HEADER HYDROLASE INHIBITOR 19-DEC-12 4II0 TITLE CRYSTAL STRUCTURE OF CRATABL, A TRYPSIN INHIBITOR FROM CRATAEVA TAPIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRATABL; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRATAEVA TAPIA; SOURCE 3 ORGANISM_TAXID: 202635 KEYWDS BETA-TREFOIL, SERINE PROTEASE INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,A.WLODAWER REVDAT 2 29-JUL-20 4II0 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 24-JUL-13 4II0 0 JRNL AUTH R.D.FERREIRA,D.ZHOU,J.G.FERREIRA,M.C.SILVA,R.A.SILVA-LUCCA, JRNL AUTH 2 R.MENTELE,E.J.PAREDES-GAMERO,T.C.BERTOLIN, JRNL AUTH 3 M.T.DOS SANTOS CORREIA,P.M.PAIVA,A.GUSTCHINA,A.WLODAWER, JRNL AUTH 4 M.L.OLIVA JRNL TITL CRYSTAL STRUCTURE OF CRATAEVA TAPIA BARK PROTEIN (CRATABL) JRNL TITL 2 AND ITS EFFECT IN HUMAN PROSTATE CANCER CELL LINES. JRNL REF PLOS ONE V. 8 64426 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23823708 JRNL DOI 10.1371/JOURNAL.PONE.0064426 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 951 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2675 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2560 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 154 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91000 REMARK 3 B22 (A**2) : 2.32000 REMARK 3 B33 (A**2) : -1.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.556 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2798 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3816 ; 1.716 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.798 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;26.474 ;20.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;15.372 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.700 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2051 ; 0.009 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1640 ; 0.967 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2697 ; 1.680 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1158 ; 2.609 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1119 ; 4.081 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 164 REMARK 3 RESIDUE RANGE : A 201 A 211 REMARK 3 RESIDUE RANGE : A 301 A 460 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8656 27.4025 -8.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.0634 T22: 0.0082 REMARK 3 T33: 0.0831 T12: -0.0084 REMARK 3 T13: -0.0077 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.7001 L22: 0.4851 REMARK 3 L33: 2.1590 L12: 0.0689 REMARK 3 L13: -0.7193 L23: -0.1567 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.0808 S13: 0.0081 REMARK 3 S21: 0.0820 S22: -0.0093 S23: -0.0225 REMARK 3 S31: 0.0082 S32: -0.0608 S33: 0.0131 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 164 REMARK 3 RESIDUE RANGE : B 201 B 209 REMARK 3 RESIDUE RANGE : B 302 B 437 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4009 30.6067 -38.1491 REMARK 3 T TENSOR REMARK 3 T11: 0.0459 T22: 0.0905 REMARK 3 T33: 0.0375 T12: -0.0189 REMARK 3 T13: -0.0091 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.3873 L22: 0.5636 REMARK 3 L33: 1.8460 L12: 0.0529 REMARK 3 L13: -0.8448 L23: -0.0551 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: 0.2096 S13: 0.0283 REMARK 3 S21: 0.0301 S22: 0.0640 S23: -0.0756 REMARK 3 S31: 0.0747 S32: -0.2727 S33: -0.0550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4II0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38040 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.870 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LI2SO4, 30% PEG3350, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.79250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.13950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.79250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.13950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -233.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -95.58500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -31.24285 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 53.94012 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -64.34215 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -53.94012 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -33.09931 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -107.88025 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 165 REMARK 465 GLY B 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 39 NH1 ARG A 146 1.91 REMARK 500 OE2 GLU A 139 O HOH A 402 1.95 REMARK 500 NH2 ARG A 146 O3 SO4 A 204 2.02 REMARK 500 O HOH A 398 O HOH A 401 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 35 77.59 -150.20 REMARK 500 SER A 120 -136.34 -131.38 REMARK 500 ARG A 128 14.54 57.40 REMARK 500 THR A 140 -22.55 -146.74 REMARK 500 LEU B 35 74.93 -152.92 REMARK 500 THR B 101 -168.97 -77.37 REMARK 500 SER B 120 -136.68 -136.69 REMARK 500 ARG B 128 10.35 59.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IHZ RELATED DB: PDB DBREF 4II0 A 1 165 PDB 4II0 4II0 1 165 DBREF 4II0 B 1 165 PDB 4II0 4II0 1 165 SEQRES 1 A 165 ALA ILE LEU THR GLY VAL PRO TYR TYR ILE LEU PRO SER SEQRES 2 A 165 THR SER ARG ALA GLY PHE SER PRO ASP ASN LEU ARG LYS SEQRES 3 A 165 ASN THR SER GLN PRO SER CYS PRO LEU ASP LEU ILE THR SEQRES 4 A 165 GLN LEU ARG PHE PRO PRO ARG ILE GLY VAL PRO VAL ILE SEQRES 5 A 165 PHE THR PRO GLN ASN SER SER LEU LYS VAL VAL PRO LEU SEQRES 6 A 165 SER HIS ASN LEU ASN ILE HIS THR CSX SER ASP LEU TRP SEQRES 7 A 165 PHE CYS PRO GLU SER LYS ILE TRP THR VAL LYS SER SER SEQRES 8 A 165 SER ILE HIS ARG GLY LEU VAL VAL THR THR GLY GLY THR SEQRES 9 A 165 PHE ARG SER LEU GLY SER TRP PHE ARG ILE GLU ARG HIS SEQRES 10 A 165 GLY ASP SER TYR LYS LEU VAL HIS CYS PRO ARG GLY SER SEQRES 11 A 165 THR PRO CYS ARG ASP VAL GLY ILE GLU THR VAL GLY GLY SEQRES 12 A 165 GLY GLY ARG ARG TYR LEU ALA PRO ARG ASP ARG PRO LEU SEQRES 13 A 165 ALA VAL ARG PHE THR ARG ALA SER GLY SEQRES 1 B 165 ALA ILE LEU THR GLY VAL PRO TYR TYR ILE LEU PRO SER SEQRES 2 B 165 THR SER ARG ALA GLY PHE SER PRO ASP ASN LEU ARG LYS SEQRES 3 B 165 ASN THR SER GLN PRO SER CYS PRO LEU ASP LEU ILE THR SEQRES 4 B 165 GLN LEU ARG PHE PRO PRO ARG ILE GLY VAL PRO VAL ILE SEQRES 5 B 165 PHE THR PRO GLN ASN SER SER LEU LYS VAL VAL PRO LEU SEQRES 6 B 165 SER HIS ASN LEU ASN ILE HIS THR CSX SER ASP LEU TRP SEQRES 7 B 165 PHE CYS PRO GLU SER LYS ILE TRP THR VAL LYS SER SER SEQRES 8 B 165 SER ILE HIS ARG GLY LEU VAL VAL THR THR GLY GLY THR SEQRES 9 B 165 PHE ARG SER LEU GLY SER TRP PHE ARG ILE GLU ARG HIS SEQRES 10 B 165 GLY ASP SER TYR LYS LEU VAL HIS CYS PRO ARG GLY SER SEQRES 11 B 165 THR PRO CYS ARG ASP VAL GLY ILE GLU THR VAL GLY GLY SEQRES 12 B 165 GLY GLY ARG ARG TYR LEU ALA PRO ARG ASP ARG PRO LEU SEQRES 13 B 165 ALA VAL ARG PHE THR ARG ALA SER GLY MODRES 4II0 ASN A 27 ASN GLYCOSYLATION SITE MODRES 4II0 ASN B 57 ASN GLYCOSYLATION SITE MODRES 4II0 ASN A 57 ASN GLYCOSYLATION SITE MODRES 4II0 ASN B 27 ASN GLYCOSYLATION SITE MODRES 4II0 CSX A 74 CYS S-OXY CYSTEINE MODRES 4II0 CSX B 74 CYS S-OXY CYSTEINE HET CSX A 74 7 HET CSX B 74 7 HET NAG C 1 14 HET FUC C 2 10 HET NAG C 3 14 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET GOL A 209 6 HET GOL A 210 6 HET NAG A 211 14 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET GOL B 206 6 HET GOL B 207 6 HET NAG B 208 14 HET NAG B 209 14 HETNAM CSX S-OXY CYSTEINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSX 2(C3 H7 N O3 S) FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 4 SO4 10(O4 S 2-) FORMUL 9 GOL 4(C3 H8 O3) FORMUL 21 HOH *297(H2 O) HELIX 1 1 ASP A 22 ASN A 27 1 6 HELIX 2 2 SER A 92 ARG A 95 5 4 HELIX 3 3 PRO A 127 SER A 130 5 4 HELIX 4 4 ASP B 22 ASN B 27 1 6 HELIX 5 5 PRO B 127 SER B 130 5 4 SHEET 1 A 4 LEU A 69 THR A 73 0 SHEET 2 A 4 VAL A 51 PRO A 55 -1 N THR A 54 O ASN A 70 SHEET 3 A 4 PRO A 7 PRO A 12 -1 N TYR A 8 O VAL A 51 SHEET 4 A 4 VAL A 158 ARG A 162 -1 O ARG A 159 N LEU A 11 SHEET 1 B 2 PHE A 19 PRO A 21 0 SHEET 2 B 2 ILE A 38 GLN A 40 -1 O THR A 39 N SER A 20 SHEET 1 C 2 THR A 87 SER A 91 0 SHEET 2 C 2 GLY A 96 THR A 100 -1 O THR A 100 N THR A 87 SHEET 1 D 4 PHE A 112 HIS A 117 0 SHEET 2 D 4 SER A 120 HIS A 125 -1 O LYS A 122 N GLU A 115 SHEET 3 D 4 ARG A 134 GLU A 139 -1 O ARG A 134 N HIS A 125 SHEET 4 D 4 TYR A 148 PRO A 151 -1 O TYR A 148 N GLU A 139 SHEET 1 E 4 LEU B 69 THR B 73 0 SHEET 2 E 4 VAL B 51 PRO B 55 -1 N THR B 54 O ASN B 70 SHEET 3 E 4 PRO B 7 PRO B 12 -1 N TYR B 8 O VAL B 51 SHEET 4 E 4 VAL B 158 ARG B 162 -1 O THR B 161 N TYR B 9 SHEET 1 F 2 PHE B 19 PRO B 21 0 SHEET 2 F 2 ILE B 38 GLN B 40 -1 O THR B 39 N SER B 20 SHEET 1 G 2 THR B 87 SER B 91 0 SHEET 2 G 2 GLY B 96 THR B 100 -1 O THR B 100 N THR B 87 SHEET 1 H 4 PHE B 112 HIS B 117 0 SHEET 2 H 4 SER B 120 HIS B 125 -1 O SER B 120 N HIS B 117 SHEET 3 H 4 ARG B 134 GLU B 139 -1 O ARG B 134 N HIS B 125 SHEET 4 H 4 TYR B 148 ARG B 152 -1 O ARG B 152 N ASP B 135 SSBOND 1 CYS A 33 CYS A 80 1555 1555 2.09 SSBOND 2 CYS A 126 CYS A 133 1555 1555 2.10 SSBOND 3 CYS B 33 CYS B 80 1555 1555 2.07 SSBOND 4 CYS B 126 CYS B 133 1555 1555 2.10 LINK ND2 ASN A 27 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 57 C1 NAG A 211 1555 1555 1.45 LINK C THR A 73 N CSX A 74 1555 1555 1.33 LINK C CSX A 74 N SER A 75 1555 1555 1.33 LINK ND2 ASN B 27 C1 NAG B 208 1555 1555 1.47 LINK ND2 ASN B 57 C1 NAG B 209 1555 1555 1.45 LINK C THR B 73 N CSX B 74 1555 1555 1.35 LINK C CSX B 74 N SER B 75 1555 1555 1.33 LINK O3 NAG C 1 C1 FUC C 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 3 1555 1555 1.44 CISPEP 1 PHE A 43 PRO A 44 0 1.81 CISPEP 2 THR A 131 PRO A 132 0 3.28 CISPEP 3 ALA A 163 SER A 164 0 -0.50 CISPEP 4 PHE B 43 PRO B 44 0 -4.55 CISPEP 5 THR B 131 PRO B 132 0 5.32 CISPEP 6 ALA B 163 SER B 164 0 8.28 CRYST1 95.585 76.279 62.335 90.00 120.08 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010462 0.000000 0.006060 0.00000 SCALE2 0.000000 0.013110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018539 0.00000