HEADER TRANSFERASE 13-DEC-12 4IEB TITLE CRYSTAL STRUCTURE OF A GLY128MET MUTANT OF THE TOXOPLASMA CDPK, TITLE 2 TGME49_101440 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALMODULIN-DOMAIN PROTEIN KINASE, PUTATIVE; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1, TGGT1_059880, TGME49_101440, TGVEG_042030; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CDPKS, TOXOPLASMA, KINASE, PROTIST, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 3 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,J.D.ARTZ,M.EL BAKKOURI,M.SCHAPIRA,A.M.EDWARDS, AUTHOR 2 C.H.ARROWSMITH,C.BOUNTRA,R.HUI,M.AMANI,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 3 16-OCT-24 4IEB 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4IEB 1 REMARK REVDAT 1 25-DEC-13 4IEB 0 JRNL AUTH A.K.WERNIMONT,J.D.ARTZ,M.EL BAKKOURI,M.SCHAPIRA,A.M.EDWARDS, JRNL AUTH 2 C.H.ARROWSMITH,C.BOUNTRA,R.HUI,M.AMANI JRNL TITL CRYSTAL STRUCTURE OF A GLY128MET MUTANT OF THE TOXOPLASMA JRNL TITL 2 CDPK, TGME49_101440 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1613 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2155 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3726 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.072 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3909 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5296 ; 1.452 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 5.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;35.733 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ;14.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.654 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 593 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2886 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 508 REMARK 3 RESIDUE RANGE : A 601 A 604 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9950 -0.9000 -6.9889 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: 0.0794 REMARK 3 T33: 0.0249 T12: 0.0027 REMARK 3 T13: 0.0082 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.2923 L22: 1.1482 REMARK 3 L33: 0.6639 L12: -0.3369 REMARK 3 L13: 0.1525 L23: -0.5447 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.0118 S13: -0.0014 REMARK 3 S21: 0.0026 S22: 0.0032 S23: -0.0410 REMARK 3 S31: -0.0753 S32: -0.0014 S33: -0.0023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4IEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG3350, 0.3 M MGACETATE, 0.1 M REMARK 280 GLYCINE PH 9.5, 5 MM CACL2, 2 MM MGCL2, 5 MM AMPPNP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.08700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.18000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.34200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.18000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.08700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.34200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 HIS A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LYS A 88 REMARK 465 GLN A 89 REMARK 465 LYS A 90 REMARK 465 LEU A 271 REMARK 465 LYS A 503 REMARK 465 GLU A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 86 CG CD OE1 NE2 REMARK 470 LYS A 93 CD CE NZ REMARK 470 LYS A 121 CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 SER A 205 OG REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 GLN A 334 CG CD OE1 NE2 REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 SER A 470 OG REMARK 470 ASP A 471 CG OD1 OD2 REMARK 470 LYS A 478 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 279 O HOH A 1007 2.12 REMARK 500 OD2 ASP A 304 O HOH A 741 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 54 -111.32 -110.42 REMARK 500 ARG A 145 171.62 177.42 REMARK 500 ARG A 173 -1.01 75.27 REMARK 500 ASP A 174 46.06 -144.93 REMARK 500 ASP A 195 81.05 57.22 REMARK 500 CYS A 505 28.21 48.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 368 OD1 REMARK 620 2 ASN A 370 OD1 86.2 REMARK 620 3 ASP A 372 OD2 88.4 77.6 REMARK 620 4 GLN A 374 O 84.8 155.7 79.7 REMARK 620 5 GLU A 379 OE1 97.9 124.3 157.4 79.3 REMARK 620 6 GLU A 379 OE2 90.5 71.5 149.0 131.0 53.0 REMARK 620 7 HOH A 701 O 174.9 93.7 86.6 93.4 86.4 94.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 415 OD1 REMARK 620 2 ASP A 417 OD1 80.4 REMARK 620 3 ASN A 419 OD1 84.8 75.0 REMARK 620 4 TYR A 421 O 82.7 154.4 84.4 REMARK 620 5 GLU A 423 OE2 175.2 102.0 91.8 93.6 REMARK 620 6 GLU A 426 OE1 103.2 123.4 160.6 79.2 79.1 REMARK 620 7 GLU A 426 OE2 92.1 73.6 148.5 126.3 92.6 50.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 451 OD1 REMARK 620 2 ASP A 453 OD2 83.2 REMARK 620 3 SER A 455 OG 87.9 72.1 REMARK 620 4 LYS A 457 O 81.9 146.5 77.5 REMARK 620 5 GLU A 462 OE1 105.9 128.7 155.5 84.4 REMARK 620 6 GLU A 462 OE2 100.6 75.9 145.6 136.5 52.8 REMARK 620 7 HOH A 702 O 165.4 93.5 77.6 93.4 87.3 92.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 485 OD2 REMARK 620 2 ASN A 487 OD1 82.2 REMARK 620 3 ASP A 489 OD1 86.4 78.8 REMARK 620 4 GLU A 491 O 90.0 155.2 77.3 REMARK 620 5 GLU A 496 OE1 109.4 123.5 153.3 81.3 REMARK 620 6 GLU A 496 OE2 89.7 73.8 152.6 129.9 52.0 REMARK 620 7 HOH A 816 O 166.4 90.1 81.2 92.5 84.1 98.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 605 DBREF 4IEB A 1 507 UNP Q9BJF5 Q9BJF5_TOXGO 1 507 SEQADV 4IEB MET A 128 UNP Q9BJF5 GLY 128 ENGINEERED MUTATION SEQADV 4IEB LEU A 508 UNP Q9BJF5 EXPRESSION TAG SEQADV 4IEB GLU A 509 UNP Q9BJF5 EXPRESSION TAG SEQADV 4IEB HIS A 510 UNP Q9BJF5 EXPRESSION TAG SEQADV 4IEB HIS A 511 UNP Q9BJF5 EXPRESSION TAG SEQADV 4IEB HIS A 512 UNP Q9BJF5 EXPRESSION TAG SEQADV 4IEB HIS A 513 UNP Q9BJF5 EXPRESSION TAG SEQADV 4IEB HIS A 514 UNP Q9BJF5 EXPRESSION TAG SEQADV 4IEB HIS A 515 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 515 MET GLY GLN GLN GLU SER THR LEU GLY GLY ALA ALA GLY SEQRES 2 A 515 GLU PRO ARG SER ARG GLY HIS ALA ALA GLY THR SER GLY SEQRES 3 A 515 GLY PRO GLY ASP HIS LEU HIS ALA THR PRO GLY MET PHE SEQRES 4 A 515 VAL GLN HIS SER THR ALA ILE PHE SER ASP ARG TYR LYS SEQRES 5 A 515 GLY GLN ARG VAL LEU GLY LYS GLY SER PHE GLY GLU VAL SEQRES 6 A 515 ILE LEU CYS LYS ASP LYS ILE THR GLY GLN GLU CYS ALA SEQRES 7 A 515 VAL LYS VAL ILE SER LYS ARG GLN VAL LYS GLN LYS THR SEQRES 8 A 515 ASP LYS GLU SER LEU LEU ARG GLU VAL GLN LEU LEU LYS SEQRES 9 A 515 GLN LEU ASP HIS PRO ASN ILE MET LYS LEU TYR GLU PHE SEQRES 10 A 515 PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL MET GLU VAL SEQRES 11 A 515 TYR THR GLY GLY GLU LEU PHE ASP GLU ILE ILE SER ARG SEQRES 12 A 515 LYS ARG PHE SER GLU VAL ASP ALA ALA ARG ILE ILE ARG SEQRES 13 A 515 GLN VAL LEU SER GLY ILE THR TYR MET HIS LYS ASN LYS SEQRES 14 A 515 ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN LEU LEU LEU SEQRES 15 A 515 GLU SER LYS SER LYS ASP ALA ASN ILE ARG ILE ILE ASP SEQRES 16 A 515 PHE GLY LEU SER THR HIS PHE GLU ALA SER LYS LYS MET SEQRES 17 A 515 LYS ASP LYS ILE GLY THR ALA TYR TYR ILE ALA PRO GLU SEQRES 18 A 515 VAL LEU HIS GLY THR TYR ASP GLU LYS CYS ASP VAL TRP SEQRES 19 A 515 SER THR GLY VAL ILE LEU TYR ILE LEU LEU SER GLY CYS SEQRES 20 A 515 PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP ILE LEU LYS SEQRES 21 A 515 LYS VAL GLU LYS GLY LYS TYR THR PHE GLU LEU PRO GLN SEQRES 22 A 515 TRP LYS LYS VAL SER GLU SER ALA LYS ASP LEU ILE ARG SEQRES 23 A 515 LYS MET LEU THR TYR VAL PRO SER MET ARG ILE SER ALA SEQRES 24 A 515 ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN THR TYR THR SEQRES 25 A 515 LYS GLU GLN ILE SER VAL ASP VAL PRO SER LEU ASP ASN SEQRES 26 A 515 ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY THR GLN LYS SEQRES 27 A 515 LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SER LYS LEU SEQRES 28 A 515 THR SER GLN ASP GLU THR LYS GLU LEU THR ALA ILE PHE SEQRES 29 A 515 HIS LYS MET ASP LYS ASN GLY ASP GLY GLN LEU ASP ARG SEQRES 30 A 515 ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU MET ARG MET SEQRES 31 A 515 LYS GLY GLN ASP ALA SER MET LEU ASP ALA SER ALA VAL SEQRES 32 A 515 GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA VAL ASP PHE SEQRES 33 A 515 ASP LYS ASN GLY TYR ILE GLU TYR SER GLU PHE VAL THR SEQRES 34 A 515 VAL ALA MET ASP ARG LYS THR LEU LEU SER ARG GLU ARG SEQRES 35 A 515 LEU GLU ARG ALA PHE ARG MET PHE ASP SER ASP ASN SER SEQRES 36 A 515 GLY LYS ILE SER SER THR GLU LEU ALA THR ILE PHE GLY SEQRES 37 A 515 VAL SER ASP VAL ASP SER GLU THR TRP LYS SER VAL LEU SEQRES 38 A 515 SER GLU VAL ASP LYS ASN ASN ASP GLY GLU VAL ASP PHE SEQRES 39 A 515 ASP GLU PHE GLN GLN MET LEU LEU LYS LEU CYS GLY ASN SEQRES 40 A 515 LEU GLU HIS HIS HIS HIS HIS HIS HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HET CA A 604 1 HET ANP A 605 62 HETNAM CA CALCIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 CA 4(CA 2+) FORMUL 6 ANP C10 H17 N6 O12 P3 FORMUL 7 HOH *321(H2 O) HELIX 1 1 THR A 35 VAL A 40 5 6 HELIX 2 2 ILE A 46 ASP A 49 5 4 HELIX 3 3 ASP A 92 GLN A 105 1 14 HELIX 4 4 GLU A 135 ILE A 141 1 7 HELIX 5 5 SER A 147 ASN A 168 1 22 HELIX 6 6 LYS A 176 GLU A 178 5 3 HELIX 7 7 THR A 214 ILE A 218 5 5 HELIX 8 8 ALA A 219 GLY A 225 1 7 HELIX 9 9 GLU A 229 GLY A 246 1 18 HELIX 10 10 ASN A 254 GLY A 265 1 12 HELIX 11 11 GLU A 270 GLU A 270 5 1 HELIX 12 12 PRO A 272 VAL A 277 5 6 HELIX 13 13 SER A 278 LEU A 289 1 12 HELIX 14 14 VAL A 292 ARG A 296 5 5 HELIX 15 15 SER A 298 ASP A 304 1 7 HELIX 16 16 HIS A 305 THR A 310 1 6 HELIX 17 17 ASP A 319 GLN A 332 1 14 HELIX 18 18 GLN A 337 LEU A 351 1 15 HELIX 19 19 GLN A 354 GLU A 356 5 3 HELIX 20 20 THR A 357 ASP A 368 1 12 HELIX 21 21 ASP A 376 GLY A 392 1 17 HELIX 22 22 ASP A 394 LEU A 398 5 5 HELIX 23 23 SER A 401 ASP A 415 1 15 HELIX 24 24 TYR A 424 MET A 432 1 9 HELIX 25 25 ASP A 433 LEU A 438 1 6 HELIX 26 26 SER A 439 ASP A 451 1 13 HELIX 27 27 SER A 459 PHE A 467 1 9 HELIX 28 28 ASP A 473 ASP A 485 1 13 HELIX 29 29 PHE A 494 LEU A 502 1 9 SHEET 1 A 5 TYR A 51 VAL A 56 0 SHEET 2 A 5 VAL A 65 ASP A 70 -1 O LEU A 67 N GLN A 54 SHEET 3 A 5 GLU A 76 SER A 83 -1 O VAL A 79 N ILE A 66 SHEET 4 A 5 TYR A 123 MET A 128 -1 O MET A 128 N ALA A 78 SHEET 5 A 5 LEU A 114 GLU A 119 -1 N GLU A 116 O VAL A 127 SHEET 1 B 2 ILE A 170 VAL A 171 0 SHEET 2 B 2 THR A 200 HIS A 201 -1 O THR A 200 N VAL A 171 SHEET 1 C 2 LEU A 180 LEU A 182 0 SHEET 2 C 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 D 2 GLN A 374 LEU A 375 0 SHEET 2 D 2 ILE A 422 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 E 2 LYS A 457 ILE A 458 0 SHEET 2 E 2 VAL A 492 ASP A 493 -1 O VAL A 492 N ILE A 458 SSBOND 1 CYS A 247 CYS A 505 1555 2555 2.21 LINK OD1 ASP A 368 CA CA A 602 1555 1555 2.13 LINK OD1 ASN A 370 CA CA A 602 1555 1555 2.37 LINK OD2 ASP A 372 CA CA A 602 1555 1555 2.43 LINK O GLN A 374 CA CA A 602 1555 1555 2.34 LINK OE1 GLU A 379 CA CA A 602 1555 1555 2.41 LINK OE2 GLU A 379 CA CA A 602 1555 1555 2.51 LINK OD1 ASP A 415 CA CA A 601 1555 1555 2.20 LINK OD1 ASP A 417 CA CA A 601 1555 1555 2.42 LINK OD1 ASN A 419 CA CA A 601 1555 1555 2.44 LINK O TYR A 421 CA CA A 601 1555 1555 2.33 LINK OE2 GLU A 423 CA CA A 601 1555 1555 2.27 LINK OE1 GLU A 426 CA CA A 601 1555 1555 2.44 LINK OE2 GLU A 426 CA CA A 601 1555 1555 2.69 LINK OD1 ASP A 451 CA CA A 603 1555 1555 2.22 LINK OD2 ASP A 453 CA CA A 603 1555 1555 2.39 LINK OG SER A 455 CA CA A 603 1555 1555 2.46 LINK O LYS A 457 CA CA A 603 1555 1555 2.36 LINK OE1 GLU A 462 CA CA A 603 1555 1555 2.41 LINK OE2 GLU A 462 CA CA A 603 1555 1555 2.52 LINK OD2 ASP A 485 CA CA A 604 1555 1555 2.21 LINK OD1 ASN A 487 CA CA A 604 1555 1555 2.46 LINK OD1 ASP A 489 CA CA A 604 1555 1555 2.37 LINK O GLU A 491 CA CA A 604 1555 1555 2.37 LINK OE1 GLU A 496 CA CA A 604 1555 1555 2.40 LINK OE2 GLU A 496 CA CA A 604 1555 1555 2.56 LINK CA CA A 602 O HOH A 701 1555 1555 2.31 LINK CA CA A 603 O HOH A 702 1555 1555 2.29 LINK CA CA A 604 O HOH A 816 1555 1555 2.16 SITE 1 AC1 6 ASP A 415 ASP A 417 ASN A 419 TYR A 421 SITE 2 AC1 6 GLU A 423 GLU A 426 SITE 1 AC2 6 ASP A 368 ASN A 370 ASP A 372 GLN A 374 SITE 2 AC2 6 GLU A 379 HOH A 701 SITE 1 AC3 6 ASP A 451 ASP A 453 SER A 455 LYS A 457 SITE 2 AC3 6 GLU A 462 HOH A 702 SITE 1 AC4 6 ASP A 485 ASN A 487 ASP A 489 GLU A 491 SITE 2 AC4 6 GLU A 496 HOH A 816 SITE 1 AC5 16 GLY A 58 LYS A 59 VAL A 65 ALA A 78 SITE 2 AC5 16 LYS A 80 GLU A 129 TYR A 131 GLU A 135 SITE 3 AC5 16 LEU A 181 ASP A 195 HOH A 727 HOH A 752 SITE 4 AC5 16 HOH A 884 HOH A 927 HOH A 938 HOH A 982 CRYST1 50.174 96.684 102.360 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019931 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009769 0.00000