HEADER ALLERGEN 18-DEC-12 4IGY TITLE CRYSTAL STRUCTURE OF KIROLA (ACT D 11) - TRICLINIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIROLA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ACT D 11 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINIDIA DELICIOSA; SOURCE 3 ORGANISM_COMMON: CHINESE GOOSEBERRY,KIWIFRUIT; SOURCE 4 ORGANISM_TAXID: 3627 KEYWDS MLP/RRP FAMILY, PR-10 RELATED, ALLERGEN EXPDTA X-RAY DIFFRACTION AUTHOR M.CHRUSZCZ,M.A.CIARDIELLO,I.GIANGRIECO,T.OSINSKI,W.MINOR REVDAT 3 20-SEP-23 4IGY 1 REMARK REVDAT 2 13-APR-22 4IGY 1 AUTHOR JRNL REMARK REVDAT 1 04-SEP-13 4IGY 0 JRNL AUTH M.CHRUSZCZ,M.A.CIARDIELLO,T.OSINSKI,K.A.MAJOREK, JRNL AUTH 2 I.GIANGRIECO,J.FONT,H.BREITENEDER,K.THALASSINOS,W.MINOR JRNL TITL STRUCTURAL AND BIOINFORMATIC ANALYSIS OF THE KIWIFRUIT JRNL TITL 2 ALLERGEN ACT D 11, A MEMBER OF THE FAMILY OF JRNL TITL 3 RIPENING-RELATED PROTEINS. JRNL REF MOL.IMMUNOL. V. 56 794 2013 JRNL REFN ISSN 0161-5890 JRNL PMID 23969108 JRNL DOI 10.1016/J.MOLIMM.2013.07.004 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 13275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 695 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 937 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.75000 REMARK 3 B22 (A**2) : -1.26000 REMARK 3 B33 (A**2) : 3.90000 REMARK 3 B12 (A**2) : 0.73000 REMARK 3 B13 (A**2) : 2.36000 REMARK 3 B23 (A**2) : -1.10000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.466 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4888 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3229 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6607 ; 1.393 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7957 ; 4.136 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 585 ; 5.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;33.689 ;25.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 918 ;15.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.347 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 762 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5303 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 945 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2913 ; 0.953 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1202 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4774 ; 1.820 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1975 ; 1.850 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1833 ; 3.436 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 150 1 REMARK 3 1 B 1 B 150 1 REMARK 3 1 C 1 C 150 1 REMARK 3 1 D 1 D 150 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1997 ; 0.14 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 1997 ; 0.15 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 1997 ; 0.14 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 1997 ; 0.15 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1997 ; 0.07 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 1997 ; 0.06 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 1997 ; 0.06 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 1997 ; 0.06 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6200 -0.0360 0.2710 REMARK 3 T TENSOR REMARK 3 T11: 0.3516 T22: 0.2461 REMARK 3 T33: 0.0882 T12: 0.1108 REMARK 3 T13: -0.1658 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.7254 L22: 2.9999 REMARK 3 L33: 2.2595 L12: -0.0240 REMARK 3 L13: -0.3554 L23: -0.2975 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.1290 S13: 0.0576 REMARK 3 S21: 0.2163 S22: 0.0195 S23: -0.1183 REMARK 3 S31: 0.0148 S32: 0.0620 S33: -0.0272 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 148 REMARK 3 ORIGIN FOR THE GROUP (A): -32.1550 -22.7170 -3.8670 REMARK 3 T TENSOR REMARK 3 T11: 0.3413 T22: 0.1897 REMARK 3 T33: 0.1621 T12: 0.1245 REMARK 3 T13: -0.1284 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 2.4138 L22: 3.0674 REMARK 3 L33: 1.9456 L12: 0.3910 REMARK 3 L13: -0.5153 L23: -0.4096 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.0183 S13: 0.0017 REMARK 3 S21: 0.2111 S22: 0.0428 S23: -0.1807 REMARK 3 S31: -0.0247 S32: -0.0336 S33: -0.0866 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 148 REMARK 3 ORIGIN FOR THE GROUP (A): -50.7060 -34.5810 -26.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.3543 T22: 0.2347 REMARK 3 T33: 0.0984 T12: 0.1241 REMARK 3 T13: -0.1669 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.2027 L22: 2.6828 REMARK 3 L33: 2.1416 L12: -0.2119 REMARK 3 L13: -0.4184 L23: 0.1503 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: 0.2760 S13: -0.0651 REMARK 3 S21: -0.0440 S22: -0.0549 S23: 0.0072 REMARK 3 S31: -0.0952 S32: -0.0479 S33: 0.0064 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 148 REMARK 3 ORIGIN FOR THE GROUP (A): -28.5340 -53.7350 -30.9850 REMARK 3 T TENSOR REMARK 3 T11: 0.4278 T22: 0.2809 REMARK 3 T33: 0.1317 T12: 0.1470 REMARK 3 T13: -0.1402 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.0636 L22: 2.0334 REMARK 3 L33: 2.1609 L12: 0.3328 REMARK 3 L13: -0.2923 L23: -0.1227 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: 0.3992 S13: -0.0199 REMARK 3 S21: -0.2446 S22: -0.0104 S23: 0.0125 REMARK 3 S31: 0.1893 S32: 0.0002 S33: -0.0042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4IGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : 0.29800 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4IGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M CITRIC ACID, 0.35 M MAGNESIUM REMARK 280 CHLORIDE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 150 REMARK 465 MET B 1 REMARK 465 LEU B 149 REMARK 465 LYS B 150 REMARK 465 MET C 1 REMARK 465 LEU C 149 REMARK 465 LYS C 150 REMARK 465 MET D 1 REMARK 465 LEU D 149 REMARK 465 LYS D 150 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LYS C 108 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 -175.12 -63.42 REMARK 500 TYR A 26 -70.20 -92.62 REMARK 500 TYR A 147 118.71 -38.29 REMARK 500 HIS A 148 77.39 51.41 REMARK 500 SER B 15 -176.66 -63.31 REMARK 500 TYR B 26 -70.81 -92.71 REMARK 500 PRO B 130 41.83 -73.61 REMARK 500 TYR B 147 117.70 -38.76 REMARK 500 SER C 15 -177.23 -65.25 REMARK 500 TYR C 26 -69.14 -93.13 REMARK 500 PHE C 99 115.49 -160.66 REMARK 500 PRO C 130 44.78 -74.79 REMARK 500 SER D 15 -177.33 -64.97 REMARK 500 ARG D 25 -71.32 -71.19 REMARK 500 TYR D 26 -70.74 -91.09 REMARK 500 PRO D 130 41.00 -72.38 REMARK 500 TYR D 147 117.85 -36.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IGV RELATED DB: PDB REMARK 900 RELATED ID: 4IGW RELATED DB: PDB REMARK 900 RELATED ID: 4IGX RELATED DB: PDB REMARK 900 RELATED ID: 4IH0 RELATED DB: PDB REMARK 900 RELATED ID: 4IH2 RELATED DB: PDB REMARK 900 RELATED ID: 4IHR RELATED DB: PDB DBREF 4IGY A 1 150 UNP P85524 KIRO_ACTDE 1 150 DBREF 4IGY B 1 150 UNP P85524 KIRO_ACTDE 1 150 DBREF 4IGY C 1 150 UNP P85524 KIRO_ACTDE 1 150 DBREF 4IGY D 1 150 UNP P85524 KIRO_ACTDE 1 150 SEQRES 1 A 150 MET ASP LEU SER GLY LYS MET VAL LYS GLN VAL GLU ILE SEQRES 2 A 150 LEU SER ASP GLY ILE VAL PHE TYR GLU ILE PHE ARG TYR SEQRES 3 A 150 ARG LEU TYR LEU ILE SER GLU MET SER PRO VAL ASN ILE SEQRES 4 A 150 GLN GLY VAL ASP LEU LEU GLU GLY ASN TRP GLY THR VAL SEQRES 5 A 150 GLY SER VAL ILE PHE PHE LYS TYR THR ILE ASP GLY LYS SEQRES 6 A 150 GLU LYS THR ALA LYS ASP ILE VAL GLU ALA ILE ASP GLU SEQRES 7 A 150 GLU THR LYS SER VAL THR PHE LYS ILE VAL GLU GLY ASP SEQRES 8 A 150 LEU MET GLU LEU TYR LYS THR PHE ILE ILE ILE VAL GLN SEQRES 9 A 150 VAL ASP THR LYS GLY GLU HIS ASN SER VAL THR TRP THR SEQRES 10 A 150 PHE HIS TYR GLU LYS LEU LYS GLU ASP VAL GLU GLU PRO SEQRES 11 A 150 ASN THR LEU MET ASN PHE CYS ILE GLU ILE THR LYS ASP SEQRES 12 A 150 ILE GLU THR TYR HIS LEU LYS SEQRES 1 B 150 MET ASP LEU SER GLY LYS MET VAL LYS GLN VAL GLU ILE SEQRES 2 B 150 LEU SER ASP GLY ILE VAL PHE TYR GLU ILE PHE ARG TYR SEQRES 3 B 150 ARG LEU TYR LEU ILE SER GLU MET SER PRO VAL ASN ILE SEQRES 4 B 150 GLN GLY VAL ASP LEU LEU GLU GLY ASN TRP GLY THR VAL SEQRES 5 B 150 GLY SER VAL ILE PHE PHE LYS TYR THR ILE ASP GLY LYS SEQRES 6 B 150 GLU LYS THR ALA LYS ASP ILE VAL GLU ALA ILE ASP GLU SEQRES 7 B 150 GLU THR LYS SER VAL THR PHE LYS ILE VAL GLU GLY ASP SEQRES 8 B 150 LEU MET GLU LEU TYR LYS THR PHE ILE ILE ILE VAL GLN SEQRES 9 B 150 VAL ASP THR LYS GLY GLU HIS ASN SER VAL THR TRP THR SEQRES 10 B 150 PHE HIS TYR GLU LYS LEU LYS GLU ASP VAL GLU GLU PRO SEQRES 11 B 150 ASN THR LEU MET ASN PHE CYS ILE GLU ILE THR LYS ASP SEQRES 12 B 150 ILE GLU THR TYR HIS LEU LYS SEQRES 1 C 150 MET ASP LEU SER GLY LYS MET VAL LYS GLN VAL GLU ILE SEQRES 2 C 150 LEU SER ASP GLY ILE VAL PHE TYR GLU ILE PHE ARG TYR SEQRES 3 C 150 ARG LEU TYR LEU ILE SER GLU MET SER PRO VAL ASN ILE SEQRES 4 C 150 GLN GLY VAL ASP LEU LEU GLU GLY ASN TRP GLY THR VAL SEQRES 5 C 150 GLY SER VAL ILE PHE PHE LYS TYR THR ILE ASP GLY LYS SEQRES 6 C 150 GLU LYS THR ALA LYS ASP ILE VAL GLU ALA ILE ASP GLU SEQRES 7 C 150 GLU THR LYS SER VAL THR PHE LYS ILE VAL GLU GLY ASP SEQRES 8 C 150 LEU MET GLU LEU TYR LYS THR PHE ILE ILE ILE VAL GLN SEQRES 9 C 150 VAL ASP THR LYS GLY GLU HIS ASN SER VAL THR TRP THR SEQRES 10 C 150 PHE HIS TYR GLU LYS LEU LYS GLU ASP VAL GLU GLU PRO SEQRES 11 C 150 ASN THR LEU MET ASN PHE CYS ILE GLU ILE THR LYS ASP SEQRES 12 C 150 ILE GLU THR TYR HIS LEU LYS SEQRES 1 D 150 MET ASP LEU SER GLY LYS MET VAL LYS GLN VAL GLU ILE SEQRES 2 D 150 LEU SER ASP GLY ILE VAL PHE TYR GLU ILE PHE ARG TYR SEQRES 3 D 150 ARG LEU TYR LEU ILE SER GLU MET SER PRO VAL ASN ILE SEQRES 4 D 150 GLN GLY VAL ASP LEU LEU GLU GLY ASN TRP GLY THR VAL SEQRES 5 D 150 GLY SER VAL ILE PHE PHE LYS TYR THR ILE ASP GLY LYS SEQRES 6 D 150 GLU LYS THR ALA LYS ASP ILE VAL GLU ALA ILE ASP GLU SEQRES 7 D 150 GLU THR LYS SER VAL THR PHE LYS ILE VAL GLU GLY ASP SEQRES 8 D 150 LEU MET GLU LEU TYR LYS THR PHE ILE ILE ILE VAL GLN SEQRES 9 D 150 VAL ASP THR LYS GLY GLU HIS ASN SER VAL THR TRP THR SEQRES 10 D 150 PHE HIS TYR GLU LYS LEU LYS GLU ASP VAL GLU GLU PRO SEQRES 11 D 150 ASN THR LEU MET ASN PHE CYS ILE GLU ILE THR LYS ASP SEQRES 12 D 150 ILE GLU THR TYR HIS LEU LYS HET UNL A 201 1 HET UNL A 202 1 HET UNL B 201 1 HET UNL B 202 1 HET UNL C 201 1 HET UNL C 202 1 HET UNL C 203 1 HET CL C 204 1 HET UNL D 201 1 HET UNL D 202 1 HET UNL D 203 1 HETNAM UNL UNKNOWN LIGAND HETNAM CL CHLORIDE ION FORMUL 12 CL CL 1- FORMUL 16 HOH *32(H2 O) HELIX 1 1 ASP A 16 TYR A 26 1 11 HELIX 2 2 ARG A 27 TYR A 29 5 3 HELIX 3 3 LEU A 30 SER A 35 1 6 HELIX 4 4 LEU A 92 GLU A 94 5 3 HELIX 5 5 PRO A 130 TYR A 147 1 18 HELIX 6 6 ASP B 16 TYR B 26 1 11 HELIX 7 7 ARG B 27 TYR B 29 5 3 HELIX 8 8 LEU B 30 SER B 35 1 6 HELIX 9 9 LEU B 92 GLU B 94 5 3 HELIX 10 10 PRO B 130 TYR B 147 1 18 HELIX 11 11 ASP C 16 TYR C 26 1 11 HELIX 12 12 ARG C 27 TYR C 29 5 3 HELIX 13 13 LEU C 30 SER C 35 1 6 HELIX 14 14 LEU C 92 GLU C 94 5 3 HELIX 15 15 PRO C 130 TYR C 147 1 18 HELIX 16 16 ASP D 16 TYR D 26 1 11 HELIX 17 17 ARG D 27 TYR D 29 5 3 HELIX 18 18 LEU D 30 SER D 35 1 6 HELIX 19 19 LEU D 92 GLU D 94 5 3 HELIX 20 20 PRO D 130 TYR D 147 1 18 SHEET 1 A 7 SER A 4 ILE A 13 0 SHEET 2 A 7 ASN A 112 LYS A 122 -1 O TRP A 116 N LYS A 9 SHEET 3 A 7 TYR A 96 ASP A 106 -1 N ILE A 100 O HIS A 119 SHEET 4 A 7 SER A 82 GLY A 90 -1 N PHE A 85 O ILE A 101 SHEET 5 A 7 LYS A 65 ASP A 77 -1 N LYS A 70 O GLU A 89 SHEET 6 A 7 VAL A 55 ILE A 62 -1 N TYR A 60 O LYS A 67 SHEET 7 A 7 ILE A 39 GLU A 46 -1 N LEU A 45 O VAL A 55 SHEET 1 B10 SER B 4 ILE B 13 0 SHEET 2 B10 ASN B 112 LYS B 122 -1 O TRP B 116 N LYS B 9 SHEET 3 B10 TYR B 96 ASP B 106 -1 N ILE B 100 O HIS B 119 SHEET 4 B10 SER B 82 GLY B 90 -1 N PHE B 85 O ILE B 101 SHEET 5 B10 LYS B 65 ASP B 77 -1 N LYS B 70 O VAL B 88 SHEET 6 B10 LYS C 65 ASP C 77 -1 O ILE C 76 N ILE B 76 SHEET 7 B10 SER C 82 GLY C 90 -1 O GLU C 89 N LYS C 70 SHEET 8 B10 TYR C 96 ASP C 106 -1 O ILE C 101 N PHE C 85 SHEET 9 B10 ASN C 112 LYS C 122 -1 O THR C 115 N GLN C 104 SHEET 10 B10 SER C 4 ILE C 13 -1 N LYS C 9 O TRP C 116 SHEET 1 C 6 ILE B 39 GLU B 46 0 SHEET 2 C 6 VAL B 55 ILE B 62 -1 O VAL B 55 N LEU B 45 SHEET 3 C 6 LYS B 65 ASP B 77 -1 O LYS B 67 N TYR B 60 SHEET 4 C 6 LYS C 65 ASP C 77 -1 O ILE C 76 N ILE B 76 SHEET 5 C 6 VAL C 55 ILE C 62 -1 N TYR C 60 O LYS C 67 SHEET 6 C 6 ILE C 39 GLU C 46 -1 N GLY C 41 O LYS C 59 SHEET 1 D 7 SER D 4 ILE D 13 0 SHEET 2 D 7 ASN D 112 LYS D 122 -1 O TRP D 116 N LYS D 9 SHEET 3 D 7 TYR D 96 ASP D 106 -1 N ILE D 100 O HIS D 119 SHEET 4 D 7 SER D 82 GLY D 90 -1 N PHE D 85 O ILE D 101 SHEET 5 D 7 LYS D 65 ASP D 77 -1 N LYS D 70 O GLU D 89 SHEET 6 D 7 VAL D 55 ILE D 62 -1 N TYR D 60 O LYS D 67 SHEET 7 D 7 ILE D 39 GLU D 46 -1 N LEU D 45 O VAL D 55 SITE 1 AC1 4 THR B 51 VAL B 52 THR C 51 VAL C 52 CRYST1 56.144 56.094 64.949 66.34 85.37 65.24 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017811 -0.008214 0.002072 0.00000 SCALE2 0.000000 0.019632 -0.008723 0.00000 SCALE3 0.000000 0.000000 0.016903 0.00000