HEADER HYDROLASE/HYDROLASE INHIBITOR 16-JAN-13 4ISA TITLE CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI LPXC/BB-78485 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE COMPND 3 DEACETYLASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 714962; SOURCE 4 STRAIN: IHE3034 / EXPEC; SOURCE 5 GENE: LPXC, ECOK1_0097; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS LIPID A SYNTHESIS, LPXC, BAAB SANDWICH, DEACETYLATION, ANTIBIOTIC, KEYWDS 2 ACYL UDP-GLCNAC, HYDROXAMATE, BB-78485, HYDROLASE-HYDROLASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.-J.LEE,P.ZHOU REVDAT 4 28-FEB-24 4ISA 1 REMARK LINK REVDAT 3 15-NOV-17 4ISA 1 REMARK REVDAT 2 12-FEB-14 4ISA 1 JRNL REVDAT 1 30-OCT-13 4ISA 0 JRNL AUTH C.J.LEE,X.LIANG,R.GOPALASWAMY,J.NAJEEB,E.D.ARK,E.J.TOONE, JRNL AUTH 2 P.ZHOU JRNL TITL STRUCTURAL BASIS OF THE PROMISCUOUS INHIBITOR SUSCEPTIBILITY JRNL TITL 2 OF ESCHERICHIA COLI LPXC. JRNL REF ACS CHEM.BIOL. V. 9 237 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24117400 JRNL DOI 10.1021/CB400067G REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 31167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.9849 - 3.9940 0.95 2675 142 0.1637 0.1580 REMARK 3 2 3.9940 - 3.1737 0.96 2669 137 0.1661 0.1912 REMARK 3 3 3.1737 - 2.7736 0.98 2663 164 0.1974 0.2428 REMARK 3 4 2.7736 - 2.5204 0.98 2707 139 0.1962 0.2355 REMARK 3 5 2.5204 - 2.3400 0.99 2678 162 0.1905 0.2068 REMARK 3 6 2.3400 - 2.2022 0.99 2696 139 0.1830 0.2304 REMARK 3 7 2.2022 - 2.0920 0.99 2706 135 0.1912 0.2443 REMARK 3 8 2.0920 - 2.0010 0.99 2728 136 0.1883 0.2570 REMARK 3 9 2.0010 - 1.9241 0.99 2686 138 0.1997 0.2518 REMARK 3 10 1.9241 - 1.8577 0.99 2714 144 0.2265 0.2419 REMARK 3 11 1.8577 - 1.8000 0.98 2668 141 0.2606 0.3438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 49.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.11680 REMARK 3 B22 (A**2) : -4.11680 REMARK 3 B33 (A**2) : 8.23360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2513 REMARK 3 ANGLE : 1.345 3378 REMARK 3 CHIRALITY : 0.201 370 REMARK 3 PLANARITY : 0.005 434 REMARK 3 DIHEDRAL : 12.817 904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1:118) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8574 -45.9022 -16.8070 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.1453 REMARK 3 T33: 0.1385 T12: 0.0157 REMARK 3 T13: 0.0094 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.1546 L22: 2.8100 REMARK 3 L33: 1.9268 L12: 0.5207 REMARK 3 L13: -0.0119 L23: -0.5144 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.0190 S13: 0.0391 REMARK 3 S21: 0.0342 S22: 0.0562 S23: 0.0864 REMARK 3 S31: 0.0479 S32: 0.0195 S33: -0.0162 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 119:148) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8143 -39.7330 2.1340 REMARK 3 T TENSOR REMARK 3 T11: 0.3225 T22: 0.2330 REMARK 3 T33: 0.2494 T12: 0.0634 REMARK 3 T13: 0.0626 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.1052 L22: 3.0843 REMARK 3 L33: 2.4366 L12: 1.5695 REMARK 3 L13: -0.3563 L23: 0.5671 REMARK 3 S TENSOR REMARK 3 S11: 0.3494 S12: -0.5686 S13: 0.1855 REMARK 3 S21: 0.7044 S22: -0.3196 S23: 0.3293 REMARK 3 S31: 0.0425 S32: -0.1646 S33: 0.0075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 149:191) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1347 -25.7275 -6.5635 REMARK 3 T TENSOR REMARK 3 T11: 0.3179 T22: 0.2625 REMARK 3 T33: 0.3566 T12: 0.0403 REMARK 3 T13: 0.0475 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 1.9608 L22: 1.3894 REMARK 3 L33: 2.4289 L12: 0.4803 REMARK 3 L13: -0.3206 L23: -0.7686 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: -0.3055 S13: 0.5317 REMARK 3 S21: 0.3831 S22: -0.0508 S23: 0.3693 REMARK 3 S31: -0.2453 S32: -0.0454 S33: 0.0642 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 192:233) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1163 -24.7280 -19.8134 REMARK 3 T TENSOR REMARK 3 T11: 0.1941 T22: 0.2043 REMARK 3 T33: 0.2478 T12: -0.0314 REMARK 3 T13: -0.0265 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.9893 L22: 2.4634 REMARK 3 L33: 1.4370 L12: 0.3352 REMARK 3 L13: -0.0977 L23: 0.5184 REMARK 3 S TENSOR REMARK 3 S11: -0.0702 S12: 0.1884 S13: 0.2480 REMARK 3 S21: -0.0088 S22: 0.0810 S23: -0.1949 REMARK 3 S31: -0.1013 S32: 0.1224 S33: -0.0167 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 234:285) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2070 -37.5619 -0.4997 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.2270 REMARK 3 T33: 0.1864 T12: 0.0069 REMARK 3 T13: 0.0372 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 2.1140 L22: 2.0948 REMARK 3 L33: 1.2632 L12: 0.6960 REMARK 3 L13: -0.4194 L23: -0.2486 REMARK 3 S TENSOR REMARK 3 S11: 0.0993 S12: -0.3046 S13: 0.0934 REMARK 3 S21: 0.4309 S22: -0.0999 S23: 0.2497 REMARK 3 S31: -0.0162 S32: -0.0038 S33: 0.0086 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 286:300) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9725 -40.3165 -2.3735 REMARK 3 T TENSOR REMARK 3 T11: 0.5618 T22: 0.5775 REMARK 3 T33: 0.7420 T12: 0.0895 REMARK 3 T13: 0.1117 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 7.2241 L22: 2.1289 REMARK 3 L33: 5.2167 L12: -1.5021 REMARK 3 L13: 2.5085 L23: -0.5124 REMARK 3 S TENSOR REMARK 3 S11: -0.4008 S12: 0.1433 S13: 1.4079 REMARK 3 S21: -0.2955 S22: 0.4595 S23: 0.7682 REMARK 3 S31: -0.5659 S32: -1.2877 S33: -0.0438 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ISA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.49133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.98267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.23700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.72833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.74567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1229 O HOH A 1277 1.98 REMARK 500 O HOH A 1113 O HOH A 1201 2.14 REMARK 500 O HOH A 1072 O HOH A 1284 2.14 REMARK 500 O HOH A 1193 O HOH A 1216 2.15 REMARK 500 O1 FMT A 409 O HOH A 1256 2.15 REMARK 500 O2 FMT A 405 O HOH A 1262 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 -1.79 70.44 REMARK 500 ASN A 97 44.83 -87.30 REMARK 500 MET A 104 -130.54 55.60 REMARK 500 SER A 107 -169.89 -115.30 REMARK 500 ASP A 219 -155.35 -99.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HIS A 238 NE2 92.2 REMARK 620 3 ASP A 242 OD1 101.2 99.6 REMARK 620 4 ASP A 242 OD2 154.5 89.6 53.6 REMARK 620 5 GVR A 402 O28 104.7 92.2 151.1 100.6 REMARK 620 6 GVR A 402 O30 98.1 164.6 89.7 86.0 74.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GVR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GVR A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D1D A 421 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IS9 RELATED DB: PDB DBREF 4ISA A 1 300 UNP D5CV28 D5CV28_ECOKI 1 300 SEQRES 1 A 300 MET ILE LYS GLN ARG THR LEU LYS ARG ILE VAL GLN ALA SEQRES 2 A 300 THR GLY VAL GLY LEU HIS THR GLY LYS LYS VAL THR LEU SEQRES 3 A 300 THR LEU ARG PRO ALA PRO ALA ASN THR GLY VAL ILE TYR SEQRES 4 A 300 ARG ARG THR ASP LEU ASN PRO PRO VAL ASP PHE PRO ALA SEQRES 5 A 300 ASP ALA LYS SER VAL ARG ASP THR MET LEU CYS THR CYS SEQRES 6 A 300 LEU VAL ASN GLU HIS ASP VAL ARG ILE SER THR VAL GLU SEQRES 7 A 300 HIS LEU ASN ALA ALA LEU ALA GLY LEU GLY ILE ASP ASN SEQRES 8 A 300 ILE VAL ILE GLU VAL ASN ALA PRO GLU ILE PRO ILE MET SEQRES 9 A 300 ASP GLY SER ALA ALA PRO PHE VAL TYR LEU LEU LEU ASP SEQRES 10 A 300 ALA GLY ILE ASP GLU LEU ASN CYS ALA LYS LYS PHE VAL SEQRES 11 A 300 ARG ILE LYS GLU THR VAL ARG VAL GLU ASP GLY ASP LYS SEQRES 12 A 300 TRP ALA GLU PHE LYS PRO TYR ASN GLY PHE SER LEU ASP SEQRES 13 A 300 PHE THR ILE ASP PHE ASN HIS PRO ALA ILE ASP SER SER SEQRES 14 A 300 ASN GLN ARG TYR ALA MET ASN PHE SER ALA ASP ALA PHE SEQRES 15 A 300 MET ARG GLN ILE SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 A 300 ARG ASP ILE GLU TYR LEU GLN SER ARG GLY LEU CYS LEU SEQRES 17 A 300 GLY GLY SER PHE ASP CYS ALA ILE VAL VAL ASP ASP TYR SEQRES 18 A 300 ARG VAL LEU ASN GLU ASP GLY LEU ARG PHE GLU ASP GLU SEQRES 19 A 300 PHE VAL ARG HIS LYS MET LEU ASP ALA ILE GLY ASP LEU SEQRES 20 A 300 PHE MET CYS GLY HIS ASN ILE ILE GLY ALA PHE THR ALA SEQRES 21 A 300 TYR LYS SER GLY HIS ALA LEU ASN ASN LYS LEU LEU GLN SEQRES 22 A 300 ALA VAL LEU ALA LYS GLN GLU ALA TRP GLU TYR VAL THR SEQRES 23 A 300 PHE GLN ASP ASP ALA GLU LEU PRO LEU ALA PHE LYS ALA SEQRES 24 A 300 PRO HET ZN A 401 1 HET GVR A 402 30 HET GVR A 403 30 HET FMT A 404 3 HET FMT A 405 3 HET FMT A 406 3 HET FMT A 407 3 HET FMT A 408 3 HET FMT A 409 3 HET FMT A 410 3 HET FMT A 411 3 HET FMT A 412 3 HET FMT A 413 3 HET FMT A 414 3 HET FMT A 415 3 HET FMT A 416 3 HET FMT A 417 3 HET FMT A 418 3 HET FMT A 419 3 HET FMT A 420 3 HET D1D A 421 8 HETNAM ZN ZINC ION HETNAM GVR (2R)-N-HYDROXY-3-NAPHTHALEN-2-YL-2-[(NAPHTHALEN-2- HETNAM 2 GVR YLSULFONYL)AMINO]PROPANAMIDE HETNAM FMT FORMIC ACID HETNAM D1D (4S,5S)-1,2-DITHIANE-4,5-DIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GVR 2(C23 H20 N2 O4 S) FORMUL 5 FMT 17(C H2 O2) FORMUL 22 D1D C4 H8 O2 S2 FORMUL 23 HOH *310(H2 O) HELIX 1 1 ASP A 53 LYS A 55 5 3 HELIX 2 2 VAL A 77 GLY A 88 1 12 HELIX 3 3 ALA A 108 GLY A 119 1 12 HELIX 4 4 ASP A 167 ASN A 170 5 4 HELIX 5 5 SER A 178 ILE A 186 1 9 HELIX 6 6 MET A 195 ARG A 204 1 10 HELIX 7 7 SER A 211 ALA A 215 5 5 HELIX 8 8 ASP A 233 PHE A 248 1 16 HELIX 9 9 MET A 249 GLY A 251 5 3 HELIX 10 10 GLY A 264 LYS A 278 1 15 HELIX 11 11 ASP A 289 LEU A 293 5 5 HELIX 12 12 PRO A 294 LYS A 298 5 5 SHEET 1 A 2 LYS A 3 LEU A 7 0 SHEET 2 A 2 ILE A 120 ALA A 126 -1 O ASP A 121 N THR A 6 SHEET 1 B 5 VAL A 11 VAL A 16 0 SHEET 2 B 5 LYS A 23 PRO A 30 -1 O LEU A 26 N ALA A 13 SHEET 3 B 5 ILE A 92 VAL A 96 -1 O GLU A 95 N THR A 27 SHEET 4 B 5 VAL A 37 ARG A 41 1 N ILE A 38 O ILE A 94 SHEET 5 B 5 VAL A 48 PRO A 51 -1 O PHE A 50 N TYR A 39 SHEET 1 C 3 VAL A 57 ASP A 59 0 SHEET 2 C 3 THR A 64 VAL A 67 -1 O CYS A 65 N ARG A 58 SHEET 3 C 3 ARG A 73 SER A 75 -1 O ILE A 74 N LEU A 66 SHEET 1 D 5 VAL A 136 ASP A 140 0 SHEET 2 D 5 LYS A 143 LYS A 148 -1 O LYS A 143 N ASP A 140 SHEET 3 D 5 ILE A 254 TYR A 261 -1 O ALA A 257 N LYS A 148 SHEET 4 D 5 PHE A 153 THR A 158 1 N SER A 154 O PHE A 258 SHEET 5 D 5 ARG A 172 ASN A 176 -1 O TYR A 173 N PHE A 157 SHEET 1 E 5 VAL A 136 ASP A 140 0 SHEET 2 E 5 LYS A 143 LYS A 148 -1 O LYS A 143 N ASP A 140 SHEET 3 E 5 ILE A 254 TYR A 261 -1 O ALA A 257 N LYS A 148 SHEET 4 E 5 PHE A 129 ILE A 132 1 N VAL A 130 O ILE A 255 SHEET 5 E 5 TRP A 282 VAL A 285 -1 O GLU A 283 N ARG A 131 SHEET 1 F 2 PHE A 192 PHE A 194 0 SHEET 2 F 2 ILE A 216 VAL A 218 1 O VAL A 218 N GLY A 193 LINK NE2 HIS A 79 ZN ZN A 401 1555 1555 2.11 LINK NE2 HIS A 238 ZN ZN A 401 1555 1555 2.11 LINK OD1 ASP A 242 ZN ZN A 401 1555 1555 2.14 LINK OD2 ASP A 242 ZN ZN A 401 1555 1555 2.64 LINK ZN ZN A 401 O28 GVR A 402 1555 1555 2.18 LINK ZN ZN A 401 O30 GVR A 402 1555 1555 2.22 CISPEP 1 ASN A 45 PRO A 46 0 -0.86 SITE 1 AC1 4 HIS A 79 HIS A 238 ASP A 242 GVR A 402 SITE 1 AC2 17 LEU A 18 LEU A 62 CYS A 63 THR A 76 SITE 2 AC2 17 GLU A 78 HIS A 79 ILE A 103 THR A 191 SITE 3 AC2 17 PHE A 192 GLY A 193 ILE A 198 CYS A 214 SITE 4 AC2 17 ALA A 215 HIS A 238 ASP A 242 HIS A 265 SITE 5 AC2 17 ZN A 401 SITE 1 AC3 12 MET A 61 LEU A 116 ASP A 180 MET A 183 SITE 2 AC3 12 ARG A 184 ASP A 197 TYR A 200 LEU A 201 SITE 3 AC3 12 PRO A 300 FMT A 404 FMT A 412 D1D A 421 SITE 1 AC4 3 GVR A 403 HOH A1229 HOH A1277 SITE 1 AC5 5 MET A 195 ILE A 198 HOH A1230 HOH A1260 SITE 2 AC5 5 HOH A1262 SITE 1 AC6 4 LYS A 143 ALA A 181 ARG A 184 GLN A 185 SITE 1 AC7 5 TYR A 221 ARG A 222 ASP A 227 HOH A1094 SITE 2 AC7 5 HOH A1280 SITE 1 AC8 5 ASP A 160 PHE A 161 ASN A 162 ARG A 184 SITE 2 AC8 5 GLN A 185 SITE 1 AC9 4 THR A 60 LEU A 62 CYS A 63 HOH A1256 SITE 1 BC1 5 MET A 104 ASP A 105 PRO A 110 HOH A1119 SITE 2 BC1 5 HOH A1148 SITE 1 BC2 4 PHE A 161 ARG A 184 PHE A 192 GVR A 403 SITE 1 BC3 2 LYS A 55 HOH A1307 SITE 1 BC4 2 ARG A 196 HOH A1296 SITE 1 BC5 3 TRP A 144 TYR A 261 HOH A1159 SITE 1 BC6 2 GLU A 134 THR A 135 SITE 1 BC7 4 SER A 154 LEU A 155 MET A 175 ASN A 176 SITE 1 BC8 1 ARG A 29 SITE 1 BC9 2 ASP A 71 TYR A 284 SITE 1 CC1 6 PHE A 153 ASN A 253 ILE A 254 PHE A 297 SITE 2 CC1 6 HOH A1002 HOH A1050 SITE 1 CC2 7 TYR A 113 MET A 183 SER A 187 ARG A 188 SITE 2 CC2 7 ASP A 197 GVR A 403 HOH A1043 CRYST1 106.788 106.788 52.474 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009364 0.005407 0.000000 0.00000 SCALE2 0.000000 0.010813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019057 0.00000