HEADER OXIDOREDUCTASE 23-DEC-12 4IJR TITLE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ARABINOSE DEHYDROGENASE TITLE 2 ARA1 COMPLEXED WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ARABINOSE DEHYDROGENASE [NAD(P)+] HEAVY CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: AKR3C, NADP+ DEPENDENT ARABINOSE DEHYDROGENASE; COMPND 5 EC: 1.1.1.117; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: ARA1, YBR1127, YBR149W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TIM BARREL, DEHYDROGENASE, NADPH BINDING, CYTOSOL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.Q.HU,P.C.GUO,W.F.LI,C.Z.ZHOU REVDAT 2 08-NOV-23 4IJR 1 REMARK REVDAT 1 27-NOV-13 4IJR 0 JRNL AUTH X.Q.HU,P.C.GUO,J.D.MA,W.F.LI JRNL TITL STRUCTURES OF SACCHAROMYCES CEREVISIAED-ARABINOSE JRNL TITL 2 DEHYDROGENASE ARA1 AND ITS COMPLEX WITH NADPH: IMPLICATIONS JRNL TITL 3 FOR COFACTOR-ASSISTED SUBSTRATE RECOGNITION JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 1190 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 24192347 JRNL DOI 10.1107/S1744309113026857 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 42727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2268 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.12000 REMARK 3 B22 (A**2) : -2.75000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.224 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.639 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5474 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7452 ; 1.337 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 5.526 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;34.701 ;24.583 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 948 ;14.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 834 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4076 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3282 ; 0.573 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5334 ; 1.027 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2192 ; 1.641 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2118 ; 2.630 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 342 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3100 0.2990 11.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.1025 REMARK 3 T33: 0.0316 T12: -0.0507 REMARK 3 T13: -0.0143 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.6856 L22: 2.0023 REMARK 3 L33: 0.8756 L12: -0.0980 REMARK 3 L13: 0.0728 L23: 0.0174 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: 0.0432 S13: 0.0242 REMARK 3 S21: -0.1041 S22: -0.0026 S23: -0.0952 REMARK 3 S31: -0.2062 S32: 0.1804 S33: 0.0689 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1770 -0.4950 3.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.1188 T22: 0.1966 REMARK 3 T33: 0.1296 T12: -0.0909 REMARK 3 T13: 0.0090 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 1.8782 L22: 0.7588 REMARK 3 L33: 7.8556 L12: -0.2675 REMARK 3 L13: 2.9612 L23: -1.9373 REMARK 3 S TENSOR REMARK 3 S11: -0.2667 S12: 0.2916 S13: 0.2699 REMARK 3 S21: -0.1159 S22: 0.0544 S23: 0.0565 REMARK 3 S31: -0.0704 S32: 0.2152 S33: 0.2123 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 15 C 342 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2320 -36.4590 23.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: 0.0917 REMARK 3 T33: 0.0289 T12: 0.0533 REMARK 3 T13: 0.0181 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.6886 L22: 1.9625 REMARK 3 L33: 0.8612 L12: 0.1437 REMARK 3 L13: -0.0476 L23: 0.0378 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: -0.0325 S13: -0.0450 REMARK 3 S21: 0.1809 S22: 0.0001 S23: -0.0939 REMARK 3 S31: 0.2076 S32: 0.1715 S33: 0.0735 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 401 C 401 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1100 -35.6250 31.8760 REMARK 3 T TENSOR REMARK 3 T11: 0.0301 T22: 0.0412 REMARK 3 T33: 0.0119 T12: 0.0306 REMARK 3 T13: -0.0004 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.7774 L22: 0.0785 REMARK 3 L33: 9.2706 L12: -0.2062 REMARK 3 L13: 1.9888 L23: 0.3896 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: -0.1190 S13: -0.1013 REMARK 3 S21: 0.0151 S22: 0.0251 S23: 0.0234 REMARK 3 S31: 0.0671 S32: 0.0143 S33: 0.0185 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 646 REMARK 3 RESIDUE RANGE : C 501 C 669 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5560 -18.0040 17.7550 REMARK 3 T TENSOR REMARK 3 T11: 0.0076 T22: 0.1490 REMARK 3 T33: 0.1126 T12: 0.0077 REMARK 3 T13: 0.0022 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0777 L22: 1.1803 REMARK 3 L33: 0.5034 L12: -0.0516 REMARK 3 L13: 0.0200 L23: -0.1716 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: -0.0091 S13: 0.0258 REMARK 3 S21: -0.0015 S22: -0.0110 S23: 0.0074 REMARK 3 S31: 0.0244 S32: 0.1007 S33: 0.0340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4IJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45854 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 21.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.17800 REMARK 200 R SYM FOR SHELL (I) : 0.17800 REMARK 200 FOR SHELL : 7.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4IJC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% POLYETHYLENE GLYCOL 3350, 0.1M BIS REMARK 280 -TRIS PH 6.5, 0.05M CACL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.28400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 ILE A 11 REMARK 465 VAL A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 LYS A 343 REMARK 465 TYR A 344 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 VAL C 5 REMARK 465 ALA C 6 REMARK 465 SER C 7 REMARK 465 THR C 8 REMARK 465 GLU C 9 REMARK 465 ASN C 10 REMARK 465 ILE C 11 REMARK 465 VAL C 12 REMARK 465 GLU C 13 REMARK 465 ASN C 14 REMARK 465 LYS C 343 REMARK 465 TYR C 344 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 218 178.16 172.03 REMARK 500 LEU A 221 77.56 -152.42 REMARK 500 ASP A 234 41.37 72.99 REMARK 500 SER A 245 -150.50 69.48 REMARK 500 ASP A 322 62.16 -159.73 REMARK 500 ASP C 164 19.43 58.62 REMARK 500 CYS C 206 -167.28 -107.90 REMARK 500 HIS C 218 -179.69 170.84 REMARK 500 LEU C 221 75.70 -154.30 REMARK 500 ASP C 234 37.60 73.45 REMARK 500 SER C 245 -148.49 68.92 REMARK 500 ASP C 322 62.10 -160.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP C 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IJC RELATED DB: PDB DBREF 4IJR A 1 344 UNP P38115 ARA1_YEAST 1 344 DBREF 4IJR C 1 344 UNP P38115 ARA1_YEAST 1 344 SEQRES 1 A 344 MET SER SER SER VAL ALA SER THR GLU ASN ILE VAL GLU SEQRES 2 A 344 ASN MET LEU HIS PRO LYS THR THR GLU ILE TYR PHE SER SEQRES 3 A 344 LEU ASN ASN GLY VAL ARG ILE PRO ALA LEU GLY LEU GLY SEQRES 4 A 344 THR ALA ASN PRO HIS GLU LYS LEU ALA GLU THR LYS GLN SEQRES 5 A 344 ALA VAL LYS ALA ALA ILE LYS ALA GLY TYR ARG HIS ILE SEQRES 6 A 344 ASP THR ALA TRP ALA TYR GLU THR GLU PRO PHE VAL GLY SEQRES 7 A 344 GLU ALA ILE LYS GLU LEU LEU GLU ASP GLY SER ILE LYS SEQRES 8 A 344 ARG GLU ASP LEU PHE ILE THR THR LYS VAL TRP PRO VAL SEQRES 9 A 344 LEU TRP ASP GLU VAL ASP ARG SER LEU ASN GLU SER LEU SEQRES 10 A 344 LYS ALA LEU GLY LEU GLU TYR VAL ASP LEU LEU LEU GLN SEQRES 11 A 344 HIS TRP PRO LEU CYS PHE GLU LYS ILE LYS ASP PRO LYS SEQRES 12 A 344 GLY ILE SER GLY LEU VAL LYS THR PRO VAL ASP ASP SER SEQRES 13 A 344 GLY LYS THR MET TYR ALA ALA ASP GLY ASP TYR LEU GLU SEQRES 14 A 344 THR TYR LYS GLN LEU GLU LYS ILE TYR LEU ASP PRO ASN SEQRES 15 A 344 ASP HIS ARG VAL ARG ALA ILE GLY VAL SER ASN PHE SER SEQRES 16 A 344 ILE GLU TYR LEU GLU ARG LEU ILE LYS GLU CYS ARG VAL SEQRES 17 A 344 LYS PRO THR VAL ASN GLN VAL GLU THR HIS PRO HIS LEU SEQRES 18 A 344 PRO GLN MET GLU LEU ARG LYS PHE CYS PHE MET HIS ASP SEQRES 19 A 344 ILE LEU LEU THR ALA TYR SER PRO LEU GLY SER HIS GLY SEQRES 20 A 344 ALA PRO ASN LEU LYS ILE PRO LEU VAL LYS LYS LEU ALA SEQRES 21 A 344 GLU LYS TYR ASN VAL THR GLY ASN ASP LEU LEU ILE SER SEQRES 22 A 344 TYR HIS ILE ARG GLN GLY THR ILE VAL ILE PRO ARG SER SEQRES 23 A 344 LEU ASN PRO VAL ARG ILE SER SER SER ILE GLU PHE ALA SEQRES 24 A 344 SER LEU THR LYS ASP GLU LEU GLN GLU LEU ASN ASP PHE SEQRES 25 A 344 GLY GLU LYS TYR PRO VAL ARG PHE ILE ASP GLU PRO PHE SEQRES 26 A 344 ALA ALA ILE LEU PRO GLU PHE THR GLY ASN GLY PRO ASN SEQRES 27 A 344 LEU ASP ASN LEU LYS TYR SEQRES 1 C 344 MET SER SER SER VAL ALA SER THR GLU ASN ILE VAL GLU SEQRES 2 C 344 ASN MET LEU HIS PRO LYS THR THR GLU ILE TYR PHE SER SEQRES 3 C 344 LEU ASN ASN GLY VAL ARG ILE PRO ALA LEU GLY LEU GLY SEQRES 4 C 344 THR ALA ASN PRO HIS GLU LYS LEU ALA GLU THR LYS GLN SEQRES 5 C 344 ALA VAL LYS ALA ALA ILE LYS ALA GLY TYR ARG HIS ILE SEQRES 6 C 344 ASP THR ALA TRP ALA TYR GLU THR GLU PRO PHE VAL GLY SEQRES 7 C 344 GLU ALA ILE LYS GLU LEU LEU GLU ASP GLY SER ILE LYS SEQRES 8 C 344 ARG GLU ASP LEU PHE ILE THR THR LYS VAL TRP PRO VAL SEQRES 9 C 344 LEU TRP ASP GLU VAL ASP ARG SER LEU ASN GLU SER LEU SEQRES 10 C 344 LYS ALA LEU GLY LEU GLU TYR VAL ASP LEU LEU LEU GLN SEQRES 11 C 344 HIS TRP PRO LEU CYS PHE GLU LYS ILE LYS ASP PRO LYS SEQRES 12 C 344 GLY ILE SER GLY LEU VAL LYS THR PRO VAL ASP ASP SER SEQRES 13 C 344 GLY LYS THR MET TYR ALA ALA ASP GLY ASP TYR LEU GLU SEQRES 14 C 344 THR TYR LYS GLN LEU GLU LYS ILE TYR LEU ASP PRO ASN SEQRES 15 C 344 ASP HIS ARG VAL ARG ALA ILE GLY VAL SER ASN PHE SER SEQRES 16 C 344 ILE GLU TYR LEU GLU ARG LEU ILE LYS GLU CYS ARG VAL SEQRES 17 C 344 LYS PRO THR VAL ASN GLN VAL GLU THR HIS PRO HIS LEU SEQRES 18 C 344 PRO GLN MET GLU LEU ARG LYS PHE CYS PHE MET HIS ASP SEQRES 19 C 344 ILE LEU LEU THR ALA TYR SER PRO LEU GLY SER HIS GLY SEQRES 20 C 344 ALA PRO ASN LEU LYS ILE PRO LEU VAL LYS LYS LEU ALA SEQRES 21 C 344 GLU LYS TYR ASN VAL THR GLY ASN ASP LEU LEU ILE SER SEQRES 22 C 344 TYR HIS ILE ARG GLN GLY THR ILE VAL ILE PRO ARG SER SEQRES 23 C 344 LEU ASN PRO VAL ARG ILE SER SER SER ILE GLU PHE ALA SEQRES 24 C 344 SER LEU THR LYS ASP GLU LEU GLN GLU LEU ASN ASP PHE SEQRES 25 C 344 GLY GLU LYS TYR PRO VAL ARG PHE ILE ASP GLU PRO PHE SEQRES 26 C 344 ALA ALA ILE LEU PRO GLU PHE THR GLY ASN GLY PRO ASN SEQRES 27 C 344 LEU ASP ASN LEU LYS TYR HET NDP A 401 48 HET NDP C 401 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 HOH *315(H2 O) HELIX 1 1 LYS A 19 GLU A 22 5 4 HELIX 2 2 PRO A 43 ALA A 48 5 6 HELIX 3 3 GLU A 49 ALA A 60 1 12 HELIX 4 4 ALA A 68 GLU A 72 5 5 HELIX 5 5 THR A 73 ASP A 87 1 15 HELIX 6 6 LYS A 91 LEU A 95 5 5 HELIX 7 7 TRP A 102 TRP A 106 5 5 HELIX 8 8 GLU A 108 GLY A 121 1 14 HELIX 9 9 GLY A 144 LEU A 148 5 5 HELIX 10 10 ASP A 166 ASP A 180 1 15 HELIX 11 11 SER A 195 CYS A 206 1 12 HELIX 12 12 GLN A 223 ASP A 234 1 12 HELIX 13 13 ALA A 248 LYS A 252 5 5 HELIX 14 14 ILE A 253 TYR A 263 1 11 HELIX 15 15 THR A 266 GLN A 278 1 13 HELIX 16 16 ASN A 288 SER A 295 1 8 HELIX 17 17 THR A 302 TYR A 316 1 15 HELIX 18 18 GLU A 323 ALA A 327 5 5 HELIX 19 19 ASN A 338 LEU A 342 5 5 HELIX 20 20 LYS C 19 GLU C 22 5 4 HELIX 21 21 PRO C 43 ALA C 48 5 6 HELIX 22 22 GLU C 49 GLY C 61 1 13 HELIX 23 23 ALA C 68 GLU C 72 5 5 HELIX 24 24 THR C 73 ASP C 87 1 15 HELIX 25 25 LYS C 91 LEU C 95 5 5 HELIX 26 26 TRP C 102 TRP C 106 5 5 HELIX 27 27 GLU C 108 GLY C 121 1 14 HELIX 28 28 GLY C 144 LEU C 148 5 5 HELIX 29 29 TYR C 167 ASP C 180 1 14 HELIX 30 30 SER C 195 CYS C 206 1 12 HELIX 31 31 GLN C 223 ASP C 234 1 12 HELIX 32 32 ALA C 248 LYS C 252 5 5 HELIX 33 33 ILE C 253 TYR C 263 1 11 HELIX 34 34 THR C 266 GLN C 278 1 13 HELIX 35 35 ASN C 288 SER C 295 1 8 HELIX 36 36 THR C 302 TYR C 316 1 15 HELIX 37 37 GLU C 323 ALA C 327 5 5 HELIX 38 38 ASN C 338 LEU C 342 5 5 SHEET 1 A 2 TYR A 24 SER A 26 0 SHEET 2 A 2 ARG A 32 PRO A 34 -1 O ILE A 33 N PHE A 25 SHEET 1 B 8 LEU A 38 GLY A 39 0 SHEET 2 B 8 HIS A 64 ASP A 66 1 O ASP A 66 N LEU A 38 SHEET 3 B 8 PHE A 96 VAL A 101 1 O PHE A 96 N ILE A 65 SHEET 4 B 8 LEU A 127 GLN A 130 1 O LEU A 129 N VAL A 101 SHEET 5 B 8 ILE A 189 SER A 192 1 O GLY A 190 N GLN A 130 SHEET 6 B 8 VAL A 212 GLU A 216 1 O GLN A 214 N VAL A 191 SHEET 7 B 8 LEU A 236 TYR A 240 1 O THR A 238 N VAL A 215 SHEET 8 B 8 ILE A 281 VAL A 282 1 O ILE A 281 N ALA A 239 SHEET 1 C 2 TYR C 24 SER C 26 0 SHEET 2 C 2 ARG C 32 PRO C 34 -1 O ILE C 33 N PHE C 25 SHEET 1 D 8 LEU C 38 GLY C 39 0 SHEET 2 D 8 HIS C 64 ASP C 66 1 O ASP C 66 N LEU C 38 SHEET 3 D 8 PHE C 96 VAL C 101 1 O PHE C 96 N ILE C 65 SHEET 4 D 8 LEU C 127 GLN C 130 1 O LEU C 129 N VAL C 101 SHEET 5 D 8 ILE C 189 SER C 192 1 O GLY C 190 N GLN C 130 SHEET 6 D 8 VAL C 212 GLU C 216 1 O GLN C 214 N VAL C 191 SHEET 7 D 8 LEU C 236 TYR C 240 1 O TYR C 240 N VAL C 215 SHEET 8 D 8 ILE C 281 VAL C 282 1 O ILE C 281 N ALA C 239 CISPEP 1 HIS A 17 PRO A 18 0 -5.39 CISPEP 2 HIS C 17 PRO C 18 0 -4.37 SITE 1 AC1 26 GLY A 39 THR A 40 ALA A 41 ASP A 66 SITE 2 AC1 26 TYR A 71 HIS A 131 SER A 192 ASN A 193 SITE 3 AC1 26 GLN A 214 TYR A 240 SER A 241 PRO A 242 SITE 4 AC1 26 LEU A 243 GLY A 244 SER A 245 ALA A 248 SITE 5 AC1 26 LEU A 251 ASN A 268 ILE A 283 PRO A 284 SITE 6 AC1 26 ARG A 285 SER A 286 LEU A 287 ARG A 291 SITE 7 AC1 26 HOH A 586 HOH A 594 SITE 1 AC2 26 GLY C 39 THR C 40 ALA C 41 ASP C 66 SITE 2 AC2 26 TYR C 71 HIS C 131 TRP C 132 SER C 192 SITE 3 AC2 26 ASN C 193 GLN C 214 TYR C 240 SER C 241 SITE 4 AC2 26 PRO C 242 LEU C 243 GLY C 244 SER C 245 SITE 5 AC2 26 ALA C 248 LEU C 251 ASN C 268 ILE C 283 SITE 6 AC2 26 PRO C 284 ARG C 285 SER C 286 LEU C 287 SITE 7 AC2 26 ARG C 291 HOH C 617 CRYST1 54.369 90.568 69.823 90.00 90.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018393 0.000000 0.000026 0.00000 SCALE2 0.000000 0.011041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014322 0.00000