 REMARK 3 6 2.1633 - 2.0358 0.99 2476 136 0.1872 0.2268 REMARK 3 7 2.0358 - 1.9338 0.98 2489 114 0.2105 0.2709 REMARK 3 8 1.9338 - 1.8497 0.97 2441 147 0.2411 0.2948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2072 REMARK 3 ANGLE : 1.183 2824 REMARK 3 CHIRALITY : 0.061 304 REMARK 3 PLANARITY : 0.005 368 REMARK 3 DIHEDRAL : 16.048 820 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3073 22.3908 -11.9209 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1230 REMARK 3 T33: 0.1753 T12: -0.0167 REMARK 3 T13: -0.0140 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 4.8727 L22: 1.4287 REMARK 3 L33: 1.6900 L12: 1.5488 REMARK 3 L13: -1.0283 L23: 0.2441 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: 0.5072 S13: -0.5019 REMARK 3 S21: -0.1755 S22: 0.0544 S23: 0.0951 REMARK 3 S31: 0.3115 S32: -0.3302 S33: 0.0952 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1406 25.8493 -4.1299 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.0605 REMARK 3 T33: 0.0838 T12: 0.0105 REMARK 3 T13: 0.0098 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.5519 L22: 0.1813 REMARK 3 L33: 2.1558 L12: -0.7375 REMARK 3 L13: -1.1052 L23: 0.1089 REMARK 3 S TENSOR REMARK 3 S11: -0.2586 S12: -0.0602 S13: -0.4672 REMARK 3 S21: 0.0413 S22: 0.1812 S23: 0.0559 REMARK 3 S31: 0.1093 S32: -0.0595 S33: 0.0701 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5776 35.3968 -9.6951 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.0868 REMARK 3 T33: 0.1193 T12: 0.0205 REMARK 3 T13: -0.0080 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.8106 L22: 0.1575 REMARK 3 L33: 2.3883 L12: 0.1733 REMARK 3 L13: -1.1129 L23: -0.1259 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: 0.1397 S13: 0.2108 REMARK 3 S21: 0.0222 S22: 0.0401 S23: 0.0637 REMARK 3 S31: -0.1881 S32: -0.0338 S33: -0.1028 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1708 20.8048 9.0351 REMARK 3 T TENSOR REMARK 3 T11: 0.1946 T22: 0.1229 REMARK 3 T33: 0.1436 T12: 0.0244 REMARK 3 T13: 0.0235 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 3.8098 L22: 0.9616 REMARK 3 L33: 2.0151 L12: -1.4147 REMARK 3 L13: -0.1074 L23: 0.2013 REMARK 3 S TENSOR REMARK 3 S11: -0.2726 S12: -0.6079 S13: -0.5381 REMARK 3 S21: 0.1344 S22: 0.1643 S23: 0.1184 REMARK 3 S31: 0.5532 S32: -0.0704 S33: 0.0333 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0019 30.4714 7.8119 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.0973 REMARK 3 T33: 0.1009 T12: -0.0026 REMARK 3 T13: 0.0048 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.5397 L22: 0.9219 REMARK 3 L33: 3.6292 L12: -0.1426 REMARK 3 L13: -0.5638 L23: -0.1129 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.2771 S13: 0.0967 REMARK 3 S21: 0.0273 S22: 0.0045 S23: 0.1735 REMARK 3 S31: -0.0731 S32: -0.0296 S33: -0.0068 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 217 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6209 22.0014 35.3214 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.0933 REMARK 3 T33: 0.2435 T12: 0.0129 REMARK 3 T13: -0.0244 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: 3.0423 L22: 0.9419 REMARK 3 L33: 2.4739 L12: -0.3176 REMARK 3 L13: -0.6731 L23: 0.4375 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: -0.2177 S13: -0.5880 REMARK 3 S21: 0.0098 S22: 0.0650 S23: -0.2549 REMARK 3 S31: 0.3940 S32: 0.3588 S33: 0.1309 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2500 25.6629 27.2890 REMARK 3 T TENSOR REMARK 3 T11: 0.1069 T22: 0.0429 REMARK 3 T33: 0.0758 T12: -0.0091 REMARK 3 T13: 0.0026 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 4.0407 L22: 0.0978 REMARK 3 L33: 2.5184 L12: 0.4407 REMARK 3 L13: -1.2052 L23: 0.0787 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: 0.0772 S13: -0.3593 REMARK 3 S21: -0.1259 S22: 0.0718 S23: -0.0422 REMARK 3 S31: 0.0721 S32: -0.0346 S33: 0.0956 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 253 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0637 32.7916 37.1894 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.1230 REMARK 3 T33: 0.0793 T12: -0.0040 REMARK 3 T13: -0.0067 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.6011 L22: 0.5915 REMARK 3 L33: 3.8608 L12: -0.6215 REMARK 3 L13: -2.7919 L23: 0.1759 REMARK 3 S TENSOR REMARK 3 S11: -0.0903 S12: -0.4370 S13: 0.1249 REMARK 3 S21: 0.1090 S22: 0.1388 S23: -0.0611 REMARK 3 S31: 0.1776 S32: 0.1539 S33: -0.0586 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 270 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0747 36.5633 33.4558 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.0953 REMARK 3 T33: 0.1343 T12: -0.0059 REMARK 3 T13: 0.0091 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 3.2553 L22: 0.0970 REMARK 3 L33: 3.9819 L12: 0.2167 REMARK 3 L13: -3.5125 L23: -0.3648 REMARK 3 S TENSOR REMARK 3 S11: 0.2701 S12: -0.1630 S13: 0.5802 REMARK 3 S21: 0.0244 S22: 0.0821 S23: -0.0434 REMARK 3 S31: -0.3445 S32: 0.0353 S33: -0.1278 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 284 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1100 37.7163 23.5875 REMARK 3 T TENSOR REMARK 3 T11: 0.1373 T22: 0.1553 REMARK 3 T33: 0.1550 T12: -0.0473 REMARK 3 T13: 0.0011 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 1.9544 L22: 0.8849 REMARK 3 L33: 4.5353 L12: 0.5118 REMARK 3 L13: 0.7107 L23: 0.2781 REMARK 3 S TENSOR REMARK 3 S11: -0.1349 S12: -0.2441 S13: 0.4459 REMARK 3 S21: -0.1600 S22: -0.0945 S23: 0.2516 REMARK 3 S31: -0.4601 S32: 0.5143 S33: -0.0569 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7902 23.8746 13.7889 REMARK 3 T TENSOR REMARK 3 T11: 0.1224 T22: 0.0873 REMARK 3 T33: 0.1232 T12: 0.0246 REMARK 3 T13: 0.0010 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 5.4301 L22: 6.1476 REMARK 3 L33: 1.9608 L12: 4.5580 REMARK 3 L13: 1.7483 L23: 0.2826 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.0921 S13: -0.5074 REMARK 3 S21: -0.2007 S22: -0.0913 S23: 0.0625 REMARK 3 S31: 0.2648 S32: -0.0145 S33: 0.0228 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 298 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6897 21.3020 16.9587 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1375 REMARK 3 T33: 0.1786 T12: -0.0406 REMARK 3 T13: 0.0222 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.6913 L22: 2.4490 REMARK 3 L33: 3.6945 L12: -1.3001 REMARK 3 L13: -0.6748 L23: 1.4294 REMARK 3 S TENSOR REMARK 3 S11: -0.1512 S12: 0.3273 S13: -0.2618 REMARK 3 S21: 0.1778 S22: 0.1888 S23: 0.0432 REMARK 3 S31: 0.5306 S32: -0.2231 S33: 0.1472 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 311 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7847 36.4758 12.9156 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.0939 REMARK 3 T33: 0.1503 T12: -0.0279 REMARK 3 T13: -0.0424 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 0.7129 L22: 0.5422 REMARK 3 L33: 2.3166 L12: 0.1497 REMARK 3 L13: -0.1252 L23: 0.2777 REMARK 3 S TENSOR REMARK 3 S11: -0.0849 S12: 0.0201 S13: 0.3224 REMARK 3 S21: 0.1593 S22: -0.0632 S23: -0.2095 REMARK 3 S31: -0.4763 S32: -0.0005 S33: -0.1385 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9971 30.0738 14.7908 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.0853 REMARK 3 T33: 0.0818 T12: 0.0134 REMARK 3 T13: 0.0098 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.8270 L22: 0.6839 REMARK 3 L33: 4.1973 L12: 0.3806 REMARK 3 L13: -0.2193 L23: 0.1499 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.2082 S13: 0.1260 REMARK 3 S21: 0.0700 S22: 0.0178 S23: -0.0339 REMARK 3 S31: 0.0325 S32: 0.0576 S33: -0.0225 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4IBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791209 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21610 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH5.5, 15% REMARK 280 PEG3350, 10%DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.61100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.41550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.84450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.41550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.61100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.84450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 212 REMARK 465 HIS A 213 REMARK 465 MET A 214 REMARK 465 GLY A 215 REMARK 465 LYS A 216 REMARK 465 PRO A 217 REMARK 465 GLY B 212 REMARK 465 HIS B 213 REMARK 465 MET B 214 REMARK 465 GLY B 215 REMARK 465 LYS B 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 316 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 317 63.62 61.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1DE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1DE B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IBB RELATED DB: PDB REMARK 900 RELATED ID: 4IBC RELATED DB: PDB REMARK 900 RELATED ID: 4IBD RELATED DB: PDB REMARK 900 RELATED ID: 4IBE RELATED DB: PDB REMARK 900 RELATED ID: 4IBF RELATED DB: PDB REMARK 900 RELATED ID: 4IBG RELATED DB: PDB REMARK 900 RELATED ID: 4IBH RELATED DB: PDB REMARK 900 RELATED ID: 4IBI RELATED DB: PDB REMARK 900 RELATED ID: 4IBJ RELATED DB: PDB DBREF 4IBK A 215 340 UNP Q05127 VP35_EBOZM 215 340 DBREF 4IBK B 215 340 UNP Q05127 VP35_EBOZM 215 340 SEQADV 4IBK GLY A 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBK HIS A 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBK MET A 214 UNP Q05127 EXPRESSION TAG SEQADV 4IBK GLY B 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBK HIS B 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBK MET B 214 UNP Q05127 EXPRESSION TAG SEQRES 1 A 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 A 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 A 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 A 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 A 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 A 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 A 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 A 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 A 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 A 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE SEQRES 1 B 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 B 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 B 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 B 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 B 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 B 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 B 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 B 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 B 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 B 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE HET 1DE A 401 34 HET GOL A 402 6 HET DMS A 403 4 HET DMS A 404 4 HET 1DE B 401 34 HETNAM 1DE 3-{(2S)-2-(7-CHLORO-1,3-BENZODIOXOL-5-YL)-3-[(5- HETNAM 2 1DE CHLOROTHIOPHEN-2-YL)CARBONYL]-4-HYDROXY-5-OXO-2,5- HETNAM 3 1DE DIHYDRO-1H-PYRROL-1-YL}BENZOIC ACID HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 1DE 2(C23 H13 CL2 N O7 S) FORMUL 4 GOL C3 H8 O3 FORMUL 5 DMS 2(C2 H6 O S) FORMUL 8 HOH *216(H2 O) HELIX 1 1 SER A 220 ASP A 230 1 11 HELIX 2 2 THR A 237 SER A 253 1 17 HELIX 3 3 SER A 255 GLU A 269 1 15 HELIX 4 4 SER A 272 VAL A 284 1 13 HELIX 5 5 PRO A 285 GLN A 288 5 4 HELIX 6 6 SER A 299 ILE A 303 5 5 HELIX 7 7 PRO A 304 LYS A 309 5 6 HELIX 8 8 LYS A 319 ARG A 322 5 4 HELIX 9 9 SER B 220 ASP B 230 1 11 HELIX 10 10 THR B 237 SER B 253 1 17 HELIX 11 11 SER B 255 GLU B 269 1 15 HELIX 12 12 SER B 272 VAL B 284 1 13 HELIX 13 13 SER B 299 ILE B 303 5 5 HELIX 14 14 PRO B 304 LYS B 309 5 6 HELIX 15 15 LYS B 319 ARG B 322 5 4 SHEET 1 A 4 VAL A 294 ILE A 297 0 SHEET 2 A 4 TRP A 324 LEU A 330 1 O VAL A 327 N ILE A 295 SHEET 3 A 4 THR A 335 LYS A 339 -1 O LEU A 336 N PHE A 328 SHEET 4 A 4 LEU A 311 ARG A 312 -1 N ARG A 312 O GLY A 337 SHEET 1 B 4 VAL B 294 ILE B 297 0 SHEET 2 B 4 TRP B 324 LEU B 330 1 O VAL B 327 N ILE B 295 SHEET 3 B 4 THR B 335 LYS B 339 -1 O LEU B 336 N PHE B 328 SHEET 4 B 4 LEU B 311 ARG B 312 -1 N ARG B 312 O GLY B 337 SITE 1 AC1 10 GLN A 241 GLN A 244 LYS A 248 LYS A 251 SITE 2 AC1 10 PRO A 293 ASP A 302 ARG A 305 DMS A 403 SITE 3 AC1 10 HOH A 557 GLN B 329 SITE 1 AC2 5 VAL A 314 PRO A 315 PRO A 316 THR A 335 SITE 2 AC2 5 HOH A 603 SITE 1 AC3 4 HIS A 296 1DE A 401 HIS B 296 GLN B 329 SITE 1 AC4 4 HIS A 296 GLN A 329 HIS B 296 1DE B 401 SITE 1 AC5 9 GLN A 329 DMS A 404 GLN B 241 GLN B 244 SITE 2 AC5 9 LYS B 248 LYS B 251 PRO B 293 ASP B 302 SITE 3 AC5 9 HOH B 550 CRYST1 51.222 65.689 72.831 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019523 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013730 0.00000