HEADER HYDROLASE/HYDROLASE INHIBITOR 15-DEC-12 4IFW TITLE CRYSTAL STRUCTURE OF TREPONEMA PALLIDUM TP0796 FLAVIN TRAFFICKING TITLE 2 PROTEIN, ADP INHIBITED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TREPONEMA PALLIDUM SUBSP. PALLIDUM; SOURCE 3 ORGANISM_TAXID: 243276; SOURCE 4 STRAIN: NICHOLS; SOURCE 5 GENE: APBE, TP0796, TP_0796; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYDROLASE, BIMETAL CENTER, FAD PYROPHOSPHATASE, FLAVIN TURNOVER, KEYWDS 2 TREPONEMA PALLIDUM, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,C.A.BRAUTIGAM,R.K.DEKA,M.V.NORGARD REVDAT 6 20-SEP-23 4IFW 1 REMARK LINK REVDAT 5 15-NOV-17 4IFW 1 REMARK REVDAT 4 08-MAY-13 4IFW 1 JRNL REVDAT 3 13-MAR-13 4IFW 1 JRNL REVDAT 2 06-MAR-13 4IFW 1 TITLE REVDAT 1 27-FEB-13 4IFW 0 JRNL AUTH R.K.DEKA,C.A.BRAUTIGAM,W.Z.LIU,D.R.TOMCHICK,M.V.NORGARD JRNL TITL THE TP0796 LIPOPROTEIN OF TREPONEMA PALLIDUM IS A JRNL TITL 2 BIMETAL-DEPENDENT FAD PYROPHOSPHATASE WITH A POTENTIAL ROLE JRNL TITL 3 IN FLAVIN HOMEOSTASIS. JRNL REF J.BIOL.CHEM. V. 288 11106 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23447540 JRNL DOI 10.1074/JBC.M113.449975 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6565 - 3.9307 1.00 2690 138 0.1670 0.2219 REMARK 3 2 3.9307 - 3.1210 1.00 2653 131 0.1639 0.2156 REMARK 3 3 3.1210 - 2.7268 1.00 2621 127 0.1790 0.2552 REMARK 3 4 2.7268 - 2.4776 0.99 2566 142 0.1967 0.2529 REMARK 3 5 2.4776 - 2.3001 0.96 2518 135 0.2129 0.2886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2587 REMARK 3 ANGLE : 0.795 3529 REMARK 3 CHIRALITY : 0.043 402 REMARK 3 PLANARITY : 0.002 454 REMARK 3 DIHEDRAL : 14.794 927 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6455 46.1832 -0.0390 REMARK 3 T TENSOR REMARK 3 T11: -0.0853 T22: 0.0524 REMARK 3 T33: 0.0053 T12: 0.0410 REMARK 3 T13: -0.0350 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.0490 L22: 0.0347 REMARK 3 L33: 0.0177 L12: -0.0318 REMARK 3 L13: 0.0002 L23: -0.0011 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.0115 S13: 0.0663 REMARK 3 S21: 0.0298 S22: -0.0121 S23: -0.0563 REMARK 3 S31: 0.0006 S32: 0.0222 S33: 0.0609 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5116 49.1634 16.7108 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: -0.1793 REMARK 3 T33: -0.0008 T12: 0.1109 REMARK 3 T13: 0.0394 T23: -0.0845 REMARK 3 L TENSOR REMARK 3 L11: 0.0296 L22: 0.2445 REMARK 3 L33: 0.1087 L12: 0.0381 REMARK 3 L13: 0.0180 L23: -0.1081 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.0650 S13: 0.0510 REMARK 3 S21: 0.2169 S22: -0.0436 S23: 0.0469 REMARK 3 S31: -0.1109 S32: -0.0623 S33: -0.1215 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5033 39.2498 27.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.0597 REMARK 3 T33: 0.0587 T12: 0.0063 REMARK 3 T13: 0.0445 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.0618 L22: 0.0607 REMARK 3 L33: 0.1156 L12: 0.0440 REMARK 3 L13: 0.0325 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.0262 S13: 0.0485 REMARK 3 S21: 0.1297 S22: -0.0067 S23: 0.1018 REMARK 3 S31: -0.0154 S32: -0.1338 S33: -0.0093 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7529 39.4057 4.7881 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: -0.0029 REMARK 3 T33: -0.1099 T12: -0.0318 REMARK 3 T13: 0.0698 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 0.0577 L22: 0.0497 REMARK 3 L33: 0.2547 L12: 0.0349 REMARK 3 L13: 0.0230 L23: -0.0557 REMARK 3 S TENSOR REMARK 3 S11: 0.0690 S12: 0.0362 S13: -0.0123 REMARK 3 S21: -0.0133 S22: 0.0766 S23: 0.1040 REMARK 3 S31: 0.0648 S32: 0.0245 S33: 0.2149 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9527 26.8764 13.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.0651 REMARK 3 T33: 0.0747 T12: -0.0075 REMARK 3 T13: 0.0152 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.0320 L22: 0.2475 REMARK 3 L33: 0.0692 L12: -0.0087 REMARK 3 L13: -0.0332 L23: -0.0638 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.0584 S13: -0.0066 REMARK 3 S21: -0.1073 S22: 0.0258 S23: -0.0317 REMARK 3 S31: 0.0350 S32: 0.0246 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7755 24.6139 7.5726 REMARK 3 T TENSOR REMARK 3 T11: 0.0485 T22: 0.0037 REMARK 3 T33: 0.0325 T12: -0.0013 REMARK 3 T13: -0.0138 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.0754 L22: 0.2368 REMARK 3 L33: 0.0298 L12: -0.0830 REMARK 3 L13: 0.0134 L23: 0.0445 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0293 S13: -0.1125 REMARK 3 S21: 0.0877 S22: 0.0235 S23: 0.1680 REMARK 3 S31: 0.0692 S32: -0.0123 S33: 0.0250 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4IFU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.8 M SODIUM ACETATE, 0.1 M REMARK 280 NACL, 20% (W/V) ETHYLENE GLYCOL;, PH 6.5, HANGING-DROP VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.41450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.62600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.41450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.62600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 114 REMARK 465 ALA A 115 REMARK 465 ASP A 201 REMARK 465 VAL A 202 REMARK 465 ARG A 203 REMARK 465 SER A 204 REMARK 465 ALA A 205 REMARK 465 ALA A 206 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 284 O HOH A 602 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 55 76.77 65.49 REMARK 500 ARG A 56 -52.93 -146.11 REMARK 500 ASP A 57 -44.92 92.53 REMARK 500 SER A 70 -155.82 -132.55 REMARK 500 GLN A 208 -79.37 71.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 162 O REMARK 620 2 ASP A 284 OD1 77.8 REMARK 620 3 ASP A 284 O 86.8 81.6 REMARK 620 4 THR A 288 OG1 108.9 173.2 97.4 REMARK 620 5 ADP A 501 O1A 93.5 89.4 170.8 91.3 REMARK 620 6 HOH A 601 O 156.5 80.3 98.1 93.3 78.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 284 OD1 REMARK 620 2 ASP A 284 OD2 57.0 REMARK 620 3 ADP A 501 O3B 148.6 149.6 REMARK 620 4 ADP A 501 O1A 87.3 119.0 65.1 REMARK 620 5 HOH A 602 O 105.6 52.8 96.7 106.1 REMARK 620 6 HOH A 604 O 100.8 85.3 98.8 154.2 95.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 DBREF 4IFW A 1 340 UNP O83774 APBE_TREPA 23 362 SEQRES 1 A 340 CYS GLY GLY ARG ALA ARG VAL ARG GLU TYR SER ARG ALA SEQRES 2 A 340 GLU LEU VAL ILE GLY THR LEU CYS ARG VAL ARG VAL TYR SEQRES 3 A 340 SER LYS ARG PRO ALA ALA GLU VAL HIS ALA ALA LEU GLU SEQRES 4 A 340 GLU VAL PHE THR LEU LEU GLN GLN GLN GLU MET VAL LEU SEQRES 5 A 340 SER ALA ASN ARG ASP ASP SER ALA LEU ALA ALA LEU ASN SEQRES 6 A 340 ALA GLN ALA GLY SER ALA PRO VAL VAL VAL ASP ARG SER SEQRES 7 A 340 LEU TYR ALA LEU LEU GLU ARG ALA LEU PHE PHE ALA GLU SEQRES 8 A 340 LYS SER GLY GLY ALA PHE ASN PRO ALA LEU GLY ALA VAL SEQRES 9 A 340 VAL LYS LEU TRP ASN ILE GLY PHE ASP ARG ALA ALA VAL SEQRES 10 A 340 PRO ASP PRO ASP ALA LEU LYS GLU ALA LEU THR ARG CYS SEQRES 11 A 340 ASP PHE ARG GLN VAL HIS LEU ARG ALA GLY VAL SER VAL SEQRES 12 A 340 GLY ALA PRO HIS THR VAL GLN LEU ALA GLN ALA GLY MET SEQRES 13 A 340 GLN LEU ASP LEU GLY ALA ILE ALA LYS GLY PHE LEU ALA SEQRES 14 A 340 ASP LYS ILE VAL GLN LEU LEU THR ALA HIS ALA LEU ASP SEQRES 15 A 340 SER ALA LEU VAL ASP LEU GLY GLY ASN ILE PHE ALA LEU SEQRES 16 A 340 GLY LEU LYS TYR GLY ASP VAL ARG SER ALA ALA ALA GLN SEQRES 17 A 340 ARG LEU GLU TRP ASN VAL GLY ILE ARG ASP PRO HIS GLY SEQRES 18 A 340 THR GLY GLN LYS PRO ALA LEU VAL VAL SER VAL ARG ASP SEQRES 19 A 340 CYS SER VAL VAL THR SER GLY ALA TYR GLU ARG PHE PHE SEQRES 20 A 340 GLU ARG ASP GLY VAL ARG TYR HIS HIS ILE ILE ASP PRO SEQRES 21 A 340 VAL THR GLY PHE PRO ALA HIS THR ASP VAL ASP SER VAL SEQRES 22 A 340 SER ILE PHE ALA PRO ARG SER THR ASP ALA ASP ALA LEU SEQRES 23 A 340 ALA THR ALA CYS PHE VAL LEU GLY TYR GLU LYS SER CYS SEQRES 24 A 340 ALA LEU LEU ARG GLU PHE PRO GLY VAL ASP ALA LEU PHE SEQRES 25 A 340 ILE PHE PRO ASP LYS ARG VAL ARG ALA SER ALA GLY ILE SEQRES 26 A 340 VAL ASP ARG VAL ARG VAL LEU ASP ALA ARG PHE VAL LEU SEQRES 27 A 340 GLU ARG HET ADP A 501 39 HET MG A 502 1 HET MG A 503 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *158(H2 O) HELIX 1 1 PRO A 30 SER A 53 1 24 HELIX 2 2 SER A 59 ALA A 66 1 8 HELIX 3 3 ASP A 76 SER A 93 1 18 HELIX 4 4 LEU A 101 ASP A 113 1 13 HELIX 5 5 ASP A 119 THR A 128 1 10 HELIX 6 6 ARG A 129 CYS A 130 5 2 HELIX 7 7 ASP A 131 ARG A 133 5 3 HELIX 8 8 ILE A 163 HIS A 179 1 17 HELIX 9 9 ARG A 279 GLY A 294 1 16 HELIX 10 10 GLY A 294 ARG A 303 1 10 HELIX 11 11 SER A 322 ASP A 327 1 6 SHEET 1 A 9 ARG A 8 VAL A 16 0 SHEET 2 A 9 THR A 19 SER A 27 -1 O VAL A 25 N TYR A 10 SHEET 3 A 9 ALA A 184 LEU A 188 -1 O ASP A 187 N ARG A 22 SHEET 4 A 9 ASN A 191 LEU A 195 -1 O PHE A 193 N VAL A 186 SHEET 5 A 9 CYS A 235 GLY A 241 -1 O CYS A 235 N ALA A 194 SHEET 6 A 9 SER A 272 ALA A 277 -1 O ALA A 277 N SER A 236 SHEET 7 A 9 ASP A 309 ILE A 313 -1 O ASP A 309 N PHE A 276 SHEET 8 A 9 ARG A 318 ALA A 321 -1 O ARG A 320 N PHE A 312 SHEET 9 A 9 VAL A 337 LEU A 338 1 O VAL A 337 N VAL A 319 SHEET 1 B 3 VAL A 73 VAL A 75 0 SHEET 2 B 3 HIS A 147 LEU A 151 -1 O HIS A 147 N VAL A 75 SHEET 3 B 3 VAL A 135 ALA A 139 -1 N HIS A 136 O GLN A 150 SHEET 1 C 2 LYS A 198 TYR A 199 0 SHEET 2 C 2 ARG A 209 LEU A 210 -1 O LEU A 210 N LYS A 198 SHEET 1 D 3 TRP A 212 ARG A 217 0 SHEET 2 D 3 PRO A 226 VAL A 232 -1 O VAL A 230 N VAL A 214 SHEET 3 D 3 VAL A 329 VAL A 331 -1 O ARG A 330 N VAL A 229 SHEET 1 E 2 PHE A 246 ARG A 249 0 SHEET 2 E 2 VAL A 252 HIS A 255 -1 O TYR A 254 N PHE A 247 LINK O ALA A 162 MG MG A 502 1555 1555 2.41 LINK OD1 ASP A 284 MG MG A 502 1555 1555 2.08 LINK O ASP A 284 MG MG A 502 1555 1555 2.12 LINK OD1 ASP A 284 MG MG A 503 1555 1555 2.07 LINK OD2 ASP A 284 MG MG A 503 1555 1555 2.43 LINK OG1 THR A 288 MG MG A 502 1555 1555 2.23 LINK O1A ADP A 501 MG MG A 502 1555 1555 2.34 LINK O3B ADP A 501 MG MG A 503 1555 1555 2.13 LINK O1A ADP A 501 MG MG A 503 1555 1555 2.42 LINK MG MG A 502 O HOH A 601 1555 1555 2.07 LINK MG MG A 503 O HOH A 602 1555 1555 2.10 LINK MG MG A 503 O HOH A 604 1555 1555 2.07 SITE 1 AC1 22 ALA A 96 PHE A 97 ASN A 98 LEU A 101 SITE 2 AC1 22 VAL A 105 ASP A 159 GLY A 161 ALA A 162 SITE 3 AC1 22 LYS A 165 SER A 240 GLU A 244 HIS A 256 SITE 4 AC1 22 ILE A 257 ILE A 258 ASP A 284 THR A 288 SITE 5 AC1 22 MG A 502 MG A 503 HOH A 601 HOH A 603 SITE 6 AC1 22 HOH A 619 HOH A 753 SITE 1 AC2 6 ALA A 162 ASP A 284 THR A 288 ADP A 501 SITE 2 AC2 6 MG A 503 HOH A 601 SITE 1 AC3 5 ASP A 284 ADP A 501 MG A 502 HOH A 602 SITE 2 AC3 5 HOH A 604 CRYST1 116.829 47.252 57.643 90.00 102.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008560 0.000000 0.001824 0.00000 SCALE2 0.000000 0.021163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017738 0.00000