HEADER HYDROLASE 10-DEC-12 4ICK TITLE CRYSTAL STRUCTURE OF HUMAN AP4A HYDROLASE E58A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE [ASYMMETRICAL]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIADENOSINE 5',5'''-P1,P4-TETRAPHOSPHATE ASYMMETRICAL COMPND 5 HYDROLASE, AP4A HYDROLASE, AP4AASE, DIADENOSINE TETRAPHOSPHATASE, COMPND 6 NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 2, NUDIX MOTIF 2; COMPND 7 EC: 3.6.1.17; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT2, APAH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS NUDIX FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.GE,X.CHEN REVDAT 3 08-NOV-23 4ICK 1 REMARK SEQADV REVDAT 2 15-NOV-17 4ICK 1 REMARK REVDAT 1 11-DEC-13 4ICK 0 JRNL AUTH H.GE,X.CHEN,W.YANG,L.NIU,M.TENG JRNL TITL CRYSTAL STRUCTURE OF WILD-TYPE AND MUTANT HUMAN AP4A JRNL TITL 2 HYDROLASE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 432 16 2013 JRNL REFN ISSN 0006-291X JRNL PMID 23384440 JRNL DOI 10.1016/J.BBRC.2013.01.095 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1291 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.649 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2422 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3279 ; 1.589 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 5.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;34.023 ;24.380 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 431 ;15.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.385 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1838 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2254 23.2103 4.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.0903 REMARK 3 T33: 0.1331 T12: -0.0584 REMARK 3 T13: 0.0701 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 1.1879 L22: 3.2030 REMARK 3 L33: 1.3070 L12: -0.0318 REMARK 3 L13: -1.1866 L23: 0.5479 REMARK 3 S TENSOR REMARK 3 S11: -0.2737 S12: 0.1392 S13: -0.2076 REMARK 3 S21: -0.2914 S22: 0.1332 S23: -0.2654 REMARK 3 S31: 0.1231 S32: -0.1138 S33: 0.1405 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8194 34.1555 16.2291 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1291 REMARK 3 T33: 0.0861 T12: 0.0104 REMARK 3 T13: 0.0055 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.2134 L22: 1.3481 REMARK 3 L33: 1.1051 L12: 1.1250 REMARK 3 L13: 0.4848 L23: 0.4029 REMARK 3 S TENSOR REMARK 3 S11: 0.0593 S12: -0.1654 S13: 0.0470 REMARK 3 S21: 0.1396 S22: -0.0780 S23: 0.0979 REMARK 3 S31: -0.2078 S32: -0.2306 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5076 36.0332 9.0659 REMARK 3 T TENSOR REMARK 3 T11: 0.1120 T22: 0.1058 REMARK 3 T33: 0.0965 T12: 0.0215 REMARK 3 T13: 0.0137 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.2342 L22: 1.0502 REMARK 3 L33: 1.3155 L12: 0.4080 REMARK 3 L13: -0.3782 L23: -0.2838 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: -0.0000 S13: -0.0093 REMARK 3 S21: 0.0638 S22: -0.0774 S23: -0.0074 REMARK 3 S31: -0.1702 S32: -0.0353 S33: -0.0216 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5186 29.1268 4.1992 REMARK 3 T TENSOR REMARK 3 T11: 0.0599 T22: 0.0896 REMARK 3 T33: 0.0728 T12: -0.0205 REMARK 3 T13: -0.0005 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.7224 L22: 1.3440 REMARK 3 L33: 1.5328 L12: 0.2340 REMARK 3 L13: -0.9415 L23: -0.2429 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.1548 S13: 0.0299 REMARK 3 S21: -0.1306 S22: -0.0105 S23: 0.0221 REMARK 3 S31: 0.0846 S32: -0.1703 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 23 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9641 46.3375 -5.5534 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.1506 REMARK 3 T33: 0.1303 T12: 0.0162 REMARK 3 T13: 0.0210 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 6.9133 L22: 3.0550 REMARK 3 L33: 0.4538 L12: 0.5287 REMARK 3 L13: 1.5888 L23: 0.4464 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: -0.4908 S13: -0.0467 REMARK 3 S21: -0.0687 S22: 0.0108 S23: -0.2455 REMARK 3 S31: -0.0511 S32: -0.1749 S33: 0.0432 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1203 51.5406 -11.9176 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.1191 REMARK 3 T33: 0.0550 T12: 0.0542 REMARK 3 T13: 0.0130 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 2.3559 L22: 3.2146 REMARK 3 L33: 0.0480 L12: 0.4169 REMARK 3 L13: 0.1729 L23: 0.2978 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: 0.2152 S13: 0.2201 REMARK 3 S21: -0.3919 S22: -0.1600 S23: 0.0209 REMARK 3 S31: -0.0573 S32: -0.0189 S33: 0.0036 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0189 49.4332 -9.9100 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.0645 REMARK 3 T33: 0.0566 T12: -0.0147 REMARK 3 T13: 0.0140 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.0238 L22: 1.2062 REMARK 3 L33: 0.8021 L12: 0.0011 REMARK 3 L13: -0.5207 L23: -0.1213 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: 0.2084 S13: -0.0408 REMARK 3 S21: -0.0926 S22: 0.0518 S23: -0.0316 REMARK 3 S31: -0.0978 S32: -0.0897 S33: 0.0374 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 118 B 148 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1207 46.3280 2.9117 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.1024 REMARK 3 T33: 0.1028 T12: -0.0467 REMARK 3 T13: 0.0032 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.5171 L22: 1.6346 REMARK 3 L33: 0.7174 L12: 0.3945 REMARK 3 L13: 0.1858 L23: -0.9045 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: -0.1989 S13: -0.1506 REMARK 3 S21: 0.2265 S22: -0.0485 S23: 0.1114 REMARK 3 S31: -0.2083 S32: 0.0738 S33: -0.0161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4ICK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00584 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20197 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 13.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR REMARK 200 STARTING MODEL: 3U53 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS (PH 8.4), 2.0M AMMONIUM REMARK 280 PHOSPHATE MONOBASIC, 5MM MAGNESIUM CHLORIDE, TEMPERATURE 285K, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.75500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.09500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.09500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.13250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.09500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.09500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.37750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.09500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.09500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 100.13250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.09500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.09500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.37750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 19 REMARK 465 ASP B 20 REMARK 465 ASN B 21 REMARK 465 GLU B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 89 NZ REMARK 480 GLN A 124 NE2 REMARK 480 ARG B 106 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -161.98 -103.25 REMARK 500 ASN A 86 18.61 59.98 REMARK 500 GLN A 127 -52.96 67.04 REMARK 500 GLN B 127 -58.91 67.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U53 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN AP4A HYDROLASE DBREF 4ICK A 1 147 UNP P50583 AP4A_HUMAN 1 147 DBREF 4ICK B 1 147 UNP P50583 AP4A_HUMAN 1 147 SEQADV 4ICK ALA A 58 UNP P50583 GLU 58 ENGINEERED MUTATION SEQADV 4ICK LEU A 148 UNP P50583 EXPRESSION TAG SEQADV 4ICK GLU A 149 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS A 150 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS A 151 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS A 152 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS A 153 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS A 154 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS A 155 UNP P50583 EXPRESSION TAG SEQADV 4ICK ALA B 58 UNP P50583 GLU 58 ENGINEERED MUTATION SEQADV 4ICK LEU B 148 UNP P50583 EXPRESSION TAG SEQADV 4ICK GLU B 149 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS B 150 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS B 151 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS B 152 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS B 153 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS B 154 UNP P50583 EXPRESSION TAG SEQADV 4ICK HIS B 155 UNP P50583 EXPRESSION TAG SEQRES 1 A 155 MET ALA LEU ARG ALA CYS GLY LEU ILE ILE PHE ARG ARG SEQRES 2 A 155 CYS LEU ILE PRO LYS VAL ASP ASN ASN ALA ILE GLU PHE SEQRES 3 A 155 LEU LEU LEU GLN ALA SER ASP GLY ILE HIS HIS TRP THR SEQRES 4 A 155 PRO PRO LYS GLY HIS VAL GLU PRO GLY GLU ASP ASP LEU SEQRES 5 A 155 GLU THR ALA LEU ARG ALA THR GLN GLU GLU ALA GLY ILE SEQRES 6 A 155 GLU ALA GLY GLN LEU THR ILE ILE GLU GLY PHE LYS ARG SEQRES 7 A 155 GLU LEU ASN TYR VAL ALA ARG ASN LYS PRO LYS THR VAL SEQRES 8 A 155 ILE TYR TRP LEU ALA GLU VAL LYS ASP TYR ASP VAL GLU SEQRES 9 A 155 ILE ARG LEU SER HIS GLU HIS GLN ALA TYR ARG TRP LEU SEQRES 10 A 155 GLY LEU GLU GLU ALA CYS GLN LEU ALA GLN PHE LYS GLU SEQRES 11 A 155 MET LYS ALA ALA LEU GLN GLU GLY HIS GLN PHE LEU CYS SEQRES 12 A 155 SER ILE GLU ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 155 MET ALA LEU ARG ALA CYS GLY LEU ILE ILE PHE ARG ARG SEQRES 2 B 155 CYS LEU ILE PRO LYS VAL ASP ASN ASN ALA ILE GLU PHE SEQRES 3 B 155 LEU LEU LEU GLN ALA SER ASP GLY ILE HIS HIS TRP THR SEQRES 4 B 155 PRO PRO LYS GLY HIS VAL GLU PRO GLY GLU ASP ASP LEU SEQRES 5 B 155 GLU THR ALA LEU ARG ALA THR GLN GLU GLU ALA GLY ILE SEQRES 6 B 155 GLU ALA GLY GLN LEU THR ILE ILE GLU GLY PHE LYS ARG SEQRES 7 B 155 GLU LEU ASN TYR VAL ALA ARG ASN LYS PRO LYS THR VAL SEQRES 8 B 155 ILE TYR TRP LEU ALA GLU VAL LYS ASP TYR ASP VAL GLU SEQRES 9 B 155 ILE ARG LEU SER HIS GLU HIS GLN ALA TYR ARG TRP LEU SEQRES 10 B 155 GLY LEU GLU GLU ALA CYS GLN LEU ALA GLN PHE LYS GLU SEQRES 11 B 155 MET LYS ALA ALA LEU GLN GLU GLY HIS GLN PHE LEU CYS SEQRES 12 B 155 SER ILE GLU ALA LEU GLU HIS HIS HIS HIS HIS HIS HET GOL A 201 6 HET PO4 B 201 5 HET MG B 202 1 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 PO4 O4 P 3- FORMUL 5 MG MG 2+ FORMUL 6 HOH *185(H2 O) HELIX 1 1 ASP A 50 GLY A 64 1 15 HELIX 2 2 GLU A 66 GLY A 68 5 3 HELIX 3 3 GLY A 118 GLN A 127 1 10 HELIX 4 4 PHE A 128 HIS A 150 1 23 HELIX 5 5 ASP B 50 GLY B 64 1 15 HELIX 6 6 GLU B 66 GLY B 68 5 3 HELIX 7 7 GLY B 118 GLN B 127 1 10 HELIX 8 8 PHE B 128 LEU B 148 1 21 SHEET 1 A 5 TRP A 38 THR A 39 0 SHEET 2 A 5 ILE A 24 ALA A 31 -1 N LEU A 29 O THR A 39 SHEET 3 A 5 ALA A 5 ARG A 13 -1 N ARG A 12 O GLU A 25 SHEET 4 A 5 LYS A 87 VAL A 98 1 O TRP A 94 N ILE A 9 SHEET 5 A 5 LEU A 70 ALA A 84 -1 N LEU A 80 O VAL A 91 SHEET 1 B 4 LYS A 42 HIS A 44 0 SHEET 2 B 4 ALA A 5 ARG A 13 -1 N CYS A 6 O GLY A 43 SHEET 3 B 4 ILE A 24 ALA A 31 -1 O GLU A 25 N ARG A 12 SHEET 4 B 4 HIS A 111 LEU A 117 -1 O LEU A 117 N PHE A 26 SHEET 1 C 5 TRP B 38 THR B 39 0 SHEET 2 C 5 ILE B 24 ALA B 31 -1 N LEU B 29 O THR B 39 SHEET 3 C 5 ARG B 4 ARG B 13 -1 N ARG B 12 O GLU B 25 SHEET 4 C 5 PRO B 88 VAL B 98 1 O TRP B 94 N ILE B 9 SHEET 5 C 5 LEU B 70 VAL B 83 -1 N LEU B 80 O VAL B 91 SHEET 1 D 4 LYS B 42 HIS B 44 0 SHEET 2 D 4 ARG B 4 ARG B 13 -1 N CYS B 6 O GLY B 43 SHEET 3 D 4 ILE B 24 ALA B 31 -1 O GLU B 25 N ARG B 12 SHEET 4 D 4 HIS B 111 LEU B 117 -1 O LEU B 117 N PHE B 26 SITE 1 AC1 6 ASN A 22 ALA A 23 ILE A 24 GLU A 46 SITE 2 AC1 6 HIS A 139 HOH A 314 SITE 1 AC2 9 ARG A 12 TRP A 116 HOH A 318 TYR B 114 SITE 2 AC2 9 TRP B 116 HOH B 301 HOH B 303 HOH B 304 SITE 3 AC2 9 HOH B 305 SITE 1 AC3 5 ASP A 50 GLU A 53 GLN A 140 LYS B 77 SITE 2 AC3 5 TRP B 94 CRYST1 72.190 72.190 133.510 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007490 0.00000