HEADER HYDROLASE 18-DEC-12 4IHA TITLE CRYSTAL STRUCTURE OF RICE DWARF14 (D14) IN COMPLEX WITH A GR24 TITLE 2 HYDROLYSIS INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DWARF 88 ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 51-318; COMPND 5 SYNONYM: HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED, COMPND 6 OS03G0203200 PROTEIN, CDNA CLONE J023064N24, FULL INSERT SEQUENCE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: D14, D88, LOC_OS03G10620, OS03G0203200; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET1 KEYWDS STRIGOLACTONE, GR24 HYDROLYSIS, ALPHA/BETA HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.E.ZHOU,L.-H.ZHAO,Z.-S.WU,W.YI,S.LI,Y.LI,Y.XU,T.-H.XU,Y.LIU,R.- AUTHOR 2 Z.CHEN,A.KOVACH,Y.KANG,L.HOU,Y.HE,C.ZHANG,K.MELCHER,H.E.XU REVDAT 4 30-OCT-24 4IHA 1 REMARK REVDAT 3 20-SEP-23 4IHA 1 REMARK LINK REVDAT 2 23-OCT-13 4IHA 1 JRNL REVDAT 1 23-JAN-13 4IHA 0 JRNL AUTH L.H.ZHAO,X.E.ZHOU,Z.S.WU,W.YI,Y.XU,S.LI,T.H.XU,Y.LIU, JRNL AUTH 2 R.Z.CHEN,A.KOVACH,Y.KANG,L.HOU,Y.HE,C.XIE,W.SONG,D.ZHONG, JRNL AUTH 3 Y.XU,Y.WANG,J.LI,C.ZHANG,K.MELCHER,H.E.XU JRNL TITL CRYSTAL STRUCTURES OF TWO PHYTOHORMONE SIGNAL-TRANSDUCING JRNL TITL 2 ALPHA / BETA HYDROLASES: KARRIKIN-SIGNALING KAI2 AND JRNL TITL 3 STRIGOLACTONE-SIGNALING DWARF14. JRNL REF CELL RES. V. 23 436 2013 JRNL REFN ISSN 1001-0602 JRNL PMID 23381136 JRNL DOI 10.1038/CR.2013.19 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 74248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5376 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4946 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 349 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.462 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4244 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2832 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5778 ; 1.461 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6840 ; 0.892 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 530 ; 5.119 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;27.997 ;22.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 652 ;12.446 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;14.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 668 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4754 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 924 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2664 ; 1.069 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1086 ; 0.289 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4280 ; 1.964 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1580 ; 2.867 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1498 ; 4.643 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4IHA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110233 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1WOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, MPD, PH 7.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.09400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.15750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.36450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.15750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.09400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.36450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO MOLECULES IN AN A.U. BUT NO SIGNIFICANT REMARK 300 INTERACTION INTERFACE BETWEEN THE TWO MOLECULES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 97 C VAL B 98 N 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 97 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 SER B 97 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 97 -108.75 56.44 REMARK 500 ARG A 125 124.05 -172.63 REMARK 500 ASN A 151 83.37 -155.57 REMARK 500 ALA A 253 55.29 -146.76 REMARK 500 SER B 97 -102.44 62.15 REMARK 500 ARG B 125 126.15 -173.69 REMARK 500 SER B 130 -74.56 -37.44 REMARK 500 ALA B 253 56.91 -142.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 97 -13.38 REMARK 500 SER B 97 -18.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OPL A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OPL B 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IH1 RELATED DB: PDB REMARK 900 RELATED ID: 4IH4 RELATED DB: PDB REMARK 900 RELATED ID: 4IH9 RELATED DB: PDB DBREF 4IHA A 1 268 UNP Q10QA5 Q10QA5_ORYSJ 51 318 DBREF 4IHA B 1 268 UNP Q10QA5 Q10QA5_ORYSJ 51 318 SEQRES 1 A 268 PRO SER GLY ALA LYS LEU LEU GLN ILE LEU ASN VAL ARG SEQRES 2 A 268 VAL VAL GLY SER GLY GLU ARG VAL VAL VAL LEU SER HIS SEQRES 3 A 268 GLY PHE GLY THR ASP GLN SER ALA TRP SER ARG VAL LEU SEQRES 4 A 268 PRO TYR LEU THR ARG ASP HIS ARG VAL VAL LEU TYR ASP SEQRES 5 A 268 LEU VAL CYS ALA GLY SER VAL ASN PRO ASP HIS PHE ASP SEQRES 6 A 268 PHE ARG ARG TYR ASP ASN LEU ASP ALA TYR VAL ASP ASP SEQRES 7 A 268 LEU LEU ALA ILE LEU ASP ALA LEU ARG ILE PRO ARG CYS SEQRES 8 A 268 ALA PHE VAL GLY HIS SER VAL SER ALA MET ILE GLY ILE SEQRES 9 A 268 LEU ALA SER ILE ARG ARG PRO ASP LEU PHE ALA LYS LEU SEQRES 10 A 268 VAL LEU ILE GLY ALA SER PRO ARG PHE LEU ASN ASP SER SEQRES 11 A 268 ASP TYR HIS GLY GLY PHE GLU LEU GLU GLU ILE GLN GLN SEQRES 12 A 268 VAL PHE ASP ALA MET GLY ALA ASN TYR SER ALA TRP ALA SEQRES 13 A 268 THR GLY TYR ALA PRO LEU ALA VAL GLY ALA ASP VAL PRO SEQRES 14 A 268 ALA ALA VAL GLN GLU PHE SER ARG THR LEU PHE ASN MET SEQRES 15 A 268 ARG PRO ASP ILE SER LEU HIS VAL CYS GLN THR VAL PHE SEQRES 16 A 268 LYS THR ASP LEU ARG GLY VAL LEU GLY MET VAL ARG ALA SEQRES 17 A 268 PRO CYS VAL VAL VAL GLN THR THR ARG ASP VAL SER VAL SEQRES 18 A 268 PRO ALA SER VAL ALA ALA TYR LEU LYS ALA HIS LEU GLY SEQRES 19 A 268 GLY ARG THR THR VAL GLU PHE LEU GLN THR GLU GLY HIS SEQRES 20 A 268 LEU PRO HIS LEU SER ALA PRO SER LEU LEU ALA GLN VAL SEQRES 21 A 268 LEU ARG ARG ALA LEU ALA ARG TYR SEQRES 1 B 268 PRO SER GLY ALA LYS LEU LEU GLN ILE LEU ASN VAL ARG SEQRES 2 B 268 VAL VAL GLY SER GLY GLU ARG VAL VAL VAL LEU SER HIS SEQRES 3 B 268 GLY PHE GLY THR ASP GLN SER ALA TRP SER ARG VAL LEU SEQRES 4 B 268 PRO TYR LEU THR ARG ASP HIS ARG VAL VAL LEU TYR ASP SEQRES 5 B 268 LEU VAL CYS ALA GLY SER VAL ASN PRO ASP HIS PHE ASP SEQRES 6 B 268 PHE ARG ARG TYR ASP ASN LEU ASP ALA TYR VAL ASP ASP SEQRES 7 B 268 LEU LEU ALA ILE LEU ASP ALA LEU ARG ILE PRO ARG CYS SEQRES 8 B 268 ALA PHE VAL GLY HIS SER VAL SER ALA MET ILE GLY ILE SEQRES 9 B 268 LEU ALA SER ILE ARG ARG PRO ASP LEU PHE ALA LYS LEU SEQRES 10 B 268 VAL LEU ILE GLY ALA SER PRO ARG PHE LEU ASN ASP SER SEQRES 11 B 268 ASP TYR HIS GLY GLY PHE GLU LEU GLU GLU ILE GLN GLN SEQRES 12 B 268 VAL PHE ASP ALA MET GLY ALA ASN TYR SER ALA TRP ALA SEQRES 13 B 268 THR GLY TYR ALA PRO LEU ALA VAL GLY ALA ASP VAL PRO SEQRES 14 B 268 ALA ALA VAL GLN GLU PHE SER ARG THR LEU PHE ASN MET SEQRES 15 B 268 ARG PRO ASP ILE SER LEU HIS VAL CYS GLN THR VAL PHE SEQRES 16 B 268 LYS THR ASP LEU ARG GLY VAL LEU GLY MET VAL ARG ALA SEQRES 17 B 268 PRO CYS VAL VAL VAL GLN THR THR ARG ASP VAL SER VAL SEQRES 18 B 268 PRO ALA SER VAL ALA ALA TYR LEU LYS ALA HIS LEU GLY SEQRES 19 B 268 GLY ARG THR THR VAL GLU PHE LEU GLN THR GLU GLY HIS SEQRES 20 B 268 LEU PRO HIS LEU SER ALA PRO SER LEU LEU ALA GLN VAL SEQRES 21 B 268 LEU ARG ARG ALA LEU ALA ARG TYR HET OPL A 900 9 HET OPL B 900 9 HETNAM OPL (2R,3R)-2,4,4-TRIHYDROXY-3-METHYLBUTANAL FORMUL 3 OPL 2(C5 H10 O4) FORMUL 5 HOH *424(H2 O) HELIX 1 1 GLY A 3 LEU A 10 1 8 HELIX 2 2 ASP A 31 SER A 36 5 6 HELIX 3 3 VAL A 38 LEU A 42 5 5 HELIX 4 4 ASN A 60 PHE A 64 5 5 HELIX 5 5 ASN A 71 LEU A 86 1 16 HELIX 6 6 SER A 97 ARG A 110 1 14 HELIX 7 7 GLU A 137 ASN A 151 1 15 HELIX 8 8 ASN A 151 GLY A 165 1 15 HELIX 9 9 VAL A 168 ASN A 181 1 14 HELIX 10 10 ARG A 183 THR A 197 1 15 HELIX 11 11 LEU A 199 VAL A 206 5 8 HELIX 12 12 PRO A 222 LEU A 233 1 12 HELIX 13 13 LEU A 248 ALA A 253 1 6 HELIX 14 14 ALA A 253 LEU A 265 1 13 HELIX 15 15 SER B 2 LEU B 10 1 9 HELIX 16 16 ASP B 31 SER B 36 5 6 HELIX 17 17 VAL B 38 LEU B 42 5 5 HELIX 18 18 ASN B 60 PHE B 64 5 5 HELIX 19 19 ARG B 67 ASP B 70 5 4 HELIX 20 20 ASN B 71 LEU B 86 1 16 HELIX 21 21 SER B 97 ARG B 110 1 14 HELIX 22 22 GLU B 137 ASN B 151 1 15 HELIX 23 23 ASN B 151 GLY B 165 1 15 HELIX 24 24 VAL B 168 MET B 182 1 15 HELIX 25 25 ARG B 183 LYS B 196 1 14 HELIX 26 26 LEU B 199 VAL B 206 5 8 HELIX 27 27 ALA B 223 LEU B 233 1 11 HELIX 28 28 LEU B 248 ALA B 253 1 6 HELIX 29 29 ALA B 253 ALA B 266 1 14 SHEET 1 A 7 ARG A 13 GLY A 16 0 SHEET 2 A 7 ARG A 47 LEU A 50 -1 O VAL A 48 N VAL A 15 SHEET 3 A 7 VAL A 21 SER A 25 1 N VAL A 22 O VAL A 49 SHEET 4 A 7 CYS A 91 HIS A 96 1 O VAL A 94 N VAL A 23 SHEET 5 A 7 PHE A 114 ILE A 120 1 O ALA A 115 N CYS A 91 SHEET 6 A 7 CYS A 210 GLN A 214 1 O VAL A 213 N LEU A 119 SHEET 7 A 7 THR A 237 PHE A 241 1 O THR A 238 N VAL A 212 SHEET 1 B 7 ARG B 13 GLY B 16 0 SHEET 2 B 7 ARG B 47 LEU B 50 -1 O VAL B 48 N VAL B 15 SHEET 3 B 7 VAL B 21 SER B 25 1 N VAL B 22 O VAL B 49 SHEET 4 B 7 CYS B 91 HIS B 96 1 O VAL B 94 N VAL B 23 SHEET 5 B 7 PHE B 114 ILE B 120 1 O VAL B 118 N PHE B 93 SHEET 6 B 7 CYS B 210 GLN B 214 1 O VAL B 213 N LEU B 119 SHEET 7 B 7 THR B 237 PHE B 241 1 O GLU B 240 N VAL B 212 LINK OG SER A 97 C1 OPL A 900 1555 1555 1.70 LINK OG SER B 97 C1 OPL B 900 1555 1555 1.67 SITE 1 AC1 6 PHE A 28 SER A 97 VAL A 98 VAL A 194 SITE 2 AC1 6 HIS A 247 HOH A1116 SITE 1 AC2 8 PHE B 28 SER B 97 VAL B 98 TYR B 159 SITE 2 AC2 8 VAL B 194 HIS B 247 HOH B1099 HOH B1100 CRYST1 48.188 88.729 118.315 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008452 0.00000