HEADER OXIDOREDUCTASE 11-DEC-12 4ICY TITLE TRACING THE EVOLUTION OF ANGUCYCLINONE MONOOXYGENASES: STRUCTURAL TITLE 2 DETERMINANTS FOR C-12B HYDROXYLATION AND SUBSTRATE INHIBITION IN PGAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE OXYGENASE PGAE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. PGA64; SOURCE 3 ORGANISM_TAXID: 161235; SOURCE 4 STRAIN: PGA64; SOURCE 5 GENE: PGAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PBAD KEYWDS FAD-DEPENDENT AROMATIC HYDROXYLATION, MONOOXYGENASE, FAD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KALLIO,P.PATRIKAINEN,G.BELOGUROV,P.MANTSALA,K.YANG,J.NIEMI,M.METSA- AUTHOR 2 KETELA REVDAT 4 03-APR-24 4ICY 1 REMARK REVDAT 3 28-FEB-24 4ICY 1 REMARK SEQADV REVDAT 2 10-JUL-13 4ICY 1 JRNL REVDAT 1 12-JUN-13 4ICY 0 JRNL AUTH P.KALLIO,P.PATRIKAINEN,G.A.BELOGUROV,P.MANTSALA,K.YANG, JRNL AUTH 2 J.NIEMI,M.METSA-KETELA JRNL TITL TRACING THE EVOLUTION OF ANGUCYCLINONE MONOOXYGENASES: JRNL TITL 2 STRUCTURAL DETERMINANTS FOR C-12B HYDROXYLATION AND JRNL TITL 3 SUBSTRATE INHIBITION IN PGAE. JRNL REF BIOCHEMISTRY V. 52 4507 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23731237 JRNL DOI 10.1021/BI400381S REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 22469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5 % REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : -3.63000 REMARK 3 B33 (A**2) : 2.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.332 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.922 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3609 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4901 ; 1.341 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 5.584 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;33.788 ;22.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;15.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2747 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 491 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8310 25.3657 26.5758 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0154 REMARK 3 T33: 0.0515 T12: 0.0054 REMARK 3 T13: 0.0169 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.1274 L22: 0.8022 REMARK 3 L33: 0.3229 L12: -0.1640 REMARK 3 L13: 0.1368 L23: 0.1423 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.0210 S13: 0.0286 REMARK 3 S21: -0.1136 S22: -0.0195 S23: -0.1258 REMARK 3 S31: -0.0154 S32: -0.0491 S33: -0.0061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4ICY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23686 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NATIVE PGAE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULPHATE, 0.1M MES REMARK 280 -BUFFER, 2% V/V 1,4-DIOXANE, PH 6.4, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.52000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 106.44000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.52000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.44000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.52000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.44000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.52000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 106.44000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 32.98500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 106.44000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 32.98500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 106.44000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 32.98500 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 106.44000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 32.98500 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 106.44000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 32.98500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.52000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 32.98500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 85.52000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 32.98500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 85.52000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 32.98500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 85.52000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 65.97000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 654 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ARG A 0 REMARK 465 LEU A 185 REMARK 465 GLN A 186 REMARK 465 PRO A 187 REMARK 465 ARG A 188 REMARK 465 MET A 189 REMARK 465 ILE A 190 REMARK 465 GLY A 191 REMARK 465 GLU A 192 REMARK 465 THR A 193 REMARK 465 LEU A 194 REMARK 465 PRO A 195 REMARK 465 GLY A 196 REMARK 465 GLY A 197 REMARK 465 MET A 198 REMARK 465 VAL A 199 REMARK 465 MET A 200 REMARK 465 VAL A 201 REMARK 465 GLY A 202 REMARK 465 PRO A 203 REMARK 465 LEU A 204 REMARK 465 PRO A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 221 REMARK 465 ARG A 222 REMARK 465 ARG A 223 REMARK 465 GLU A 224 REMARK 465 THR A 225 REMARK 465 PRO A 226 REMARK 465 PRO A 227 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 41 CB OG REMARK 480 VAL A 183 CB CG1 CG2 REMARK 480 ILE A 208 CB CG1 CG2 CD1 REMARK 480 ILE A 211 CB CG1 CG2 CD1 REMARK 480 ILE A 212 CB CG1 CG2 CD1 REMARK 480 VAL A 232 CB CG1 CG2 REMARK 480 ALA A 233 CB REMARK 480 ALA A 235 CB REMARK 480 ILE A 244 CB CG1 CG2 CD1 REMARK 480 ALA A 247 CB REMARK 480 GLU A 248 CB CG CD OE1 OE2 REMARK 480 VAL A 250 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 88 CE2 TRP A 88 CD2 0.072 REMARK 500 ILE A 211 CA ILE A 211 CB -0.408 REMARK 500 ILE A 212 CA ILE A 212 CB -0.265 REMARK 500 ALA A 247 CA ALA A 247 CB -0.178 REMARK 500 GLU A 248 CA GLU A 248 CB -0.139 REMARK 500 VAL A 250 CA VAL A 250 CB -0.317 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 211 CB - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 ILE A 212 N - CA - CB ANGL. DEV. = 18.0 DEGREES REMARK 500 ALA A 247 N - CA - CB ANGL. DEV. = 16.1 DEGREES REMARK 500 VAL A 250 N - CA - CB ANGL. DEV. = 16.9 DEGREES REMARK 500 VAL A 250 CA - CB - CG1 ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 155 32.65 -98.82 REMARK 500 SER A 156 120.97 -32.09 REMARK 500 ILE A 244 30.36 -143.31 REMARK 500 VAL A 250 -72.32 -68.73 REMARK 500 ASP A 421 49.99 33.26 REMARK 500 TRP A 468 145.08 -170.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QA1 RELATED DB: PDB REMARK 900 STRUCTURE OF NATIVE PGAE DBREF 4ICY A 2 491 UNP Q93LY7 Q93LY7_9ACTO 2 491 SEQADV 4ICY ALA A -8 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY HIS A -7 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY HIS A -6 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY HIS A -5 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY HIS A -4 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY HIS A -3 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY HIS A -2 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY HIS A -1 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY ARG A 0 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY SER A 1 UNP Q93LY7 EXPRESSION TAG SEQADV 4ICY GLN A 78 UNP Q93LY7 PRO 78 ENGINEERED MUTATION SEQADV 4ICY PHE A 79 UNP Q93LY7 ILE 79 ENGINEERED MUTATION SEQRES 1 A 500 ALA HIS HIS HIS HIS HIS HIS HIS ARG SER ASP ALA ALA SEQRES 2 A 500 VAL ILE VAL VAL GLY ALA GLY PRO ALA GLY MET MET LEU SEQRES 3 A 500 ALA GLY GLU LEU ARG LEU ALA GLY VAL GLU VAL VAL VAL SEQRES 4 A 500 LEU GLU ARG LEU VAL GLU ARG THR GLY GLU SER ARG GLY SEQRES 5 A 500 LEU GLY PHE THR ALA ARG THR MET GLU VAL PHE ASP GLN SEQRES 6 A 500 ARG GLY ILE LEU PRO ARG PHE GLY GLU VAL GLU THR SER SEQRES 7 A 500 THR GLN GLY HIS PHE GLY GLY LEU GLN PHE ASP PHE GLY SEQRES 8 A 500 VAL LEU GLU GLY ALA TRP GLN ALA ALA LYS THR VAL PRO SEQRES 9 A 500 GLN SER VAL THR GLU THR HIS LEU GLU GLN TRP ALA THR SEQRES 10 A 500 GLY LEU GLY ALA ASP ILE ARG ARG GLY HIS GLU VAL LEU SEQRES 11 A 500 SER LEU THR ASP ASP GLY ALA GLY VAL THR VAL GLU VAL SEQRES 12 A 500 ARG GLY PRO GLU GLY LYS HIS THR LEU ARG ALA ALA TYR SEQRES 13 A 500 LEU VAL GLY CYS ASP GLY GLY ARG SER SER VAL ARG LYS SEQRES 14 A 500 ALA ALA GLY PHE ASP PHE PRO GLY THR ALA ALA THR MET SEQRES 15 A 500 GLU MET TYR LEU ALA ASP ILE LYS GLY VAL GLU LEU GLN SEQRES 16 A 500 PRO ARG MET ILE GLY GLU THR LEU PRO GLY GLY MET VAL SEQRES 17 A 500 MET VAL GLY PRO LEU PRO GLY GLY ILE THR ARG ILE ILE SEQRES 18 A 500 VAL CYS GLU ARG GLY THR PRO PRO GLN ARG ARG GLU THR SEQRES 19 A 500 PRO PRO SER TRP HIS GLU VAL ALA ASP ALA TRP LYS ARG SEQRES 20 A 500 LEU THR GLY ASP ASP ILE ALA HIS ALA GLU PRO VAL TRP SEQRES 21 A 500 VAL SER ALA PHE GLY ASN ALA THR ARG GLN VAL THR GLU SEQRES 22 A 500 TYR ARG ARG GLY ARG VAL ILE LEU ALA GLY ASP SER ALA SEQRES 23 A 500 HIS ILE HIS LEU PRO ALA GLY GLY GLN GLY MET ASN THR SEQRES 24 A 500 SER ILE GLN ASP ALA VAL ASN LEU GLY TRP LYS LEU GLY SEQRES 25 A 500 ALA VAL VAL ASN GLY THR ALA THR GLU GLU LEU LEU ASP SEQRES 26 A 500 SER TYR HIS SER GLU ARG HIS ALA VAL GLY LYS ARG LEU SEQRES 27 A 500 LEU MET ASN THR GLN ALA GLN GLY LEU LEU PHE LEU SER SEQRES 28 A 500 GLY PRO GLU VAL GLN PRO LEU ARG ASP VAL LEU THR GLU SEQRES 29 A 500 LEU ILE GLN TYR GLY GLU VAL ALA ARG HIS LEU ALA GLY SEQRES 30 A 500 MET VAL SER GLY LEU GLU ILE THR TYR ASP VAL GLY THR SEQRES 31 A 500 GLY SER HIS PRO LEU LEU GLY LYS ARG MET PRO ALA LEU SEQRES 32 A 500 GLU LEU THR THR ALA THR ARG GLU THR SER SER THR GLU SEQRES 33 A 500 LEU LEU HIS THR ALA ARG GLY VAL LEU LEU ASP LEU ALA SEQRES 34 A 500 ASP ASN PRO ARG LEU ARG ALA ARG ALA ALA ALA TRP SER SEQRES 35 A 500 ASP ARG VAL ASP ILE VAL THR ALA VAL PRO GLY GLU VAL SEQRES 36 A 500 SER ALA THR SER GLY LEU ARG ASP THR THR ALA VAL LEU SEQRES 37 A 500 ILE ARG PRO ASP GLY HIS VAL ALA TRP ALA ALA PRO GLY SEQRES 38 A 500 SER HIS HIS ASP LEU PRO MET ALA LEU GLU ARG TRP PHE SEQRES 39 A 500 GLY ALA PRO LEU THR GLY HET FAD A 501 53 HET EDO A 502 4 HET EDO A 503 4 HET GOL A 504 6 HET GOL A 505 6 HET EDO A 506 4 HET SO4 A 507 5 HET SO4 A 508 5 HET EDO A 509 4 HET CL A 510 1 HET CL A 511 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 EDO 4(C2 H6 O2) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 8 SO4 2(O4 S 2-) FORMUL 11 CL 2(CL 1-) FORMUL 13 HOH *113(H2 O) HELIX 1 1 GLY A 11 ALA A 24 1 14 HELIX 2 2 THR A 47 GLN A 56 1 10 HELIX 3 3 ARG A 57 GLY A 58 5 2 HELIX 4 4 ILE A 59 GLY A 64 5 6 HELIX 5 5 GLY A 82 LEU A 84 5 3 HELIX 6 6 GLY A 86 ALA A 90 5 5 HELIX 7 7 GLN A 96 LEU A 110 1 15 HELIX 8 8 SER A 156 ALA A 162 1 7 HELIX 9 9 TRP A 229 GLY A 241 1 13 HELIX 10 10 GLN A 286 ASN A 307 1 22 HELIX 11 11 THR A 311 SER A 342 1 32 HELIX 12 12 GLY A 343 GLU A 345 5 3 HELIX 13 13 VAL A 346 GLN A 358 1 13 HELIX 14 14 TYR A 359 GLY A 372 1 14 HELIX 15 15 SER A 405 LEU A 409 1 5 HELIX 16 16 ASN A 422 ALA A 430 1 9 HELIX 17 17 ALA A 431 SER A 433 5 3 HELIX 18 18 ASP A 476 GLY A 486 1 11 SHEET 1 A 6 ASP A 113 ARG A 116 0 SHEET 2 A 6 VAL A 28 GLU A 32 1 N VAL A 30 O ARG A 115 SHEET 3 A 6 ASP A 2 VAL A 8 1 N VAL A 7 O LEU A 31 SHEET 4 A 6 GLY A 139 GLY A 150 1 O VAL A 149 N VAL A 8 SHEET 5 A 6 VAL A 130 GLY A 136 -1 N VAL A 134 O HIS A 141 SHEET 6 A 6 GLU A 119 ASP A 125 -1 N LEU A 121 O GLU A 133 SHEET 1 B 6 ASP A 113 ARG A 116 0 SHEET 2 B 6 VAL A 28 GLU A 32 1 N VAL A 30 O ARG A 115 SHEET 3 B 6 ASP A 2 VAL A 8 1 N VAL A 7 O LEU A 31 SHEET 4 B 6 GLY A 139 GLY A 150 1 O VAL A 149 N VAL A 8 SHEET 5 B 6 VAL A 270 LEU A 272 1 O ILE A 271 N GLY A 150 SHEET 6 B 6 ARG A 266 ARG A 267 -1 N ARG A 267 O VAL A 270 SHEET 1 C 2 LEU A 44 PHE A 46 0 SHEET 2 C 2 ALA A 91 PRO A 95 -1 O VAL A 94 N GLY A 45 SHEET 1 D 2 GLN A 71 PHE A 74 0 SHEET 2 D 2 LEU A 77 ASP A 80 -1 O PHE A 79 N GLY A 72 SHEET 1 E 3 GLY A 168 THR A 169 0 SHEET 2 E 3 THR A 259 GLN A 261 -1 O THR A 259 N THR A 169 SHEET 3 E 3 HIS A 278 ILE A 279 -1 O ILE A 279 N ARG A 260 SHEET 1 F 3 THR A 209 VAL A 213 0 SHEET 2 F 3 MET A 175 LYS A 181 -1 N ILE A 180 O THR A 209 SHEET 3 F 3 GLU A 248 PHE A 255 -1 O VAL A 250 N ASP A 179 SHEET 1 G 3 GLU A 402 SER A 404 0 SHEET 2 G 3 GLU A 395 THR A 397 -1 N LEU A 396 O THR A 403 SHEET 3 G 3 VAL A 442 PRO A 443 -1 O VAL A 442 N THR A 397 SHEET 1 H 4 VAL A 436 THR A 440 0 SHEET 2 H 4 GLY A 414 ASP A 418 1 N ASP A 418 O VAL A 439 SHEET 3 H 4 ALA A 457 ILE A 460 -1 O VAL A 458 N LEU A 417 SHEET 4 H 4 VAL A 466 ALA A 470 -1 O TRP A 468 N LEU A 459 CISPEP 1 ALA A 470 PRO A 471 0 -1.30 SITE 1 AC1 32 VAL A 8 GLY A 9 GLY A 11 PRO A 12 SITE 2 AC1 32 ALA A 13 LEU A 31 GLU A 32 ARG A 33 SITE 3 AC1 32 LEU A 34 ARG A 42 GLY A 43 GLN A 96 SITE 4 AC1 32 HIS A 118 GLU A 119 VAL A 120 CYS A 151 SITE 5 AC1 32 ASP A 152 GLY A 153 SER A 157 GLY A 274 SITE 6 AC1 32 ASP A 275 GLY A 285 GLN A 286 GLY A 287 SITE 7 AC1 32 MET A 288 ASN A 289 SER A 291 CL A 511 SITE 8 AC1 32 HOH A 643 HOH A 662 HOH A 674 HOH A 683 SITE 1 AC2 4 HIS A 73 GLY A 284 GLY A 285 PHE A 340 SITE 1 AC3 4 THR A 398 THR A 400 ARG A 401 HOH A 649 SITE 1 AC4 1 ARG A 267 SITE 1 AC5 4 LEU A 23 ALA A 24 ASN A 307 ARG A 413 SITE 1 AC6 1 THR A 376 SITE 1 AC7 6 ARG A 428 TRP A 468 HIS A 475 ASP A 476 SITE 2 AC7 6 LEU A 477 HOH A 654 SITE 1 AC8 3 GLY A 360 GLU A 361 ARG A 364 SITE 1 AC9 3 TRP A 300 ARG A 435 HOH A 661 SITE 1 BC1 2 ARG A 401 GLU A 402 SITE 1 BC2 5 HIS A 280 PRO A 282 GLN A 286 GLY A 287 SITE 2 BC2 5 FAD A 501 CRYST1 65.970 171.040 212.880 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015158 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004697 0.00000