HEADER HYDROLASE/SIGNALING PROTEIN 16-DEC-12 4IG7 TITLE CRYSTAL STRUCTURE OF TRICHINELLA SPIRALIS UCH37 BOUND TO UBIQUITIN TITLE 2 VINYL METHYL ESTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN C-TERMINAL HYDROLASE 37; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHINELLA SPIRALIS; SOURCE 3 ORGANISM_TAXID: 6334; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A(+); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: UBC; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS HELIX-BETA-HELIX SANDWICH, DEUBIQUITINATION, UBIQUITIN C-TERMINAL KEYWDS 2 HYDROLASE, CYTOSOL, HYDROLASE-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.DAS,M.I.KIM,M.E.MORROW REVDAT 4 15-NOV-23 4IG7 1 LINK ATOM REVDAT 3 20-SEP-23 4IG7 1 REMARK LINK REVDAT 2 15-JAN-14 4IG7 1 JRNL REVDAT 1 29-MAY-13 4IG7 0 JRNL AUTH M.E.MORROW,M.-I.KIM,J.A.RONAU,M.J.SHEEDLO,R.R.WHITE, JRNL AUTH 2 J.CHANEY,L.N.PAUL,M.A.LILL,K.ARTAVANIS-TSAKONAS,C.DAS JRNL TITL STABILIZATION OF AN UNUSUAL SALT BRIDGE IN UBIQUITIN BY THE JRNL TITL 2 EXTRA C‑TERMINAL DOMAIN OF THE PROTEASOME-ASSOCIATED JRNL TITL 3 DEUBIQUITINASE UCH37 AS A MECHANISM OF ITS EXO JRNL TITL 4 SPECIfiCITY. JRNL REF BIOCHEMISTRY V. 52 3564 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23617878 JRNL DOI 10.1021/BI4003106 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5969 - 3.9905 1.00 2662 119 0.1763 0.1935 REMARK 3 2 3.9905 - 3.1678 1.00 2640 152 0.1771 0.2381 REMARK 3 3 3.1678 - 2.7675 1.00 2653 138 0.2027 0.2610 REMARK 3 4 2.7675 - 2.5145 1.00 2650 136 0.2024 0.2430 REMARK 3 5 2.5145 - 2.3343 1.00 2616 166 0.2153 0.2902 REMARK 3 6 2.3343 - 2.1967 1.00 2639 149 0.2072 0.2595 REMARK 3 7 2.1967 - 2.0867 1.00 2640 152 0.2251 0.2955 REMARK 3 8 2.0867 - 1.9959 0.99 2629 129 0.2517 0.2660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2477 REMARK 3 ANGLE : 1.143 3345 REMARK 3 CHIRALITY : 0.081 378 REMARK 3 PLANARITY : 0.004 431 REMARK 3 DIHEDRAL : 15.933 922 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 7 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22270 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.996 REMARK 200 RESOLUTION RANGE LOW (A) : 38.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4I6N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CHLORIDE, 18% PEG3350, REMARK 280 PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.68050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.53946 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.49500 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 73.68050 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 42.53946 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.49500 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 73.68050 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 42.53946 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.49500 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.07891 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.99000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 85.07891 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.99000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 85.07891 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.99000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 480 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 58 REMARK 465 GLU A 59 REMARK 465 MET A 60 REMARK 465 ARG A 61 REMARK 465 LYS A 62 REMARK 465 GLU A 63 REMARK 465 VAL A 64 REMARK 465 ASP A 65 REMARK 465 ASP A 66 REMARK 465 SER A 67 REMARK 465 PRO A 68 REMARK 465 GLN A 69 REMARK 465 THR A 70 REMARK 465 CYS A 71 REMARK 465 ARG A 142 REMARK 465 GLN A 143 REMARK 465 GLN A 144 REMARK 465 LEU A 145 REMARK 465 PHE A 146 REMARK 465 GLU A 147 REMARK 465 ILE A 148 REMARK 465 ASP A 149 REMARK 465 ASP A 150 REMARK 465 GLN A 151 REMARK 465 GLN A 152 REMARK 465 LYS A 153 REMARK 465 LEU A 154 REMARK 465 ASP A 155 REMARK 465 GLU A 156 REMARK 465 MET A 264 REMARK 465 GLU A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 267 REMARK 465 ARG A 268 REMARK 465 HIS A 269 REMARK 465 ARG A 270 REMARK 465 HIS A 271 REMARK 465 ASN A 272 REMARK 465 TYR A 273 REMARK 465 VAL A 274 REMARK 465 PRO A 275 REMARK 465 PHE A 276 REMARK 465 ILE A 277 REMARK 465 VAL A 278 REMARK 465 GLU A 279 REMARK 465 LEU A 280 REMARK 465 LEU A 281 REMARK 465 ARG A 282 REMARK 465 ILE A 283 REMARK 465 LEU A 284 REMARK 465 ALA A 285 REMARK 465 GLU A 286 REMARK 465 GLU A 287 REMARK 465 GLU A 288 REMARK 465 VAL A 289 REMARK 465 LEU A 290 REMARK 465 SER A 291 REMARK 465 ARG A 292 REMARK 465 MET A 293 REMARK 465 LEU A 294 REMARK 465 ALA A 295 REMARK 465 ASP A 296 REMARK 465 VAL A 297 REMARK 465 SER A 298 REMARK 465 ASP A 299 REMARK 465 SER A 300 REMARK 465 ASN A 301 REMARK 465 VAL A 302 REMARK 465 ALA A 303 REMARK 465 HIS A 304 REMARK 465 ASP A 305 REMARK 465 PHE A 306 REMARK 465 VAL A 307 REMARK 465 PHE A 308 REMARK 465 GLU A 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 75 N GVE B 101 2.16 REMARK 500 O GLU B 64 O HOH B 209 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 169 -121.41 49.48 REMARK 500 ALA A 189 171.13 74.09 REMARK 500 ASN A 208 -11.84 -174.89 REMARK 500 GLU A 211 -8.13 -54.08 REMARK 500 ALA B 46 99.38 -36.24 REMARK 500 ARG B 54 35.71 -146.36 REMARK 500 THR B 55 134.22 49.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GVE B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IHR RELATED DB: PDB REMARK 900 STRUCTURE OF FULL-LENGTH, HUMAN PROTEIN DBREF 4IG7 A -33 309 PDB 4IG7 4IG7 -33 309 DBREF 4IG7 B 1 75 UNP P0CG48 UBC_HUMAN 1 75 SEQRES 1 A 343 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 343 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 343 GLY GLN GLN MET GLY ARG GLY SER MET ALA GLU GLY ASN SEQRES 4 A 343 TRP CYS LEU ILE GLU SER ASP PRO GLY ILE PHE THR GLU SEQRES 5 A 343 MET ILE HIS GLY PHE GLY CYS THR GLY LEU GLN VAL GLU SEQRES 6 A 343 GLU LEU VAL VAL LEU ASP GLU SER ILE GLU HIS LEU LYS SEQRES 7 A 343 PRO ILE HIS GLY PHE ILE PHE LEU PHE ARG TRP LEU LYS SEQRES 8 A 343 LYS GLU MET ARG LYS GLU VAL ASP ASP SER PRO GLN THR SEQRES 9 A 343 CYS THR ASP VAL TYR PHE SER GLN GLN VAL ILE GLN ASN SEQRES 10 A 343 ALA CYS ALA SER GLN ALA LEU ILE ASN LEU LEU LEU ASN SEQRES 11 A 343 CYS ASP HIS PRO ASP VAL ASP LEU GLY PRO THR LEU LYS SEQRES 12 A 343 GLU PHE LYS ASP PHE THR TYR ASP LEU ASP SER ALA SER SEQRES 13 A 343 ARG GLY LEU CYS LEU THR ASN SER GLU LYS ILE ARG ALA SEQRES 14 A 343 VAL HIS ASN SER PHE GLY ARG GLN GLN LEU PHE GLU ILE SEQRES 15 A 343 ASP ASP GLN GLN LYS LEU ASP GLU GLU ASP VAL PHE HIS SEQRES 16 A 343 PHE VAL THR TYR VAL PRO VAL ASN ASP GLY VAL TYR GLU SEQRES 17 A 343 LEU ASP GLY LEU ARG ALA ALA PRO LEU ARG LEU GLY THR SEQRES 18 A 343 VAL ALA SER ASP GLY ASP TRP THR GLU VAL ALA ILE LYS SEQRES 19 A 343 ALA ILE LYS GLU LYS ILE LYS ASN TYR GLY GLU SER GLU SEQRES 20 A 343 VAL ARG PHE ASN LEU MET ALA VAL ILE SER ASP GLN LYS SEQRES 21 A 343 LEU LYS TYR GLU ARG GLU MET GLU LYS PHE ALA GLN ALA SEQRES 22 A 343 GLY ASP SER ALA GLU VAL ASP ARG LEU VAL ALA LEU ILE SEQRES 23 A 343 ALA ALA GLU ASP ALA LYS ARG GLU ARG TYR ALA MET GLU SEQRES 24 A 343 ALA ALA ARG HIS ARG HIS ASN TYR VAL PRO PHE ILE VAL SEQRES 25 A 343 GLU LEU LEU ARG ILE LEU ALA GLU GLU GLU VAL LEU SER SEQRES 26 A 343 ARG MET LEU ALA ASP VAL SER ASP SER ASN VAL ALA HIS SEQRES 27 A 343 ASP PHE VAL PHE GLU SEQRES 1 B 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY HET GVE B 101 8 HETNAM GVE METHYL 4-AMINOBUTANOATE FORMUL 3 GVE C5 H11 N O2 FORMUL 4 HOH *100(H2 O) HELIX 1 1 ASP A 12 PHE A 23 1 12 HELIX 2 2 ILE A 40 LYS A 44 5 5 HELIX 3 3 ILE A 81 ASN A 83 5 3 HELIX 4 4 ALA A 84 LEU A 95 1 12 HELIX 5 5 GLY A 105 THR A 115 1 11 HELIX 6 6 ASP A 119 SER A 130 1 12 HELIX 7 7 SER A 130 SER A 139 1 10 HELIX 8 8 ASP A 193 LYS A 207 1 15 HELIX 9 9 ASP A 224 GLY A 240 1 17 HELIX 10 10 ASP A 241 TYR A 262 1 22 HELIX 11 11 THR B 22 GLY B 35 1 14 HELIX 12 12 PRO B 37 ASP B 39 5 3 SHEET 1 A 2 ILE A 9 GLU A 10 0 SHEET 2 A 2 ARG B 74 GLY B 75 -1 O GLY B 75 N ILE A 9 SHEET 1 B 6 LEU A 28 LEU A 33 0 SHEET 2 B 6 ASN A 217 SER A 223 -1 O LEU A 218 N LEU A 33 SHEET 3 B 6 ILE A 46 ARG A 54 -1 N ILE A 50 O MET A 219 SHEET 4 B 6 PHE A 160 VAL A 168 -1 O VAL A 163 N PHE A 51 SHEET 5 B 6 GLY A 171 LEU A 175 -1 O LEU A 175 N THR A 164 SHEET 6 B 6 LEU A 183 THR A 187 -1 O LEU A 185 N VAL A 172 SHEET 1 C 5 THR B 12 GLU B 16 0 SHEET 2 C 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 C 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 C 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 C 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK C GLY B 75 N GVE B 101 1555 1555 1.34 CISPEP 1 LYS A 44 PRO A 45 0 -1.00 CISPEP 2 ALA A 189 SER A 190 0 7.56 CISPEP 3 ALA B 46 GLY B 47 0 -1.16 SITE 1 AC1 10 LEU A 8 TRP A 55 GLN A 79 GLN A 82 SITE 2 AC1 10 CYS A 85 VAL A 159 PHE A 160 HIS A 161 SITE 3 AC1 10 LEU A 178 GLY B 75 CRYST1 147.361 147.361 40.485 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006786 0.003918 0.000000 0.00000 SCALE2 0.000000 0.007836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024701 0.00000