HEADER HYDROLASE 04-JAN-13 4IN9 TITLE STRUCTURE OF KARILYSIN MMP-LIKE CATALYTIC DOMAIN IN COMPLEX WITH TITLE 2 INHIBITORY TETRAPEPTIDE SWFP COMPND MOL_ID: 1; COMPND 2 MOLECULE: KARILYSIN PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 35-200; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE SER-TRP-PHE-PRO; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TANNERELLA FORSYTHIA; SOURCE 3 ORGANISM_TAXID: 28112; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 OTHER_DETAILS: SYNTHETIC PEPTIDE ARISING FROM PHAGE-DISPLAY SOURCE 13 SCREENING KEYWDS MATRIXIN, METALLOPEPTIDASE, METALLOPROTEASE, HYDROLYTIC ENZYME, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.GUEVARA,M.KSIAZEK,P.D.SKOTTRUP,N.CERDA-COSTA,S.TRILLO-MUYO,I.DE AUTHOR 2 DIEGO,E.RIISE,J.POTEMPA,F.X.GOMIS-RUTH REVDAT 4 20-SEP-23 4IN9 1 REMARK LINK REVDAT 3 15-NOV-17 4IN9 1 SOURCE REMARK REVDAT 2 19-JUN-13 4IN9 1 JRNL REVDAT 1 15-MAY-13 4IN9 0 JRNL AUTH T.GUEVARA,M.KSIAZEK,P.D.SKOTTRUP,N.CERDA-COSTA, JRNL AUTH 2 S.TRILLO-MUYO,I.DE DIEGO,E.RIISE,J.POTEMPA,F.X.GOMIS-RUTH JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF THE TANNERELLA JRNL TITL 2 FORSYTHIA MATRIX METALLOPEPTIDASE KARILYSIN IN COMPLEX WITH JRNL TITL 3 A TETRAPEPTIDIC INHIBITOR. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 472 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23695557 JRNL DOI 10.1107/S1744309113007392 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.CERDA-COSTA,T.GUEVARA,A.Y.KARIM,M.KSIAZEK,K.A.NGUYEN, REMARK 1 AUTH 2 J.L.AROLAS,J.POTEMPA,F.X.GOMIS-RUTH REMARK 1 TITL THE STRUCTURE OF THE CATALYTIC DOMAIN OF TANNERELLA REMARK 1 TITL 2 FORSYTHIA KARILYSIN REVEALS IT IS A BACTERIAL XENOLOGUE OF REMARK 1 TITL 3 ANIMAL MATRIX METALLOPROTEINASES. REMARK 1 REF MOL.MICROBIOL. V. 79 119 2011 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 21166898 REMARK 1 DOI 10.1111/J.1365-2958.2010.07434.X REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1335 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2919 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2071 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2760 REMARK 3 BIN R VALUE (WORKING SET) : 0.2069 REMARK 3 BIN FREE R VALUE : 0.2107 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.45 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 159 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59450 REMARK 3 B22 (A**2) : 0.59450 REMARK 3 B33 (A**2) : -1.18910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.137 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.064 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1419 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1924 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 608 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 34 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 199 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1419 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 169 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 11 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1813 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.92 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.18 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|35 - A|200 } REMARK 3 ORIGIN FOR THE GROUP (A): 98.9018 109.4580 -15.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.0059 T22: 0.0018 REMARK 3 T33: -0.0031 T12: -0.0038 REMARK 3 T13: -0.0068 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.5142 L22: 0.4007 REMARK 3 L33: 0.5029 L12: 0.0043 REMARK 3 L13: 0.0092 L23: -0.0310 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: 0.0142 S13: 0.0283 REMARK 3 S21: -0.0122 S22: -0.0047 S23: 0.0402 REMARK 3 S31: -0.0545 S32: -0.0051 S33: 0.0075 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|1 - B|4 } REMARK 3 ORIGIN FOR THE GROUP (A): 111.4900 113.4250 -12.5512 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.0173 REMARK 3 T33: 0.0063 T12: -0.0488 REMARK 3 T13: -0.0214 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.2519 L12: -0.5734 REMARK 3 L13: 0.5512 L23: 0.2048 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0413 S13: 0.0378 REMARK 3 S21: 0.0471 S22: 0.0226 S23: -0.0543 REMARK 3 S31: -0.1117 S32: 0.1037 S33: -0.0297 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26344 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FOURIER SYNTHESIS WITH BUSTER/TNT REMARK 200 STARTING MODEL: 2XS4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BEST CRYSTALS WERE OBTAINED AT 20 REMARK 280 DEGREES FROM 1:1 MICROL DROPS WITH COMPLEX SOLUTION (8MG/ML IN REMARK 280 5MM TRIS HCL PH8, 5MM CALCIUM CHLORIDE, 0.02% SODIUM AZIDE) AND REMARK 280 0.4M SODIUM/POTASSIUM TARTRATE AS RESERVOIR SOLUTION. CRYSTALS REMARK 280 WERE CRYO-PROTECTED BY IMMERSION IN CRYO-SOLUTION (0.32M SODIUM/ REMARK 280 POTASSIUM TARTRATE, 25%[V/V] GLYCEROL), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.02500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.02500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.72000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.02500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.02500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.72000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 43.02500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 43.02500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.72000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 43.02500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 43.02500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 HIS A 57 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 136 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 112 -61.89 -102.19 REMARK 500 LEU A 115 -61.19 67.61 REMARK 500 PRO A 175 32.87 -86.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 75 O REMARK 620 2 SER A 75 OG 60.7 REMARK 620 3 SER A 78 O 70.9 124.0 REMARK 620 4 LEU A 80 O 92.3 55.4 103.1 REMARK 620 5 HOH A 536 O 75.6 63.4 129.8 114.7 REMARK 620 6 HOH A 537 O 120.4 63.9 167.8 73.1 61.1 REMARK 620 7 HOH A 538 O 152.0 147.3 84.3 106.3 113.4 85.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 ASP A 104 OD2 105.5 REMARK 620 3 HIS A 117 NE2 118.9 119.1 REMARK 620 4 HIS A 133 ND1 101.4 95.5 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 108 O REMARK 620 2 GOL A 307 O3 110.7 REMARK 620 3 HOH A 427 O 94.0 79.9 REMARK 620 4 HOH A 478 O 172.2 77.1 86.6 REMARK 620 5 HOH A 548 O 89.4 157.7 89.6 82.8 REMARK 620 6 HOH A 595 O 85.0 104.9 175.2 93.8 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 HIS A 159 NE2 94.6 REMARK 620 3 HIS A 165 NE2 111.2 92.2 REMARK 620 4 SER B 1 N 115.8 93.6 131.9 REMARK 620 5 SER B 1 O 96.7 167.5 88.9 76.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XS3 RELATED DB: PDB REMARK 900 SAME PROTEIN REMARK 900 RELATED ID: 2XS4 RELATED DB: PDB REMARK 900 SAME PROTEIN DBREF 4IN9 A 35 200 UNP D0EM77 D0EM77_BACFO 35 200 DBREF 4IN9 B 1 4 PDB 4IN9 4IN9 1 4 SEQRES 1 A 166 TYR VAL LEU GLN GLY SER LYS TRP ASN LYS THR THR LEU SEQRES 2 A 166 LYS TYR TYR ILE TYR ASN SER SER SER HIS LEU THR THR SEQRES 3 A 166 THR GLU ARG GLU ASN ALA ILE ARG SER ALA PHE ALA LEU SEQRES 4 A 166 TRP SER ASP LYS SER THR LEU SER PHE ILE GLN VAL TYR SEQRES 5 A 166 ASN PRO ASN GLN ALA ASP ILE LYS ILE LYS TRP GLU LYS SEQRES 6 A 166 GLY ASN HIS GLY ASP GLY TYR PRO PHE ASP GLY ASN THR SEQRES 7 A 166 GLY ILE LEU ALA HIS ALA PHE TYR PRO PRO PRO ALA GLY SEQRES 8 A 166 GLY ASN TYR ALA GLY HIS LEU HIS PHE ASP ASP ASP GLU SEQRES 9 A 166 ASN TRP SER ILE ASN GLY SER GLY ILE ASP LEU ILE THR SEQRES 10 A 166 VAL ALA ALA HIS GLU ILE GLY HIS LEU LEU GLY ILE GLU SEQRES 11 A 166 HIS SER ASN VAL SER SER ALA LEU MET TYR PRO TYR TYR SEQRES 12 A 166 THR GLY ILE LYS ARG GLN LEU ASP ASN ASP ASP CYS LEU SEQRES 13 A 166 ALA VAL TRP ASP LEU TYR GLY TYR PRO PHE SEQRES 1 B 4 SER TRP PHE PRO HET ZN A 301 1 HET ZN A 302 1 HET K A 303 1 HET NA A 304 1 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 6 HET GOL A 308 6 HET GOL A 309 6 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 5 K K 1+ FORMUL 6 NA NA 1+ FORMUL 7 GOL 5(C3 H8 O3) FORMUL 12 HOH *208(H2 O) HELIX 1 1 THR A 59 LYS A 77 1 19 HELIX 2 2 ASN A 87 ALA A 91 5 5 HELIX 3 3 GLY A 125 ALA A 129 5 5 HELIX 4 4 LEU A 149 GLY A 162 1 14 HELIX 5 5 ASP A 185 GLY A 197 1 13 SHEET 1 A 5 SER A 81 GLN A 84 0 SHEET 2 A 5 THR A 46 ILE A 51 1 N LEU A 47 O SER A 81 SHEET 3 A 5 ILE A 93 GLU A 98 1 O ILE A 95 N TYR A 50 SHEET 4 A 5 HIS A 131 ASP A 135 1 O LEU A 132 N LYS A 94 SHEET 5 A 5 ALA A 116 ALA A 118 -1 N HIS A 117 O HIS A 133 SHEET 1 B 2 TRP A 140 SER A 141 0 SHEET 2 B 2 ILE A 147 ASP A 148 1 O ILE A 147 N SER A 141 LINK O SER A 75 K K A 303 1555 1555 2.66 LINK OG ASER A 75 K K A 303 1555 1555 3.30 LINK O SER A 78 K K A 303 1555 1555 2.79 LINK O LEU A 80 K K A 303 1555 1555 2.72 LINK NE2 HIS A 102 ZN ZN A 302 1555 1555 1.96 LINK OD2 ASP A 104 ZN ZN A 302 1555 1555 1.95 LINK O PHE A 108 NA NA A 304 1555 1555 2.52 LINK NE2 HIS A 117 ZN ZN A 302 1555 1555 1.97 LINK ND1 HIS A 133 ZN ZN A 302 1555 1555 2.01 LINK NE2 HIS A 155 ZN ZN A 301 1555 1555 2.04 LINK NE2 HIS A 159 ZN ZN A 301 1555 1555 2.14 LINK NE2 HIS A 165 ZN ZN A 301 1555 1555 2.07 LINK ZN ZN A 301 N SER B 1 1555 1555 2.16 LINK ZN ZN A 301 O SER B 1 1555 1555 2.23 LINK K K A 303 O HOH A 536 1555 1555 2.66 LINK K K A 303 O HOH A 537 1555 1555 3.04 LINK K K A 303 O HOH A 538 1555 1555 2.75 LINK NA NA A 304 O3 GOL A 307 1555 1555 2.49 LINK NA NA A 304 O HOH A 427 1555 1555 2.73 LINK NA NA A 304 O HOH A 478 1555 1555 2.61 LINK NA NA A 304 O HOH A 548 1555 1555 2.55 LINK NA NA A 304 O HOH A 595 1555 1555 2.66 CISPEP 1 PRO A 122 PRO A 123 0 6.48 SITE 1 AC1 4 HIS A 155 HIS A 159 HIS A 165 SER B 1 SITE 1 AC2 4 HIS A 102 ASP A 104 HIS A 117 HIS A 133 SITE 1 AC3 6 SER A 75 SER A 78 LEU A 80 HOH A 536 SITE 2 AC3 6 HOH A 537 HOH A 538 SITE 1 AC4 6 PHE A 108 GOL A 307 HOH A 427 HOH A 478 SITE 2 AC4 6 HOH A 548 HOH A 595 SITE 1 AC5 5 SER A 75 SER A 81 PHE A 82 HOH A 438 SITE 2 AC5 5 HOH A 535 SITE 1 AC6 6 ALA A 118 GLN A 183 HOH A 569 HOH A 594 SITE 2 AC6 6 HOH A 605 SER B 1 SITE 1 AC7 5 ASP A 135 ASP A 137 GLU A 138 NA A 304 SITE 2 AC7 5 HOH A 596 SITE 1 AC8 8 TYR A 52 LYS A 94 LYS A 96 HIS A 131 SITE 2 AC8 8 LEU A 132 HIS A 133 HOH A 547 HOH A 600 SITE 1 AC9 8 ASP A 104 GLY A 105 TYR A 128 SER A 169 SITE 2 AC9 8 SER A 170 HOH A 487 HOH A 513 HOH A 580 CRYST1 86.050 86.050 49.440 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020227 0.00000