HEADER TRANSFERASE 14-DEC-12 4IFC TITLE CRYSTAL STRUCTURE OF ADP-BOUND HUMAN PRPF4B KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PRP4 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: PRP4 KINASE, PRP4 PRE-MRNA-PROCESSING FACTOR 4 HOMOLOG; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0536, PRP4, PRP4H, PRP4K, PRPF4B; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.MECHIN,K.HAAS,X.CHEN,Y.ZHANG,L.MCLEAN REVDAT 3 06-NOV-13 4IFC 1 JRNL REVDAT 2 18-SEP-13 4IFC 1 JRNL REVDAT 1 28-AUG-13 4IFC 0 JRNL AUTH Q.GAO,I.MECHIN,N.KOTHARI,Z.GUO,G.DENG,K.HAAS,J.MCMANUS, JRNL AUTH 2 D.HOFFMANN,A.WANG,D.WIEDERSCHAIN,J.ROCNIK,W.CZECHTIZKY, JRNL AUTH 3 X.CHEN,L.MCLEAN,H.ARLT,D.HARPER,F.LIU,T.MAJID,V.PATEL, JRNL AUTH 4 C.LENGAUER,C.GARCIA-ECHEVERRIA,B.ZHANG,H.CHENG,M.DORSCH, JRNL AUTH 5 S.M.HUANG JRNL TITL EVALUATION OF CANCER DEPENDENCE AND DRUGGABILITY OF PRP4 JRNL TITL 2 KINASE USING CELLULAR, BIOCHEMICAL, AND STRUCTURAL JRNL TITL 3 APPROACHES. JRNL REF J.BIOL.CHEM. V. 288 30125 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24003220 JRNL DOI 10.1074/JBC.M113.473348 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 42249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2127 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.07 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2839 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2662 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2695 REMARK 3 BIN R VALUE (WORKING SET) : 0.2646 REMARK 3 BIN FREE R VALUE : 0.2959 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.07 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.19900 REMARK 3 B22 (A**2) : -1.65410 REMARK 3 B33 (A**2) : 5.85300 REMARK 3 B12 (A**2) : 12.07170 REMARK 3 B13 (A**2) : -5.51910 REMARK 3 B23 (A**2) : -6.32130 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.29 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5607 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7572 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2005 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 156 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 777 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5549 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 704 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6399 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.72 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.71 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-13. REMARK 100 THE RCSB ID CODE IS RCSB076681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 20-30% PEG 3350 REMARK 280 AND 0.1M HEPES PH7.0 5 MM ADP FINAL CONCENTRATION ADDED TO CRYO- REMARK 280 PROTECTANT SOLUTION FOR SOAKING OF APO CRYSTALS, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 656 REMARK 465 ASP A 657 REMARK 465 PHE A 658 REMARK 465 LYS A 659 REMARK 465 GLU A 660 REMARK 465 ASN A 661 REMARK 465 PRO A 662 REMARK 465 ASN A 663 REMARK 465 LEU A 664 REMARK 465 ARG A 665 REMARK 465 ASP A 666 REMARK 465 ASN A 667 REMARK 465 VAL A 934 REMARK 465 ASP A 935 REMARK 465 LYS A 936 REMARK 465 VAL A 937 REMARK 465 THR A 938 REMARK 465 GLU A 939 REMARK 465 GLY A 961 REMARK 465 CYS A 962 REMARK 465 GLN A 963 REMARK 465 ARG A 964 REMARK 465 LYS A 1006 REMARK 465 ILE A 1007 REMARK 465 HIS A 1008 REMARK 465 HIS A 1009 REMARK 465 HIS A 1010 REMARK 465 HIS A 1011 REMARK 465 HIS A 1012 REMARK 465 HIS A 1013 REMARK 465 MET B 656 REMARK 465 ASP B 657 REMARK 465 PHE B 658 REMARK 465 LYS B 659 REMARK 465 GLU B 660 REMARK 465 ASN B 661 REMARK 465 PRO B 662 REMARK 465 ASN B 663 REMARK 465 LEU B 664 REMARK 465 ARG B 665 REMARK 465 ASP B 666 REMARK 465 ASN B 667 REMARK 465 TRP B 668 REMARK 465 THR B 669 REMARK 465 GLY B 696 REMARK 465 LYS B 936 REMARK 465 VAL B 937 REMARK 465 THR B 938 REMARK 465 GLY B 961 REMARK 465 CYS B 962 REMARK 465 LYS B 1006 REMARK 465 ILE B 1007 REMARK 465 HIS B 1008 REMARK 465 HIS B 1009 REMARK 465 HIS B 1010 REMARK 465 HIS B 1011 REMARK 465 HIS B 1012 REMARK 465 HIS B 1013 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 695 CG CD OE1 NE2 REMARK 470 VAL A 697 CG1 CG2 REMARK 470 GLN B 695 CG CD OE1 NE2 REMARK 470 VAL B 697 CG1 CG2 REMARK 470 PHE B 698 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 939 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 676 -49.26 80.08 REMARK 500 VAL A 677 149.97 69.96 REMARK 500 ARG A 686 -37.39 -145.00 REMARK 500 THR A 693 -63.93 60.67 REMARK 500 PHE A 698 -5.17 80.88 REMARK 500 ASN A 721 -110.70 -69.15 REMARK 500 ASN A 722 -140.02 42.72 REMARK 500 GLU A 723 -51.28 -120.33 REMARK 500 HIS A 749 50.01 30.15 REMARK 500 GLN A 761 -24.31 85.17 REMARK 500 ASN A 810 55.25 -103.96 REMARK 500 ASP A 815 38.62 -164.91 REMARK 500 ASP A 834 82.85 58.81 REMARK 500 ASN A 844 77.13 24.36 REMARK 500 VAL A 851 141.41 75.99 REMARK 500 ARG A 853 -53.31 -29.31 REMARK 500 ASP A 867 -140.54 -138.73 REMARK 500 PHE A 918 46.04 -93.17 REMARK 500 LYS A 942 113.74 57.77 REMARK 500 VAL B 677 106.02 45.02 REMARK 500 ARG B 686 -36.53 -148.70 REMARK 500 HIS B 749 55.83 32.45 REMARK 500 GLN B 761 -16.26 80.95 REMARK 500 ASP B 815 39.93 -165.18 REMARK 500 ASP B 834 85.75 59.35 REMARK 500 VAL B 851 140.04 75.02 REMARK 500 ARG B 853 -52.65 -27.60 REMARK 500 ASP B 867 -146.07 -133.37 REMARK 500 PHE B 918 31.06 -91.03 REMARK 500 ARG B 964 89.77 40.14 REMARK 500 LEU B 984 28.38 -79.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 677 22.9 L L OUTSIDE RANGE REMARK 500 PHE A 698 25.0 L L OUTSIDE RANGE REMARK 500 GLU A1005 24.8 L L OUTSIDE RANGE REMARK 500 VAL B 677 22.3 L L OUTSIDE RANGE REMARK 500 ARG B 964 24.0 L L OUTSIDE RANGE REMARK 500 GLU B1005 23.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1266 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1268 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A1297 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH A1313 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH A1347 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1349 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A1373 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B1262 DISTANCE = 5.78 ANGSTROMS REMARK 525 HOH B1281 DISTANCE = 6.16 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IAN RELATED DB: PDB REMARK 900 RELATED ID: 4IIR RELATED DB: PDB REMARK 900 RELATED ID: 4IJP RELATED DB: PDB DBREF 4IFC A 657 1007 UNP Q13523 PRP4B_HUMAN 657 1007 DBREF 4IFC B 657 1007 UNP Q13523 PRP4B_HUMAN 657 1007 SEQADV 4IFC MET A 656 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS A 1008 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS A 1009 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS A 1010 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS A 1011 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS A 1012 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS A 1013 UNP Q13523 EXPRESSION TAG SEQADV 4IFC MET B 656 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS B 1008 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS B 1009 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS B 1010 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS B 1011 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS B 1012 UNP Q13523 EXPRESSION TAG SEQADV 4IFC HIS B 1013 UNP Q13523 EXPRESSION TAG SEQRES 1 A 358 MET ASP PHE LYS GLU ASN PRO ASN LEU ARG ASP ASN TRP SEQRES 2 A 358 THR ASP ALA GLU GLY TYR TYR ARG VAL ASN ILE GLY GLU SEQRES 3 A 358 VAL LEU ASP LYS ARG TYR ASN VAL TYR GLY TYR THR GLY SEQRES 4 A 358 GLN GLY VAL PHE SER ASN VAL VAL ARG ALA ARG ASP ASN SEQRES 5 A 358 ALA ARG ALA ASN GLN GLU VAL ALA VAL LYS ILE ILE ARG SEQRES 6 A 358 ASN ASN GLU LEU MET GLN LYS THR GLY LEU LYS GLU LEU SEQRES 7 A 358 GLU PHE LEU LYS LYS LEU ASN ASP ALA ASP PRO ASP ASP SEQRES 8 A 358 LYS PHE HIS CYS LEU ARG LEU PHE ARG HIS PHE TYR HIS SEQRES 9 A 358 LYS GLN HIS LEU CYS LEU VAL PHE GLU PRO LEU SER MET SEQRES 10 A 358 ASN LEU ARG GLU VAL LEU LYS LYS TYR GLY LYS ASP VAL SEQRES 11 A 358 GLY LEU HIS ILE LYS ALA VAL ARG SER TYR SER GLN GLN SEQRES 12 A 358 LEU PHE LEU ALA LEU LYS LEU LEU LYS ARG CYS ASN ILE SEQRES 13 A 358 LEU HIS ALA ASP ILE LYS PRO ASP ASN ILE LEU VAL ASN SEQRES 14 A 358 GLU SER LYS THR ILE LEU LYS LEU CYS ASP PHE GLY SER SEQRES 15 A 358 ALA SER HIS VAL ALA ASP ASN ASP ILE THR PRO PTR LEU SEQRES 16 A 358 VAL SER ARG PHE TYR ARG ALA PRO GLU ILE ILE ILE GLY SEQRES 17 A 358 LYS SER TYR ASP TYR GLY ILE ASP MET TRP SER VAL GLY SEQRES 18 A 358 CYS THR LEU TYR GLU LEU TYR THR GLY LYS ILE LEU PHE SEQRES 19 A 358 PRO GLY LYS THR ASN ASN HIS MET LEU LYS LEU ALA MET SEQRES 20 A 358 ASP LEU LYS GLY LYS MET PRO ASN LYS MET ILE ARG LYS SEQRES 21 A 358 GLY VAL PHE LYS ASP GLN HIS PHE ASP GLN ASN LEU ASN SEQRES 22 A 358 PHE MET TYR ILE GLU VAL ASP LYS VAL THR GLU ARG GLU SEQRES 23 A 358 LYS VAL THR VAL MET SER THR ILE ASN PRO THR LYS ASP SEQRES 24 A 358 LEU LEU ALA ASP LEU ILE GLY CYS GLN ARG LEU PRO GLU SEQRES 25 A 358 ASP GLN ARG LYS LYS VAL HIS GLN LEU LYS ASP LEU LEU SEQRES 26 A 358 ASP GLN ILE LEU MET LEU ASP PRO ALA LYS ARG ILE SER SEQRES 27 A 358 ILE ASN GLN ALA LEU GLN HIS ALA PHE ILE GLN GLU LYS SEQRES 28 A 358 ILE HIS HIS HIS HIS HIS HIS SEQRES 1 B 358 MET ASP PHE LYS GLU ASN PRO ASN LEU ARG ASP ASN TRP SEQRES 2 B 358 THR ASP ALA GLU GLY TYR TYR ARG VAL ASN ILE GLY GLU SEQRES 3 B 358 VAL LEU ASP LYS ARG TYR ASN VAL TYR GLY TYR THR GLY SEQRES 4 B 358 GLN GLY VAL PHE SER ASN VAL VAL ARG ALA ARG ASP ASN SEQRES 5 B 358 ALA ARG ALA ASN GLN GLU VAL ALA VAL LYS ILE ILE ARG SEQRES 6 B 358 ASN ASN GLU LEU MET GLN LYS THR GLY LEU LYS GLU LEU SEQRES 7 B 358 GLU PHE LEU LYS LYS LEU ASN ASP ALA ASP PRO ASP ASP SEQRES 8 B 358 LYS PHE HIS CYS LEU ARG LEU PHE ARG HIS PHE TYR HIS SEQRES 9 B 358 LYS GLN HIS LEU CYS LEU VAL PHE GLU PRO LEU SER MET SEQRES 10 B 358 ASN LEU ARG GLU VAL LEU LYS LYS TYR GLY LYS ASP VAL SEQRES 11 B 358 GLY LEU HIS ILE LYS ALA VAL ARG SER TYR SER GLN GLN SEQRES 12 B 358 LEU PHE LEU ALA LEU LYS LEU LEU LYS ARG CYS ASN ILE SEQRES 13 B 358 LEU HIS ALA ASP ILE LYS PRO ASP ASN ILE LEU VAL ASN SEQRES 14 B 358 GLU SER LYS THR ILE LEU LYS LEU CYS ASP PHE GLY SER SEQRES 15 B 358 ALA SER HIS VAL ALA ASP ASN ASP ILE THR PRO PTR LEU SEQRES 16 B 358 VAL SER ARG PHE TYR ARG ALA PRO GLU ILE ILE ILE GLY SEQRES 17 B 358 LYS SER TYR ASP TYR GLY ILE ASP MET TRP SER VAL GLY SEQRES 18 B 358 CYS THR LEU TYR GLU LEU TYR THR GLY LYS ILE LEU PHE SEQRES 19 B 358 PRO GLY LYS THR ASN ASN HIS MET LEU LYS LEU ALA MET SEQRES 20 B 358 ASP LEU LYS GLY LYS MET PRO ASN LYS MET ILE ARG LYS SEQRES 21 B 358 GLY VAL PHE LYS ASP GLN HIS PHE ASP GLN ASN LEU ASN SEQRES 22 B 358 PHE MET TYR ILE GLU VAL ASP LYS VAL THR GLU ARG GLU SEQRES 23 B 358 LYS VAL THR VAL MET SER THR ILE ASN PRO THR LYS ASP SEQRES 24 B 358 LEU LEU ALA ASP LEU ILE GLY CYS GLN ARG LEU PRO GLU SEQRES 25 B 358 ASP GLN ARG LYS LYS VAL HIS GLN LEU LYS ASP LEU LEU SEQRES 26 B 358 ASP GLN ILE LEU MET LEU ASP PRO ALA LYS ARG ILE SER SEQRES 27 B 358 ILE ASN GLN ALA LEU GLN HIS ALA PHE ILE GLN GLU LYS SEQRES 28 B 358 ILE HIS HIS HIS HIS HIS HIS MODRES 4IFC PTR A 849 TYR O-PHOSPHOTYROSINE MODRES 4IFC PTR B 849 TYR O-PHOSPHOTYROSINE HET PTR A 849 16 HET PTR B 849 16 HET ADP A1101 27 HET SO4 A1102 5 HET ADP B1101 27 HET SO4 B1102 5 HET SO4 B1103 5 HETNAM PTR O-PHOSPHOTYROSINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *333(H2 O) HELIX 1 1 ALA A 708 ALA A 710 5 3 HELIX 2 2 GLU A 723 ASP A 743 1 21 HELIX 3 3 LEU A 774 GLY A 782 1 9 HELIX 4 4 HIS A 788 CYS A 809 1 22 HELIX 5 5 LYS A 817 ASP A 819 5 3 HELIX 6 6 SER A 852 ARG A 856 5 5 HELIX 7 7 ALA A 857 GLY A 863 1 7 HELIX 8 8 TYR A 868 GLY A 885 1 18 HELIX 9 9 THR A 893 GLY A 906 1 14 HELIX 10 10 PRO A 909 GLY A 916 1 8 HELIX 11 11 ASP A 954 ILE A 960 1 7 HELIX 12 12 PRO A 966 LEU A 984 1 19 HELIX 13 13 ASP A 987 ARG A 991 5 5 HELIX 14 14 SER A 993 GLN A 999 1 7 HELIX 15 15 HIS A 1000 GLU A 1005 1 6 HELIX 16 16 ALA B 708 ALA B 710 5 3 HELIX 17 17 ASN B 722 ASP B 743 1 22 HELIX 18 18 LEU B 774 GLY B 782 1 9 HELIX 19 19 HIS B 788 CYS B 809 1 22 HELIX 20 20 LYS B 817 ASP B 819 5 3 HELIX 21 21 SER B 852 ARG B 856 5 5 HELIX 22 22 ALA B 857 GLY B 863 1 7 HELIX 23 23 TYR B 868 GLY B 885 1 18 HELIX 24 24 THR B 893 GLY B 906 1 14 HELIX 25 25 PRO B 909 GLY B 916 1 8 HELIX 26 26 ASP B 954 ILE B 960 1 7 HELIX 27 27 PRO B 966 LEU B 984 1 19 HELIX 28 28 SER B 993 GLN B 999 1 7 HELIX 29 29 HIS B 1000 GLU B 1005 1 6 SHEET 1 A 4 VAL A 682 LEU A 683 0 SHEET 2 A 4 TYR A 687 VAL A 689 -1 O TYR A 687 N LEU A 683 SHEET 3 A 4 SER A 699 ASP A 706 -1 O ARG A 705 N ASN A 688 SHEET 4 A 4 GLY A 694 GLN A 695 -1 N GLY A 694 O VAL A 701 SHEET 1 B 6 VAL A 682 LEU A 683 0 SHEET 2 B 6 TYR A 687 VAL A 689 -1 O TYR A 687 N LEU A 683 SHEET 3 B 6 SER A 699 ASP A 706 -1 O ARG A 705 N ASN A 688 SHEET 4 B 6 GLU A 713 ILE A 719 -1 O ILE A 718 N ASN A 700 SHEET 5 B 6 HIS A 762 PHE A 767 -1 O PHE A 767 N ALA A 715 SHEET 6 B 6 LEU A 753 HIS A 759 -1 N PHE A 757 O CYS A 764 SHEET 1 C 3 MET A 772 ASN A 773 0 SHEET 2 C 3 ILE A 821 VAL A 823 -1 O VAL A 823 N MET A 772 SHEET 3 C 3 LEU A 830 LEU A 832 -1 O LYS A 831 N LEU A 822 SHEET 1 D 2 ILE A 811 LEU A 812 0 SHEET 2 D 2 SER A 839 HIS A 840 -1 O SER A 839 N LEU A 812 SHEET 1 E 2 PHE A 929 ILE A 932 0 SHEET 2 E 2 VAL A 943 MET A 946 -1 O MET A 946 N PHE A 929 SHEET 1 F 6 VAL B 682 LEU B 683 0 SHEET 2 F 6 TYR B 687 GLY B 694 -1 O TYR B 687 N LEU B 683 SHEET 3 F 6 SER B 699 ASP B 706 -1 O VAL B 701 N GLY B 694 SHEET 4 F 6 GLU B 713 ILE B 719 -1 O ILE B 718 N ASN B 700 SHEET 5 F 6 HIS B 762 PHE B 767 -1 O PHE B 767 N ALA B 715 SHEET 6 F 6 LEU B 753 HIS B 759 -1 N PHE B 757 O CYS B 764 SHEET 1 G 3 MET B 772 ASN B 773 0 SHEET 2 G 3 ILE B 821 VAL B 823 -1 O VAL B 823 N MET B 772 SHEET 3 G 3 LEU B 830 LEU B 832 -1 O LYS B 831 N LEU B 822 SHEET 1 H 2 ILE B 811 LEU B 812 0 SHEET 2 H 2 SER B 839 HIS B 840 -1 O SER B 839 N LEU B 812 SHEET 1 I 2 PHE B 929 VAL B 934 0 SHEET 2 I 2 GLU B 941 MET B 946 -1 O LYS B 942 N GLU B 933 LINK C PRO A 848 N PTR A 849 1555 1555 1.34 LINK C PTR A 849 N LEU A 850 1555 1555 1.35 LINK C PRO B 848 N PTR B 849 1555 1555 1.35 LINK C PTR B 849 N LEU B 850 1555 1555 1.35 CISPEP 1 GLN A 695 GLY A 696 0 0.23 CISPEP 2 GLY A 696 VAL A 697 0 -0.16 SITE 1 AC1 18 THR A 693 VAL A 697 PHE A 698 SER A 699 SITE 2 AC1 18 VAL A 701 ALA A 715 LYS A 717 LEU A 751 SITE 3 AC1 18 PHE A 767 GLU A 768 LEU A 770 ASN A 773 SITE 4 AC1 18 ASP A 819 ASP A 834 HOH A1244 HOH A1298 SITE 5 AC1 18 HOH A1303 HOH A1382 SITE 1 AC2 5 PTR A 849 ARG A 853 ARG A 856 HOH A1229 SITE 2 AC2 5 HOH A1378 SITE 1 AC3 14 THR B 693 VAL B 697 PHE B 698 SER B 699 SITE 2 AC3 14 VAL B 701 ALA B 715 LYS B 717 PHE B 767 SITE 3 AC3 14 GLU B 768 LEU B 770 ASN B 773 ASP B 819 SITE 4 AC3 14 LEU B 822 ASP B 834 SITE 1 AC4 4 ARG A 709 ARG B 686 ARG B 709 ARG B 755 SITE 1 AC5 4 PTR B 849 ARG B 853 ARG B 856 HOH B1226 CRYST1 52.320 52.260 78.980 104.47 104.63 93.01 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019113 0.001005 0.005470 0.00000 SCALE2 0.000000 0.019162 0.005423 0.00000 SCALE3 0.000000 0.000000 0.013600 0.00000