HEADER HYDROLASE 14-JAN-13 4IQY TITLE CRYSTAL STRUCTURE OF THE HUMAN PROTEIN-PROXIMAL ADP-RIBOSYL-HYDROLASE TITLE 2 MACROD2 CAVEAT 4IQY CHIRALITY ERROR AT C1D ATOM OF APR 301. COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-ACETYL-ADP-RIBOSE DEACETYLASE MACROD2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MACRODOMAIN (UNP RESIDUES 7-243); COMPND 5 SYNONYM: MACRO DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MACROD2, C20ORF133; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-MCN 6HISTEV KEYWDS MACRODOMAIN, HYDROLASE, ADP-RIBOSE BINDING, ADP-RIBOSYLATION, KEYWDS 2 NUCLEAR/CYTOPLASMIC EXPDTA X-RAY DIFFRACTION AUTHOR G.JANKEVICIUS,M.HASSLER,B.GOLIA,V.RYBIN,M.ZACHARIAS,G.TIMINSZKY, AUTHOR 2 A.G.LADURNER REVDAT 3 20-SEP-23 4IQY 1 REMARK SEQADV HETSYN LINK REVDAT 2 17-APR-13 4IQY 1 JRNL REVDAT 1 06-MAR-13 4IQY 0 JRNL AUTH G.JANKEVICIUS,M.HASSLER,B.GOLIA,V.RYBIN,M.ZACHARIAS, JRNL AUTH 2 G.TIMINSZKY,A.G.LADURNER JRNL TITL A FAMILY OF MACRODOMAIN PROTEINS REVERSES CELLULAR JRNL TITL 2 MONO-ADP-RIBOSYLATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 508 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 23474712 JRNL DOI 10.1038/NSMB.2523 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 60028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8043 - 4.3421 0.92 2731 150 0.1501 0.1713 REMARK 3 2 4.3421 - 3.4468 0.93 2736 137 0.1346 0.1492 REMARK 3 3 3.4468 - 3.0112 0.92 2696 153 0.1432 0.1631 REMARK 3 4 3.0112 - 2.7359 0.91 2678 131 0.1552 0.1999 REMARK 3 5 2.7359 - 2.5398 0.91 2701 140 0.1609 0.1801 REMARK 3 6 2.5398 - 2.3901 0.92 2702 137 0.1584 0.1742 REMARK 3 7 2.3901 - 2.2704 0.91 2694 151 0.1612 0.2160 REMARK 3 8 2.2704 - 2.1715 0.91 2722 138 0.1516 0.1746 REMARK 3 9 2.1715 - 2.0879 0.92 2707 150 0.1553 0.2038 REMARK 3 10 2.0879 - 2.0159 0.88 2599 142 0.1616 0.1974 REMARK 3 11 2.0159 - 1.9529 0.90 2644 122 0.1648 0.2023 REMARK 3 12 1.9529 - 1.8970 0.91 2678 168 0.1597 0.1827 REMARK 3 13 1.8970 - 1.8471 0.90 2585 155 0.1634 0.2032 REMARK 3 14 1.8471 - 1.8020 0.89 2665 127 0.1638 0.1880 REMARK 3 15 1.8020 - 1.7611 0.88 2598 141 0.1710 0.2064 REMARK 3 16 1.7611 - 1.7236 0.87 2549 123 0.1813 0.2147 REMARK 3 17 1.7236 - 1.6891 0.88 2606 154 0.1827 0.2194 REMARK 3 18 1.6891 - 1.6572 0.84 2505 137 0.1833 0.1950 REMARK 3 19 1.6572 - 1.6276 0.78 2261 106 0.2030 0.2733 REMARK 3 20 1.6276 - 1.6000 0.80 2396 118 0.2151 0.2345 REMARK 3 21 1.6000 - 1.5742 0.79 2323 137 0.2276 0.3164 REMARK 3 22 1.5742 - 1.5500 0.76 2221 114 0.2572 0.2910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3622 REMARK 3 ANGLE : 1.208 4906 REMARK 3 CHIRALITY : 0.078 551 REMARK 3 PLANARITY : 0.004 611 REMARK 3 DIHEDRAL : 21.768 1432 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.8389 6.3717 19.0935 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.1148 REMARK 3 T33: 0.1163 T12: -0.0025 REMARK 3 T13: -0.0084 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: -0.0417 L22: 0.1547 REMARK 3 L33: 1.2180 L12: 0.0952 REMARK 3 L13: -0.4690 L23: -0.5108 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0290 S13: 0.0053 REMARK 3 S21: -0.0258 S22: 0.0313 S23: 0.0181 REMARK 3 S31: 0.0582 S32: -0.0550 S33: -0.0233 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97633 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72823 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 46.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2X47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.1M HEPES, 0.1M REMARK 280 MGFORMATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 HIS A 5 REMARK 465 MET A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 9 REMARK 465 GLY A 51 REMARK 465 GLN A 52 REMARK 465 ASN A 53 REMARK 465 ASP A 54 REMARK 465 GLU A 55 REMARK 465 GLU A 56 REMARK 465 THR A 61 REMARK 465 SER A 62 REMARK 465 GLN A 63 REMARK 465 VAL A 64 REMARK 465 LYS A 65 REMARK 465 VAL A 242 REMARK 465 ASP A 243 REMARK 465 GLY B 4 REMARK 465 HIS B 5 REMARK 465 MET B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 48 REMARK 465 GLY B 49 REMARK 465 LYS B 50 REMARK 465 GLY B 51 REMARK 465 GLN B 52 REMARK 465 ASN B 53 REMARK 465 ASP B 54 REMARK 465 GLU B 55 REMARK 465 GLU B 56 REMARK 465 ASN B 57 REMARK 465 THR B 58 REMARK 465 GLN B 59 REMARK 465 GLU B 60 REMARK 465 VAL B 242 REMARK 465 ASP B 243 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 50 CB CG CD CE NZ REMARK 470 THR A 58 OG1 CG2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 SER A 241 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 194 O HOH B 663 2.06 REMARK 500 O HOH B 534 O HOH B 598 2.10 REMARK 500 O HOH B 590 O HOH B 635 2.12 REMARK 500 O HOH A 610 O HOH B 646 2.13 REMARK 500 O HOH B 672 O HOH B 677 2.14 REMARK 500 O HOH B 520 O HOH B 617 2.15 REMARK 500 O HOH B 631 O HOH B 635 2.16 REMARK 500 O HOH B 515 O HOH B 637 2.17 REMARK 500 O HOH B 442 O HOH B 663 2.18 REMARK 500 O HOH A 550 O HOH A 556 2.18 REMARK 500 O HOH A 614 O HOH A 615 2.18 REMARK 500 O HOH A 620 O HOH A 622 2.18 REMARK 500 O HOH B 663 O HOH B 666 2.19 REMARK 500 O HOH A 587 O HOH A 630 2.19 REMARK 500 O HOH A 629 O HOH A 650 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 57 O HOH B 663 1554 2.17 REMARK 500 O HOH A 569 O HOH B 637 1564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 134 -119.44 51.87 REMARK 500 ARG A 150 65.07 -107.83 REMARK 500 SER A 186 -7.29 74.98 REMARK 500 LEU B 95 17.29 58.18 REMARK 500 TYR B 134 -117.75 51.76 REMARK 500 SER B 186 -4.63 74.92 REMARK 500 PHE B 224 -52.25 -121.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 215 OE1 REMARK 620 2 HOH A 458 O 90.6 REMARK 620 3 HOH A 474 O 171.3 89.6 REMARK 620 4 HOH A 521 O 93.1 84.9 78.2 REMARK 620 5 HOH A 610 O 88.6 173.3 90.2 88.5 REMARK 620 6 HOH A 623 O 91.0 91.5 97.7 174.6 95.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 215 OE1 REMARK 620 2 HOH B 460 O 172.7 REMARK 620 3 HOH B 476 O 88.0 94.8 REMARK 620 4 HOH B 483 O 82.8 90.5 89.4 REMARK 620 5 HOH B 646 O 85.0 91.0 167.0 78.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AR6 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AR6 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 DBREF 4IQY A 7 243 UNP A1Z1Q3 MACD2_HUMAN 7 243 DBREF 4IQY B 7 243 UNP A1Z1Q3 MACD2_HUMAN 7 243 SEQADV 4IQY GLY A 4 UNP A1Z1Q3 EXPRESSION TAG SEQADV 4IQY HIS A 5 UNP A1Z1Q3 EXPRESSION TAG SEQADV 4IQY MET A 6 UNP A1Z1Q3 EXPRESSION TAG SEQADV 4IQY GLY B 4 UNP A1Z1Q3 EXPRESSION TAG SEQADV 4IQY HIS B 5 UNP A1Z1Q3 EXPRESSION TAG SEQADV 4IQY MET B 6 UNP A1Z1Q3 EXPRESSION TAG SEQRES 1 A 240 GLY HIS MET LYS LYS LYS VAL TRP ARG GLU GLU LYS GLU SEQRES 2 A 240 ARG LEU LEU LYS MET THR LEU GLU GLU ARG ARG LYS GLU SEQRES 3 A 240 TYR LEU ARG ASP TYR ILE PRO LEU ASN SER ILE LEU SER SEQRES 4 A 240 TRP LYS GLU GLU MET LYS GLY LYS GLY GLN ASN ASP GLU SEQRES 5 A 240 GLU ASN THR GLN GLU THR SER GLN VAL LYS LYS SER LEU SEQRES 6 A 240 THR GLU LYS VAL SER LEU TYR ARG GLY ASP ILE THR LEU SEQRES 7 A 240 LEU GLU VAL ASP ALA ILE VAL ASN ALA ALA ASN ALA SER SEQRES 8 A 240 LEU LEU GLY GLY GLY GLY VAL ASP GLY CYS ILE HIS ARG SEQRES 9 A 240 ALA ALA GLY PRO CYS LEU LEU ALA GLU CYS ARG ASN LEU SEQRES 10 A 240 ASN GLY CYS ASP THR GLY HIS ALA LYS ILE THR CYS GLY SEQRES 11 A 240 TYR ASP LEU PRO ALA LYS TYR VAL ILE HIS THR VAL GLY SEQRES 12 A 240 PRO ILE ALA ARG GLY HIS ILE ASN GLY SER HIS LYS GLU SEQRES 13 A 240 ASP LEU ALA ASN CYS TYR LYS SER SER LEU LYS LEU VAL SEQRES 14 A 240 LYS GLU ASN ASN ILE ARG SER VAL ALA PHE PRO CYS ILE SEQRES 15 A 240 SER THR GLY ILE TYR GLY PHE PRO ASN GLU PRO ALA ALA SEQRES 16 A 240 VAL ILE ALA LEU ASN THR ILE LYS GLU TRP LEU ALA LYS SEQRES 17 A 240 ASN HIS HIS GLU VAL ASP ARG ILE ILE PHE CYS VAL PHE SEQRES 18 A 240 LEU GLU VAL ASP PHE LYS ILE TYR LYS LYS LYS MET ASN SEQRES 19 A 240 GLU PHE PHE SER VAL ASP SEQRES 1 B 240 GLY HIS MET LYS LYS LYS VAL TRP ARG GLU GLU LYS GLU SEQRES 2 B 240 ARG LEU LEU LYS MET THR LEU GLU GLU ARG ARG LYS GLU SEQRES 3 B 240 TYR LEU ARG ASP TYR ILE PRO LEU ASN SER ILE LEU SER SEQRES 4 B 240 TRP LYS GLU GLU MET LYS GLY LYS GLY GLN ASN ASP GLU SEQRES 5 B 240 GLU ASN THR GLN GLU THR SER GLN VAL LYS LYS SER LEU SEQRES 6 B 240 THR GLU LYS VAL SER LEU TYR ARG GLY ASP ILE THR LEU SEQRES 7 B 240 LEU GLU VAL ASP ALA ILE VAL ASN ALA ALA ASN ALA SER SEQRES 8 B 240 LEU LEU GLY GLY GLY GLY VAL ASP GLY CYS ILE HIS ARG SEQRES 9 B 240 ALA ALA GLY PRO CYS LEU LEU ALA GLU CYS ARG ASN LEU SEQRES 10 B 240 ASN GLY CYS ASP THR GLY HIS ALA LYS ILE THR CYS GLY SEQRES 11 B 240 TYR ASP LEU PRO ALA LYS TYR VAL ILE HIS THR VAL GLY SEQRES 12 B 240 PRO ILE ALA ARG GLY HIS ILE ASN GLY SER HIS LYS GLU SEQRES 13 B 240 ASP LEU ALA ASN CYS TYR LYS SER SER LEU LYS LEU VAL SEQRES 14 B 240 LYS GLU ASN ASN ILE ARG SER VAL ALA PHE PRO CYS ILE SEQRES 15 B 240 SER THR GLY ILE TYR GLY PHE PRO ASN GLU PRO ALA ALA SEQRES 16 B 240 VAL ILE ALA LEU ASN THR ILE LYS GLU TRP LEU ALA LYS SEQRES 17 B 240 ASN HIS HIS GLU VAL ASP ARG ILE ILE PHE CYS VAL PHE SEQRES 18 B 240 LEU GLU VAL ASP PHE LYS ILE TYR LYS LYS LYS MET ASN SEQRES 19 B 240 GLU PHE PHE SER VAL ASP HET AR6 A 301 36 HET MG A 302 1 HET AR6 B 301 36 HET MG B 302 1 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM MG MAGNESIUM ION HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 3 AR6 2(C15 H23 N5 O14 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *531(H2 O) HELIX 1 1 VAL A 10 LYS A 20 1 11 HELIX 2 2 THR A 22 ARG A 27 1 6 HELIX 3 3 ASN A 38 ILE A 40 5 3 HELIX 4 4 SER A 42 MET A 47 1 6 HELIX 5 5 ASP A 78 THR A 80 5 3 HELIX 6 6 GLY A 99 GLY A 110 1 12 HELIX 7 7 GLY A 110 ARG A 118 1 9 HELIX 8 8 SER A 156 ASN A 175 1 20 HELIX 9 9 PRO A 193 HIS A 213 1 21 HELIX 10 10 HIS A 214 VAL A 216 5 3 HELIX 11 11 LEU A 225 SER A 241 1 17 HELIX 12 12 TRP B 11 LYS B 20 1 10 HELIX 13 13 THR B 22 LYS B 28 1 7 HELIX 14 14 ASN B 38 ILE B 40 5 3 HELIX 15 15 SER B 42 MET B 47 1 6 HELIX 16 16 ASP B 78 THR B 80 5 3 HELIX 17 17 GLY B 99 GLY B 110 1 12 HELIX 18 18 GLY B 110 ASN B 119 1 10 HELIX 19 19 ASN B 154 ASN B 175 1 22 HELIX 20 20 PRO B 193 HIS B 213 1 21 HELIX 21 21 HIS B 214 VAL B 216 5 3 HELIX 22 22 LEU B 225 SER B 241 1 17 SHEET 1 A 2 ILE A 35 PRO A 36 0 SHEET 2 A 2 LEU A 82 GLU A 83 1 O GLU A 83 N ILE A 35 SHEET 1 B 6 VAL A 72 ARG A 76 0 SHEET 2 B 6 ARG A 218 VAL A 223 1 O PHE A 221 N SER A 73 SHEET 3 B 6 SER A 179 PHE A 182 1 N VAL A 180 O ILE A 220 SHEET 4 B 6 ALA A 86 ALA A 91 1 N VAL A 88 O ALA A 181 SHEET 5 B 6 TYR A 140 VAL A 145 1 O ILE A 142 N ASN A 89 SHEET 6 B 6 ALA A 128 CYS A 132 -1 N LYS A 129 O HIS A 143 SHEET 1 C 2 ILE B 35 PRO B 36 0 SHEET 2 C 2 LEU B 82 GLU B 83 1 O GLU B 83 N ILE B 35 SHEET 1 D 6 VAL B 72 ARG B 76 0 SHEET 2 D 6 ARG B 218 VAL B 223 1 O PHE B 221 N SER B 73 SHEET 3 D 6 SER B 179 PHE B 182 1 N VAL B 180 O ILE B 220 SHEET 4 D 6 ALA B 86 ALA B 91 1 N VAL B 88 O ALA B 181 SHEET 5 D 6 TYR B 140 VAL B 145 1 O ILE B 142 N ASN B 89 SHEET 6 D 6 ALA B 128 CYS B 132 -1 N LYS B 129 O HIS B 143 LINK OE1 GLU A 215 MG MG A 302 1555 1555 2.01 LINK MG MG A 302 O HOH A 458 1555 1555 2.01 LINK MG MG A 302 O HOH A 474 1555 1555 2.07 LINK MG MG A 302 O HOH A 521 1555 1555 2.53 LINK MG MG A 302 O HOH A 610 1555 1555 1.94 LINK MG MG A 302 O HOH A 623 1555 1555 2.16 LINK OE1 GLU B 215 MG MG B 302 1555 1555 1.98 LINK MG MG B 302 O HOH B 460 1555 1555 2.13 LINK MG MG B 302 O HOH B 476 1555 1555 1.94 LINK MG MG B 302 O HOH B 483 1555 1555 2.26 LINK MG MG B 302 O HOH B 646 1555 1555 1.96 SITE 1 AC1 30 GLY A 77 ASP A 78 ILE A 79 ALA A 90 SITE 2 AC1 30 ASN A 92 GLY A 97 GLY A 99 GLY A 100 SITE 3 AC1 30 VAL A 101 ASP A 102 CYS A 104 CYS A 184 SITE 4 AC1 30 SER A 186 THR A 187 GLY A 188 ILE A 189 SITE 5 AC1 30 TYR A 190 PHE A 224 LEU A 225 HOH A 401 SITE 6 AC1 30 HOH A 402 HOH A 404 HOH A 409 HOH A 417 SITE 7 AC1 30 HOH A 427 HOH A 429 HOH A 449 HOH A 489 SITE 8 AC1 30 HOH A 491 HOH B 425 SITE 1 AC2 6 GLU A 215 HOH A 458 HOH A 474 HOH A 521 SITE 2 AC2 6 HOH A 610 HOH A 623 SITE 1 AC3 30 HOH A 421 ASP B 78 ILE B 79 ALA B 90 SITE 2 AC3 30 ASN B 92 GLY B 97 GLY B 98 GLY B 99 SITE 3 AC3 30 GLY B 100 VAL B 101 ASP B 102 CYS B 104 SITE 4 AC3 30 CYS B 184 SER B 186 THR B 187 GLY B 188 SITE 5 AC3 30 ILE B 189 TYR B 190 PHE B 224 LEU B 225 SITE 6 AC3 30 HOH B 402 HOH B 403 HOH B 404 HOH B 415 SITE 7 AC3 30 HOH B 416 HOH B 417 HOH B 445 HOH B 459 SITE 8 AC3 30 HOH B 492 HOH B 521 SITE 1 AC4 5 GLU B 215 HOH B 460 HOH B 476 HOH B 483 SITE 2 AC4 5 HOH B 646 CRYST1 40.713 49.883 66.972 69.82 72.35 86.08 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024562 -0.001683 -0.007703 0.00000 SCALE2 0.000000 0.020094 -0.007290 0.00000 SCALE3 0.000000 0.000000 0.016669 0.00000