HEADER OXIDOREDUCTASE 12-DEC-12 4IDG TITLE CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE/REDUCTASE SUPERFAMILY TITLE 2 PROTEIN FROM AGROBACTERIUM TUMEFACIENS (TARGET EFI-506441) WITH BOUND TITLE 3 NAD, MONOCLINIC FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: STR. C58; SOURCE 5 GENE: GALE, ATU5463; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,F.GRONINGER-POE,L.L.MORISCO,S.R.WASSERMAN,S.SOJITRA, AUTHOR 2 H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 20-SEP-23 4IDG 1 REMARK SEQADV REVDAT 1 26-DEC-12 4IDG 0 JRNL AUTH M.W.VETTING,F.GRONINGER-POE,L.L.MORISCO,S.R.WASSERMAN, JRNL AUTH 2 S.SOJITRA,H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 3 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE/REDUCTASE JRNL TITL 2 SUPERFAMILY PROTEIN FROM AGROBACTERIUM TUMEFACIENS (TARGET JRNL TITL 3 EFI-506441) WITH BOUND NAD, MONOCLINIC FORM 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 61676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7521 - 5.3184 0.90 2559 137 0.1798 0.2286 REMARK 3 2 5.3184 - 4.2235 0.96 2655 162 0.1427 0.1612 REMARK 3 3 4.2235 - 3.6903 0.94 2587 134 0.1525 0.1891 REMARK 3 4 3.6903 - 3.3531 0.95 2609 127 0.1650 0.1774 REMARK 3 5 3.3531 - 3.1129 0.97 2651 140 0.1631 0.2020 REMARK 3 6 3.1129 - 2.9295 0.98 2662 149 0.1915 0.2166 REMARK 3 7 2.9295 - 2.7828 0.98 2689 130 0.1832 0.2358 REMARK 3 8 2.7828 - 2.6618 0.99 2711 131 0.1772 0.2219 REMARK 3 9 2.6618 - 2.5593 0.99 2715 152 0.1810 0.2308 REMARK 3 10 2.5593 - 2.4710 0.99 2690 131 0.1694 0.2560 REMARK 3 11 2.4710 - 2.3938 0.99 2704 135 0.1778 0.2274 REMARK 3 12 2.3938 - 2.3254 0.99 2720 124 0.1792 0.2217 REMARK 3 13 2.3254 - 2.2642 0.99 2691 147 0.1788 0.2210 REMARK 3 14 2.2642 - 2.2089 0.99 2683 135 0.1718 0.2220 REMARK 3 15 2.2089 - 2.1587 0.99 2698 156 0.1807 0.2275 REMARK 3 16 2.1587 - 2.1128 0.99 2661 149 0.1954 0.2477 REMARK 3 17 2.1128 - 2.0705 0.99 2675 143 0.2078 0.2376 REMARK 3 18 2.0705 - 2.0315 0.98 2647 162 0.2142 0.2862 REMARK 3 19 2.0315 - 1.9952 0.98 2621 145 0.2358 0.2982 REMARK 3 20 1.9952 - 1.9614 0.97 2685 146 0.2517 0.3263 REMARK 3 21 1.9614 - 1.9297 0.97 2577 152 0.2686 0.3053 REMARK 3 22 1.9297 - 1.9000 0.97 2659 140 0.2822 0.2993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5334 REMARK 3 ANGLE : 1.048 7240 REMARK 3 CHIRALITY : 0.071 788 REMARK 3 PLANARITY : 0.005 968 REMARK 3 DIHEDRAL : 14.296 1978 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1053 15.1401 37.9049 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1005 REMARK 3 T33: 0.2240 T12: 0.0274 REMARK 3 T13: -0.0276 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.0988 L22: 1.0246 REMARK 3 L33: 1.4937 L12: -0.0913 REMARK 3 L13: 0.2724 L23: 0.1532 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: -0.0672 S13: 0.3800 REMARK 3 S21: 0.0270 S22: -0.0518 S23: 0.3462 REMARK 3 S31: -0.2447 S32: -0.1972 S33: 0.0545 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6749 -0.7219 31.2249 REMARK 3 T TENSOR REMARK 3 T11: 0.0650 T22: 0.0677 REMARK 3 T33: 0.0793 T12: -0.0026 REMARK 3 T13: -0.0270 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.5483 L22: 1.0187 REMARK 3 L33: 0.9403 L12: -0.0219 REMARK 3 L13: 0.1876 L23: -0.1114 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0045 S13: 0.0016 REMARK 3 S21: -0.1357 S22: -0.0124 S23: 0.0875 REMARK 3 S31: 0.0406 S32: 0.0213 S33: 0.0141 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5198 -4.7384 52.4888 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: 0.1707 REMARK 3 T33: 0.0903 T12: -0.0704 REMARK 3 T13: 0.0613 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.4444 L22: 0.5416 REMARK 3 L33: 0.8105 L12: 0.0613 REMARK 3 L13: -0.0959 L23: -0.0922 REMARK 3 S TENSOR REMARK 3 S11: 0.1229 S12: -0.1343 S13: 0.0100 REMARK 3 S21: 0.5011 S22: -0.1111 S23: 0.0762 REMARK 3 S31: 0.0995 S32: -0.1497 S33: 0.0333 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6626 -8.9591 11.8996 REMARK 3 T TENSOR REMARK 3 T11: 0.0699 T22: 0.0637 REMARK 3 T33: 0.0878 T12: -0.0266 REMARK 3 T13: -0.0475 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5877 L22: 0.8790 REMARK 3 L33: 1.0458 L12: -0.0829 REMARK 3 L13: 0.2049 L23: 0.3259 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.0425 S13: 0.0597 REMARK 3 S21: -0.1954 S22: -0.0077 S23: 0.0789 REMARK 3 S31: -0.0237 S32: 0.0263 S33: -0.0073 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 150 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2517 -6.6249 -1.3274 REMARK 3 T TENSOR REMARK 3 T11: 0.3587 T22: 0.2210 REMARK 3 T33: 0.0569 T12: -0.1059 REMARK 3 T13: 0.2613 T23: -0.1334 REMARK 3 L TENSOR REMARK 3 L11: 0.6275 L22: 0.3021 REMARK 3 L33: 0.6634 L12: 0.0270 REMARK 3 L13: -0.0629 L23: 0.1717 REMARK 3 S TENSOR REMARK 3 S11: 0.2674 S12: 0.1241 S13: -0.1432 REMARK 3 S21: -0.2539 S22: 0.2251 S23: -0.2254 REMARK 3 S31: -0.3600 S32: 0.4008 S33: 0.2962 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61811 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 90.391 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : 0.58200 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 4ID9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10MM TRIS PH 7.9, 5 MM NAD, 5 REMARK 280 MM UDP-GAL; RESERVOIR (0.1 M BIS-TRIS:HCL PH 6.5 20% (W/V) PEG REMARK 280 MME 5000); CRYOPROTECTION (RESERVOIR + 20% ETHYLENE GLYCOL, 5 MM REMARK 280 NAD, 5 MM UDP-GAL), SITTING DROP VAPOR DIFFUSION, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.85150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 83 -62.09 -99.54 REMARK 500 SER A 105 -162.15 -102.28 REMARK 500 ARG A 114 71.71 -155.70 REMARK 500 TYR A 286 100.56 -163.95 REMARK 500 VAL B 83 -61.80 -95.87 REMARK 500 SER B 105 -157.87 -103.26 REMARK 500 ARG B 114 73.13 -155.94 REMARK 500 SER B 149 -81.25 -90.27 REMARK 500 TYR B 286 100.02 -160.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-506441 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4ID9 RELATED DB: PDB DBREF 4IDG A 1 327 UNP A9CL58 A9CL58_AGRT5 1 327 DBREF 4IDG B 1 327 UNP A9CL58 A9CL58_AGRT5 1 327 SEQADV 4IDG MET A -19 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG GLY A -18 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER A -17 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER A -16 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS A -15 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS A -14 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS A -13 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS A -12 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS A -11 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS A -10 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER A -9 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER A -8 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG GLY A -7 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG LEU A -6 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG VAL A -5 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG PRO A -4 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG ARG A -3 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG GLY A -2 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER A -1 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS A 0 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG MET B -19 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG GLY B -18 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER B -17 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER B -16 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS B -15 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS B -14 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS B -13 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS B -12 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS B -11 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS B -10 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER B -9 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER B -8 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG GLY B -7 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG LEU B -6 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG VAL B -5 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG PRO B -4 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG ARG B -3 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG GLY B -2 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG SER B -1 UNP A9CL58 EXPRESSION TAG SEQADV 4IDG HIS B 0 UNP A9CL58 EXPRESSION TAG SEQRES 1 A 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 347 LEU VAL PRO ARG GLY SER HIS MET ILE LEU VAL THR GLY SEQRES 3 A 347 SER ALA GLY ARG VAL GLY ARG ALA VAL VAL ALA ALA LEU SEQRES 4 A 347 ARG THR GLN GLY ARG THR VAL ARG GLY PHE ASP LEU ARG SEQRES 5 A 347 PRO SER GLY THR GLY GLY GLU GLU VAL VAL GLY SER LEU SEQRES 6 A 347 GLU ASP GLY GLN ALA LEU SER ASP ALA ILE MET GLY VAL SEQRES 7 A 347 SER ALA VAL LEU HIS LEU GLY ALA PHE MET SER TRP ALA SEQRES 8 A 347 PRO ALA ASP ARG ASP ARG MET PHE ALA VAL ASN VAL GLU SEQRES 9 A 347 GLY THR ARG ARG LEU LEU ASP ALA ALA SER ALA ALA GLY SEQRES 10 A 347 VAL ARG ARG PHE VAL PHE ALA SER SER GLY GLU VAL TYR SEQRES 11 A 347 PRO GLU ASN ARG PRO GLU PHE LEU PRO VAL THR GLU ASP SEQRES 12 A 347 HIS PRO LEU CYS PRO ASN SER PRO TYR GLY LEU THR LYS SEQRES 13 A 347 LEU LEU GLY GLU GLU LEU VAL ARG PHE HIS GLN ARG SER SEQRES 14 A 347 GLY ALA MET GLU THR VAL ILE LEU ARG PHE SER HIS THR SEQRES 15 A 347 GLN ASP ALA THR GLU LEU LEU ASP GLU ASP SER PHE PHE SEQRES 16 A 347 SER GLY PRO ARG PHE PHE LEU ARG PRO ARG ILE HIS GLN SEQRES 17 A 347 GLN GLN ASN PHE GLY ASN ALA ALA ILE ALA GLU LEU LEU SEQRES 18 A 347 GLN SER ARG ASP ILE GLY GLU PRO SER HIS ILE LEU ALA SEQRES 19 A 347 ARG ASN GLU ASN GLY ARG PRO PHE ARG MET HIS ILE THR SEQRES 20 A 347 ASP THR ARG ASP MET VAL ALA GLY ILE LEU LEU ALA LEU SEQRES 21 A 347 ASP HIS PRO GLU ALA ALA GLY GLY THR PHE ASN LEU GLY SEQRES 22 A 347 ALA ASP GLU PRO ALA ASP PHE ALA ALA LEU LEU PRO LYS SEQRES 23 A 347 ILE ALA ALA LEU THR GLY LEU PRO ILE VAL THR VAL ASP SEQRES 24 A 347 PHE PRO GLY ASP GLY VAL TYR TYR HIS THR SER ASN GLU SEQRES 25 A 347 ARG ILE ARG ASN THR LEU GLY PHE GLU ALA GLU TRP THR SEQRES 26 A 347 MET ASP ARG MET LEU GLU GLU ALA ALA THR ALA ARG ARG SEQRES 27 A 347 GLN ARG LEU ALA LYS GLU GLN ARG ARG SEQRES 1 B 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 347 LEU VAL PRO ARG GLY SER HIS MET ILE LEU VAL THR GLY SEQRES 3 B 347 SER ALA GLY ARG VAL GLY ARG ALA VAL VAL ALA ALA LEU SEQRES 4 B 347 ARG THR GLN GLY ARG THR VAL ARG GLY PHE ASP LEU ARG SEQRES 5 B 347 PRO SER GLY THR GLY GLY GLU GLU VAL VAL GLY SER LEU SEQRES 6 B 347 GLU ASP GLY GLN ALA LEU SER ASP ALA ILE MET GLY VAL SEQRES 7 B 347 SER ALA VAL LEU HIS LEU GLY ALA PHE MET SER TRP ALA SEQRES 8 B 347 PRO ALA ASP ARG ASP ARG MET PHE ALA VAL ASN VAL GLU SEQRES 9 B 347 GLY THR ARG ARG LEU LEU ASP ALA ALA SER ALA ALA GLY SEQRES 10 B 347 VAL ARG ARG PHE VAL PHE ALA SER SER GLY GLU VAL TYR SEQRES 11 B 347 PRO GLU ASN ARG PRO GLU PHE LEU PRO VAL THR GLU ASP SEQRES 12 B 347 HIS PRO LEU CYS PRO ASN SER PRO TYR GLY LEU THR LYS SEQRES 13 B 347 LEU LEU GLY GLU GLU LEU VAL ARG PHE HIS GLN ARG SER SEQRES 14 B 347 GLY ALA MET GLU THR VAL ILE LEU ARG PHE SER HIS THR SEQRES 15 B 347 GLN ASP ALA THR GLU LEU LEU ASP GLU ASP SER PHE PHE SEQRES 16 B 347 SER GLY PRO ARG PHE PHE LEU ARG PRO ARG ILE HIS GLN SEQRES 17 B 347 GLN GLN ASN PHE GLY ASN ALA ALA ILE ALA GLU LEU LEU SEQRES 18 B 347 GLN SER ARG ASP ILE GLY GLU PRO SER HIS ILE LEU ALA SEQRES 19 B 347 ARG ASN GLU ASN GLY ARG PRO PHE ARG MET HIS ILE THR SEQRES 20 B 347 ASP THR ARG ASP MET VAL ALA GLY ILE LEU LEU ALA LEU SEQRES 21 B 347 ASP HIS PRO GLU ALA ALA GLY GLY THR PHE ASN LEU GLY SEQRES 22 B 347 ALA ASP GLU PRO ALA ASP PHE ALA ALA LEU LEU PRO LYS SEQRES 23 B 347 ILE ALA ALA LEU THR GLY LEU PRO ILE VAL THR VAL ASP SEQRES 24 B 347 PHE PRO GLY ASP GLY VAL TYR TYR HIS THR SER ASN GLU SEQRES 25 B 347 ARG ILE ARG ASN THR LEU GLY PHE GLU ALA GLU TRP THR SEQRES 26 B 347 MET ASP ARG MET LEU GLU GLU ALA ALA THR ALA ARG ARG SEQRES 27 B 347 GLN ARG LEU ALA LYS GLU GLN ARG ARG HET CL A 401 1 HET NAD A 402 44 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET NAD B 401 44 HET CL B 402 1 HET EDO B 403 4 HET CL B 404 1 HETNAM CL CHLORIDE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 3(CL 1-) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 12 HOH *460(H2 O) HELIX 1 1 GLY A 9 GLN A 22 1 14 HELIX 2 2 ASP A 47 MET A 56 1 10 HELIX 3 3 ALA A 71 ALA A 73 5 3 HELIX 4 4 ASP A 74 VAL A 83 1 10 HELIX 5 5 VAL A 83 ALA A 96 1 14 HELIX 6 6 GLU A 108 TYR A 110 5 3 HELIX 7 7 SER A 130 GLY A 150 1 21 HELIX 8 8 ASP A 164 LEU A 168 5 5 HELIX 9 9 PHE A 175 PHE A 181 1 7 HELIX 10 10 PHE A 181 GLY A 193 1 13 HELIX 11 11 ASN A 194 ASP A 205 1 12 HELIX 12 12 THR A 229 HIS A 242 1 14 HELIX 13 13 PRO A 243 ALA A 246 5 4 HELIX 14 14 PHE A 260 GLY A 272 1 13 HELIX 15 15 ASN A 291 GLY A 299 1 9 HELIX 16 16 THR A 305 GLN A 325 1 21 HELIX 17 17 GLY B 9 GLN B 22 1 14 HELIX 18 18 ASP B 47 MET B 56 1 10 HELIX 19 19 ALA B 71 ALA B 73 5 3 HELIX 20 20 ASP B 74 VAL B 83 1 10 HELIX 21 21 VAL B 83 ALA B 96 1 14 HELIX 22 22 GLU B 108 TYR B 110 5 3 HELIX 23 23 SER B 130 GLY B 150 1 21 HELIX 24 24 ASP B 164 LEU B 168 5 5 HELIX 25 25 PHE B 175 PHE B 181 1 7 HELIX 26 26 PHE B 181 GLY B 193 1 13 HELIX 27 27 ASN B 194 SER B 203 1 10 HELIX 28 28 THR B 229 HIS B 242 1 14 HELIX 29 29 PRO B 243 ALA B 246 5 4 HELIX 30 30 PHE B 260 GLY B 272 1 13 HELIX 31 31 ASN B 291 GLY B 299 1 9 HELIX 32 32 THR B 305 GLN B 325 1 21 SHEET 1 A 7 GLU A 40 VAL A 42 0 SHEET 2 A 7 VAL A 26 ASP A 30 1 N GLY A 28 O VAL A 41 SHEET 3 A 7 MET A 1 THR A 5 1 N ILE A 2 O ARG A 27 SHEET 4 A 7 VAL A 58 HIS A 63 1 O LEU A 62 N LEU A 3 SHEET 5 A 7 ARG A 100 SER A 106 1 O VAL A 102 N VAL A 61 SHEET 6 A 7 GLU A 153 PHE A 159 1 O LEU A 157 N SER A 105 SHEET 7 A 7 GLY A 248 LEU A 252 1 O PHE A 250 N ARG A 158 SHEET 1 B 2 HIS A 161 GLN A 163 0 SHEET 2 B 2 ILE A 226 ASP A 228 1 O THR A 227 N HIS A 161 SHEET 1 C 2 HIS A 211 ARG A 215 0 SHEET 2 C 2 ILE A 275 ASP A 279 1 O VAL A 276 N HIS A 211 SHEET 1 D 2 ARG A 223 MET A 224 0 SHEET 2 D 2 ALA A 258 ASP A 259 -1 O ALA A 258 N MET A 224 SHEET 1 E 7 GLU B 40 VAL B 42 0 SHEET 2 E 7 VAL B 26 ASP B 30 1 N GLY B 28 O VAL B 41 SHEET 3 E 7 MET B 1 THR B 5 1 N ILE B 2 O ARG B 27 SHEET 4 E 7 VAL B 58 HIS B 63 1 O LEU B 62 N LEU B 3 SHEET 5 E 7 ARG B 100 SER B 106 1 O VAL B 102 N VAL B 61 SHEET 6 E 7 GLU B 153 PHE B 159 1 O LEU B 157 N SER B 105 SHEET 7 E 7 GLY B 248 LEU B 252 1 O PHE B 250 N ARG B 158 SHEET 1 F 2 THR B 162 GLN B 163 0 SHEET 2 F 2 THR B 227 ASP B 228 1 O THR B 227 N GLN B 163 SHEET 1 G 2 HIS B 211 ARG B 215 0 SHEET 2 G 2 ILE B 275 ASP B 279 1 O VAL B 276 N LEU B 213 SHEET 1 H 2 ARG B 223 MET B 224 0 SHEET 2 H 2 ALA B 258 ASP B 259 -1 O ALA B 258 N MET B 224 CISPEP 1 TYR A 110 PRO A 111 0 0.81 CISPEP 2 LEU A 118 PRO A 119 0 -6.64 CISPEP 3 TYR B 110 PRO B 111 0 -2.09 CISPEP 4 LEU B 118 PRO B 119 0 -4.14 SITE 1 AC1 3 ARG A 179 ARG A 185 PHE A 222 SITE 1 AC2 27 GLY A 6 GLY A 9 ARG A 10 VAL A 11 SITE 2 AC2 27 ASP A 30 LEU A 31 ARG A 32 GLY A 43 SITE 3 AC2 27 SER A 44 LEU A 45 LEU A 64 GLY A 65 SITE 4 AC2 27 ALA A 66 VAL A 81 SER A 106 TYR A 132 SITE 5 AC2 27 LYS A 136 PHE A 159 HIS A 161 THR A 162 SITE 6 AC2 27 HOH A 510 HOH A 529 HOH A 558 HOH A 562 SITE 7 AC2 27 HOH A 563 HOH A 630 HOH A 664 SITE 1 AC3 5 ALA A 254 ASP A 255 ALA A 302 THR A 305 SITE 2 AC3 5 HOH A 744 SITE 1 AC4 6 ARG A 87 ASP A 91 PHE A 145 HOH A 615 SITE 2 AC4 6 ARG B 75 PHE B 79 SITE 1 AC5 2 ARG A 185 PHE A 280 SITE 1 AC6 25 GLY B 6 GLY B 9 ARG B 10 VAL B 11 SITE 2 AC6 25 ASP B 30 LEU B 31 ARG B 32 SER B 44 SITE 3 AC6 25 LEU B 45 LEU B 64 GLY B 65 ALA B 66 SITE 4 AC6 25 VAL B 81 SER B 105 SER B 106 TYR B 132 SITE 5 AC6 25 LYS B 136 PHE B 159 SER B 160 HIS B 161 SITE 6 AC6 25 THR B 162 HOH B 511 HOH B 561 HOH B 655 SITE 7 AC6 25 HOH B 692 SITE 1 AC7 3 ARG B 179 ARG B 185 PHE B 222 SITE 1 AC8 7 ARG A 75 PHE A 79 ARG B 87 ASP B 91 SITE 2 AC8 7 PHE B 145 HOH B 528 HOH B 619 SITE 1 AC9 3 GLU B 46 GLY B 48 ARG B 88 CRYST1 77.388 57.703 95.418 90.00 108.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012922 0.000000 0.004369 0.00000 SCALE2 0.000000 0.017330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011063 0.00000