HEADER FLUORESCENT PROTEIN 25-DEC-12 4IK5 TITLE HIGH RESOLUTION STRUCTURE OF DELTA-REST-GCAMP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RCAMP, GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: CHIMERA OF RESIDUES 25-48 OF RCAMP, LINKER LE, COMPND 7 RESIDUES 149-238 OF GREEN FLUORESCENT PROTEIN, LINKER GGTGGSMV, COMPND 8 RESIDUES 2-144 OF GREEN FLUORESCENT PROTEIN, RESIDUES 284-432 OF COMPND 9 RCAMP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTACMAEA QUADRICOLOR, AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: BUBBLE-TIP ANEMONE, JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6118, 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALCIUM INDICATOR, MUTANTS, FLUORESCENT INTENSITY, DIMERIZATION, KEYWDS 2 BETA-BARREL, CALMODULIN, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,X.SONG,L.MIAO,Y.ZHU,G.JI REVDAT 2 21-JUN-17 4IK5 1 SEQADV LINK REVDAT 1 29-JAN-14 4IK5 0 JRNL AUTH Y.CHEN,X.SONG,S.YE,L.MIAO,Y.ZHU,R.G.ZHANG,G.JI JRNL TITL STRUCTURAL INSIGHT INTO ENHANCED CALCIUM INDICATOR GCAMP3 JRNL TITL 2 AND GCAMPJ TO PROMOTE FURTHER IMPROVEMENT. JRNL REF PROTEIN CELL V. 4 299 2013 JRNL REFN ISSN 1674-800X JRNL PMID 23549615 JRNL DOI 10.1007/S13238-013-2103-4 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 23529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1244 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.655 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.023 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.998 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 6.878 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4IK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : BE FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27021 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS PH 8.5, NH4OAC, 23% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.43800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.01050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.01050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.21900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.01050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.01050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.65700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.01050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.01050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.21900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.01050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.01050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.65700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.43800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 708 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 869 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 35 REMARK 465 VAL A 36 REMARK 465 ASP A 37 REMARK 465 SER A 38 REMARK 465 SER A 39 REMARK 465 GLY A 144 REMARK 465 MET A 145 REMARK 465 ASP A 146 REMARK 465 GLU A 147 REMARK 465 LEU A 148 REMARK 465 TYR A 149 REMARK 465 LYS A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 THR A 153 REMARK 465 GLY A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 MET A 157 REMARK 465 VAL A 158 REMARK 465 ALA A 449 REMARK 465 LYS A 450 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LEU A 143 O HOH A 728 1.77 REMARK 500 O SER A 120 O HOH A 886 1.92 REMARK 500 O HOH A 608 O HOH A 792 2.00 REMARK 500 CA LEU A 306 O HOH A 905 2.04 REMARK 500 O HOH A 622 O HOH A 857 2.14 REMARK 500 O HOH A 815 O HOH A 885 2.17 REMARK 500 O THR A 302 O HOH A 862 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 VAL A 88 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 MET A 353 CG - SD - CE ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 41 12.32 -55.19 REMARK 500 LYS A 42 15.72 -58.03 REMARK 500 ARG A 303 64.85 79.63 REMARK 500 LEU A 306 69.24 -61.28 REMARK 500 GLU A 308 -46.82 68.26 REMARK 500 ASN A 344 67.15 -150.23 REMARK 500 ASP A 395 62.82 -60.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 322 OD1 REMARK 620 2 ASP A 326 OD1 83.9 REMARK 620 3 GLU A 333 OE2 97.6 157.6 REMARK 620 4 THR A 328 O 83.3 81.9 120.6 REMARK 620 5 ASP A 324 OD1 74.4 84.8 74.1 155.1 REMARK 620 6 HOH A 629 O 152.4 81.9 87.0 117.7 80.9 REMARK 620 7 GLU A 333 OE1 120.2 143.5 53.3 75.1 125.9 84.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 401 O REMARK 620 2 ASN A 399 OD1 76.3 REMARK 620 3 GLU A 406 OE1 72.5 148.7 REMARK 620 4 ASP A 395 OD1 87.7 79.2 102.1 REMARK 620 5 GLU A 406 OE2 126.7 156.8 54.3 101.5 REMARK 620 6 ASP A 397 OD1 150.7 74.7 136.6 82.4 82.4 REMARK 620 7 HOH A 727 O 99.5 95.1 87.3 169.6 80.3 87.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 435 OD1 REMARK 620 2 ASP A 431 OD1 95.4 REMARK 620 3 HOH A 616 O 90.4 165.5 REMARK 620 4 GLN A 437 O 76.1 91.3 102.9 REMARK 620 5 ASP A 433 OD1 90.9 76.6 90.2 161.5 REMARK 620 6 GLU A 442 OE2 165.5 82.4 88.6 118.2 74.6 REMARK 620 7 GLU A 442 OE1 142.1 111.4 70.3 76.9 120.4 50.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 358 OD1 REMARK 620 2 ASP A 362 OD1 87.7 REMARK 620 3 THR A 364 O 84.7 78.0 REMARK 620 4 ASP A 360 OD1 76.8 81.1 152.5 REMARK 620 5 HOH A 609 O 169.3 91.4 105.6 92.5 REMARK 620 6 GLU A 369 OE2 103.8 148.6 74.2 129.8 82.4 REMARK 620 7 GLU A 369 OE1 88.3 161.4 119.8 80.3 89.2 49.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IK1 RELATED DB: PDB REMARK 900 RELATED ID: 4IK3 RELATED DB: PDB REMARK 900 RELATED ID: 4IK4 RELATED DB: PDB REMARK 900 RELATED ID: 4IK8 RELATED DB: PDB REMARK 900 RELATED ID: 4IK9 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 (1) THIS CHIMERA COMPRISES OF RESIDUES 25-48 OF RCAMP, LINKER LE, REMARK 999 RESIDUES 149-238 OF GREEN FLUORESCENT PROTEIN, LINKER GGTGGSMV, REMARK 999 RESIDUES 2-144 OF GREEN FLUORESCENT PROTEIN, RESIDUES 284-432 OF REMARK 999 RCAMP (2) RESIDUE SER 222 HAS BEEN MUTATED TO GLY. RESIDUES GLY 222, REMARK 999 TYR 223 AND GLY 224 CONSTITUTE THE CHROMOPHORE CRO 222 DBREF 4IK5 A 35 58 UNP K4DIE3 K4DIE3_ENTQU 25 48 DBREF 4IK5 A 61 150 UNP P42212 GFP_AEQVI 149 238 DBREF 4IK5 A 159 301 UNP P42212 GFP_AEQVI 2 144 DBREF 4IK5 A 302 450 UNP K4DIE3 K4DIE3_ENTQU 284 432 SEQADV 4IK5 LEU A 59 UNP K4DIE3 LINKER SEQADV 4IK5 GLU A 60 UNP K4DIE3 LINKER SEQADV 4IK5 LYS A 65 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 4IK5 ALA A 75 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 4IK5 GLY A 87 UNP P42212 SER 175 ENGINEERED MUTATION SEQADV 4IK5 TYR A 92 UNP P42212 ASP 180 ENGINEERED MUTATION SEQADV 4IK5 VAL A 115 UNP P42212 THR 203 ENGINEERED MUTATION SEQADV 4IK5 LYS A 118 UNP P42212 ALA 206 ENGINEERED MUTATION SEQADV 4IK5 LEU A 143 UNP P42212 HIS 231 ENGINEERED MUTATION SEQADV 4IK5 GLY A 151 UNP P42212 LINKER SEQADV 4IK5 GLY A 152 UNP P42212 LINKER SEQADV 4IK5 THR A 153 UNP P42212 LINKER SEQADV 4IK5 GLY A 154 UNP P42212 LINKER SEQADV 4IK5 GLY A 155 UNP P42212 LINKER SEQADV 4IK5 SER A 156 UNP P42212 LINKER SEQADV 4IK5 MET A 157 UNP P42212 LINKER SEQADV 4IK5 VAL A 158 UNP P42212 LINKER SEQADV 4IK5 LEU A 221 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 4IK5 CRO A 222 UNP P42212 SER 65 CHROMOPHORE SEQADV 4IK5 CRO A 222 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4IK5 CRO A 222 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4IK5 ILE A 250 UNP P42212 VAL 93 ENGINEERED MUTATION SEQADV 4IK5 THR A 372 UNP K4DIE3 ILE 354 ENGINEERED MUTATION SEQRES 1 A 414 MET VAL ASP SER SER ARG ARG LYS TRP ASN LYS THR GLY SEQRES 2 A 414 HIS ALA VAL ARG ALA ILE GLY ARG LEU SER SER LEU GLU SEQRES 3 A 414 ASN VAL TYR ILE LYS ALA ASP LYS GLN LYS ASN GLY ILE SEQRES 4 A 414 LYS ALA ASN PHE LYS ILE ARG HIS ASN ILE GLU ASP GLY SEQRES 5 A 414 GLY VAL GLN LEU ALA TYR HIS TYR GLN GLN ASN THR PRO SEQRES 6 A 414 ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS TYR SEQRES 7 A 414 LEU SER VAL GLN SER LYS LEU SER LYS ASP PRO ASN GLU SEQRES 8 A 414 LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR ALA SEQRES 9 A 414 ALA GLY ILE THR LEU GLY MET ASP GLU LEU TYR LYS GLY SEQRES 10 A 414 GLY THR GLY GLY SER MET VAL SER LYS GLY GLU GLU LEU SEQRES 11 A 414 PHE THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY SEQRES 12 A 414 ASP VAL ASN GLY HIS LYS PHE SER VAL SER GLY GLU GLY SEQRES 13 A 414 GLU GLY ASP ALA THR TYR GLY LYS LEU THR LEU LYS PHE SEQRES 14 A 414 ILE CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR SEQRES 15 A 414 LEU VAL THR THR LEU CRO VAL GLN CYS PHE SER ARG TYR SEQRES 16 A 414 PRO ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA SEQRES 17 A 414 MET PRO GLU GLY TYR ILE GLN GLU ARG THR ILE PHE PHE SEQRES 18 A 414 LYS ASP ASP GLY ASN TYR LYS THR ARG ALA GLU VAL LYS SEQRES 19 A 414 PHE GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS SEQRES 20 A 414 GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS SEQRES 21 A 414 LYS LEU GLU TYR ASN THR ARG ASP GLN LEU THR GLU GLU SEQRES 22 A 414 GLN ILE ALA GLU PHE LYS GLU ALA PHE SER LEU PHE ASP SEQRES 23 A 414 LYS ASP GLY ASP GLY THR ILE THR THR LYS GLU LEU GLY SEQRES 24 A 414 THR VAL MET ARG SER LEU GLY GLN ASN PRO THR GLU ALA SEQRES 25 A 414 GLU LEU GLN ASP MET ILE ASN GLU VAL ASP ALA ASP GLY SEQRES 26 A 414 ASP GLY THR ILE ASP PHE PRO GLU PHE LEU THR MET MET SEQRES 27 A 414 ALA ARG LYS MET LYS ASP THR ASP SER GLU GLU GLU ILE SEQRES 28 A 414 ARG GLU ALA PHE ARG VAL PHE ASP LYS ASP GLY ASN GLY SEQRES 29 A 414 TYR ILE SER ALA ALA GLU LEU ARG HIS VAL MET THR ASN SEQRES 30 A 414 LEU GLY GLU LYS LEU THR ASP GLU GLU VAL ASP GLU MET SEQRES 31 A 414 ILE ARG GLU ALA ASP ILE ASP GLY ASP GLY GLN VAL ASN SEQRES 32 A 414 TYR GLU GLU PHE VAL GLN MET MET THR ALA LYS MODRES 4IK5 CRO A 222 GLY MODRES 4IK5 CRO A 222 TYR MODRES 4IK5 CRO A 222 GLY HET CRO A 222 22 HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM CA CALCIUM ION HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO C15 H17 N3 O5 FORMUL 2 CA 4(CA 2+) FORMUL 6 HOH *306(H2 O) HELIX 1 1 LYS A 42 SER A 57 1 16 HELIX 2 2 LYS A 68 ASN A 71 5 4 HELIX 3 3 SER A 159 THR A 166 5 8 HELIX 4 4 PRO A 213 VAL A 218 5 6 HELIX 5 5 VAL A 225 SER A 229 5 5 HELIX 6 6 PRO A 232 HIS A 238 5 7 HELIX 7 7 ASP A 239 ALA A 244 1 6 HELIX 8 8 GLU A 308 ASP A 322 1 15 HELIX 9 9 THR A 330 LEU A 341 1 12 HELIX 10 10 THR A 346 GLU A 356 1 11 HELIX 11 11 PHE A 367 ASP A 380 1 14 HELIX 12 12 SER A 383 ASP A 395 1 13 HELIX 13 13 ALA A 404 LEU A 414 1 11 HELIX 14 14 THR A 419 ASP A 431 1 13 HELIX 15 15 TYR A 440 MET A 447 1 8 SHEET 1 A12 VAL A 62 ASP A 67 0 SHEET 2 A12 GLY A 72 ASN A 82 -1 O LYS A 74 N LYS A 65 SHEET 3 A12 VAL A 88 PRO A 99 -1 O HIS A 93 N PHE A 77 SHEET 4 A12 TYR A 249 PHE A 257 -1 O ILE A 250 N THR A 98 SHEET 5 A12 ASN A 262 GLU A 272 -1 O THR A 265 N ARG A 253 SHEET 6 A12 THR A 275 ILE A 285 -1 O GLU A 281 N ARG A 266 SHEET 7 A12 VAL A 169 VAL A 179 1 N GLU A 174 O ASN A 278 SHEET 8 A12 HIS A 182 ASP A 193 -1 O GLY A 192 N VAL A 169 SHEET 9 A12 LYS A 198 CYS A 205 -1 O ILE A 204 N SER A 187 SHEET 10 A12 HIS A 129 ALA A 139 -1 N LEU A 132 O LEU A 201 SHEET 11 A12 HIS A 111 SER A 120 -1 N GLN A 116 O PHE A 135 SHEET 12 A12 VAL A 62 ASP A 67 -1 N ILE A 64 O HIS A 111 SHEET 1 B 2 THR A 328 ILE A 329 0 SHEET 2 B 2 ILE A 365 ASP A 366 -1 O ILE A 365 N ILE A 329 SHEET 1 C 2 TYR A 401 SER A 403 0 SHEET 2 C 2 GLN A 437 ASN A 439 -1 O VAL A 438 N ILE A 402 LINK C LEU A 221 N1 CRO A 222 1555 1555 1.61 LINK C3 CRO A 222 N VAL A 225 1555 1555 1.94 LINK OD1 ASP A 322 CA CA A 501 1555 1555 2.23 LINK O TYR A 401 CA CA A 503 1555 1555 2.26 LINK OD1 ASP A 435 CA CA A 504 1555 1555 2.26 LINK OD1 ASP A 358 CA CA A 502 1555 1555 2.26 LINK OD1 ASP A 431 CA CA A 504 1555 1555 2.30 LINK CA CA A 504 O HOH A 616 1555 1555 2.33 LINK OD1 ASP A 362 CA CA A 502 1555 1555 2.33 LINK O THR A 364 CA CA A 502 1555 1555 2.34 LINK OD1 ASP A 326 CA CA A 501 1555 1555 2.37 LINK OE2 GLU A 333 CA CA A 501 1555 1555 2.37 LINK OD1 ASP A 360 CA CA A 502 1555 1555 2.37 LINK O THR A 328 CA CA A 501 1555 1555 2.37 LINK O GLN A 437 CA CA A 504 1555 1555 2.39 LINK OD1 ASP A 324 CA CA A 501 1555 1555 2.40 LINK CA CA A 502 O HOH A 609 1555 1555 2.40 LINK OD1 ASN A 399 CA CA A 503 1555 1555 2.42 LINK OD1 ASP A 433 CA CA A 504 1555 1555 2.44 LINK OE1 GLU A 406 CA CA A 503 1555 1555 2.44 LINK OD1 ASP A 395 CA CA A 503 1555 1555 2.45 LINK CA CA A 501 O HOH A 629 1555 1555 2.51 LINK OE2 GLU A 406 CA CA A 503 1555 1555 2.52 LINK OE2 GLU A 369 CA CA A 502 1555 1555 2.52 LINK OD1 ASP A 397 CA CA A 503 1555 1555 2.55 LINK OE2 GLU A 442 CA CA A 504 1555 1555 2.57 LINK OE1 GLU A 333 CA CA A 501 1555 1555 2.57 LINK CA CA A 503 O HOH A 727 1555 1555 2.58 LINK OE1 GLU A 442 CA CA A 504 1555 1555 2.60 LINK OE1 GLU A 369 CA CA A 502 1555 1555 2.64 CISPEP 1 MET A 245 PRO A 246 0 13.70 SITE 1 AC1 6 ASP A 322 ASP A 324 ASP A 326 THR A 328 SITE 2 AC1 6 GLU A 333 HOH A 629 SITE 1 AC2 6 ASP A 358 ASP A 360 ASP A 362 THR A 364 SITE 2 AC2 6 GLU A 369 HOH A 609 SITE 1 AC3 6 ASP A 395 ASP A 397 ASN A 399 TYR A 401 SITE 2 AC3 6 GLU A 406 HOH A 727 SITE 1 AC4 6 ASP A 431 ASP A 433 ASP A 435 GLN A 437 SITE 2 AC4 6 GLU A 442 HOH A 616 CRYST1 120.021 120.021 96.876 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008332 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010322 0.00000