HEADER OXIDOREDUCTASE 18-JAN-13 4IT9 TITLE STRUCTURE OF BACTERIAL ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE-SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 32049; SOURCE 4 STRAIN: ATCC 27264 / PCC 7002 / PR-6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RHEE,J.PARK REVDAT 3 28-FEB-24 4IT9 1 REMARK SEQADV REVDAT 2 26-JUN-13 4IT9 1 JRNL SOURCE REVDAT 1 24-APR-13 4IT9 0 JRNL AUTH J.PARK,S.RHEE JRNL TITL STRUCTURAL BASIS FOR A COFACTOR-DEPENDENT OXIDATION JRNL TITL 2 PROTECTION AND CATALYSIS OF CYANOBACTERIAL SUCCINIC JRNL TITL 3 SEMIALDEHYDE DEHYDROGENASE. JRNL REF J.BIOL.CHEM. V. 288 15760 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23589281 JRNL DOI 10.1074/JBC.M113.460428 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 98292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1517 - 4.0941 0.97 7127 149 0.2014 0.1865 REMARK 3 2 4.0941 - 3.2501 0.99 6964 143 0.1818 0.1974 REMARK 3 3 3.2501 - 2.8394 1.00 6952 144 0.1853 0.1834 REMARK 3 4 2.8394 - 2.5799 1.00 6951 145 0.1823 0.2126 REMARK 3 5 2.5799 - 2.3950 1.00 6874 142 0.1762 0.2178 REMARK 3 6 2.3950 - 2.2538 1.00 6884 143 0.1691 0.2167 REMARK 3 7 2.2538 - 2.1409 1.00 6870 143 0.1663 0.2105 REMARK 3 8 2.1409 - 2.0477 1.00 6857 142 0.1679 0.1948 REMARK 3 9 2.0477 - 1.9689 1.00 6857 143 0.1661 0.2100 REMARK 3 10 1.9689 - 1.9010 1.00 6841 141 0.1709 0.2071 REMARK 3 11 1.9010 - 1.8415 1.00 6779 141 0.1798 0.2044 REMARK 3 12 1.8415 - 1.7889 0.99 6782 141 0.1990 0.2687 REMARK 3 13 1.7889 - 1.7418 1.00 6840 141 0.2098 0.2479 REMARK 3 14 1.7418 - 1.6993 0.99 6717 139 0.2251 0.2818 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.71200 REMARK 3 B22 (A**2) : -4.00320 REMARK 3 B33 (A**2) : -0.70880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7129 REMARK 3 ANGLE : 1.100 9626 REMARK 3 CHIRALITY : 0.073 1086 REMARK 3 PLANARITY : 0.005 1254 REMARK 3 DIHEDRAL : 13.899 2589 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.17400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 14.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.38950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.63350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.63350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.38950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 806 O HOH B 810 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 229 -156.25 -112.09 REMARK 500 TYR A 339 58.05 -91.63 REMARK 500 LEU A 387 -78.21 -88.37 REMARK 500 THR A 393 148.58 -170.64 REMARK 500 LYS A 429 -136.97 54.52 REMARK 500 LEU A 437 173.84 66.47 REMARK 500 PHE A 445 51.73 -109.73 REMARK 500 LEU B 229 -156.76 -111.55 REMARK 500 LEU B 387 -77.13 -89.97 REMARK 500 THR B 393 149.04 -170.25 REMARK 500 LYS B 429 -137.08 54.04 REMARK 500 LEU B 437 170.94 68.28 REMARK 500 PHE B 445 51.82 -110.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 515 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ITA RELATED DB: PDB REMARK 900 RELATED ID: 4ITB RELATED DB: PDB DBREF 4IT9 A 1 454 UNP B1XMM6 B1XMM6_SYNP2 1 454 DBREF 4IT9 B 1 454 UNP B1XMM6 B1XMM6_SYNP2 1 454 SEQADV 4IT9 GLY A -1 UNP B1XMM6 EXPRESSION TAG SEQADV 4IT9 HIS A 0 UNP B1XMM6 EXPRESSION TAG SEQADV 4IT9 GLY B -1 UNP B1XMM6 EXPRESSION TAG SEQADV 4IT9 HIS B 0 UNP B1XMM6 EXPRESSION TAG SEQRES 1 A 456 GLY HIS MET ALA ILE ALA THR ILE ASN PRO THR THR GLY SEQRES 2 A 456 GLU ILE CYS GLN ARG PHE LYS ALA LEU THR PRO ALA GLU SEQRES 3 A 456 ILE ASP ALA LYS LEU ALA LYS ALA GLN GLU ALA PHE GLN SEQRES 4 A 456 ALA TYR ARG ARG THR SER PHE SER GLN ARG ARG GLN TRP SEQRES 5 A 456 LEU GLU ASN ALA ALA ALA ILE LEU GLU ARG ASP THR SER SEQRES 6 A 456 LYS PHE ALA GLU ILE MET THR THR GLU MET GLY LYS THR SEQRES 7 A 456 HIS GLN SER ALA ILE ALA GLU ALA GLU LYS SER ALA LEU SEQRES 8 A 456 VAL CYS ARG TYR TYR ALA GLU HIS GLY GLU GLN PHE LEU SEQRES 9 A 456 ALA ASN GLU TYR THR GLU THR GLN ALA THR GLU SER TYR SEQRES 10 A 456 VAL CYS TYR GLN PRO LEU GLY ILE LEU LEU ALA VAL MET SEQRES 11 A 456 PRO TRP ASN PHE PRO PHE TRP GLN VAL PHE ARG PHE ALA SEQRES 12 A 456 ALA PRO ALA LEU MET ALA GLY ASN VAL ALA VAL LEU LYS SEQRES 13 A 456 HIS ALA SER ASN VAL PRO GLN CYS ALA LEU ALA VAL GLU SEQRES 14 A 456 ALA ILE LEU GLU ALA ALA GLY PHE PRO GLU GLY VAL PHE SEQRES 15 A 456 GLN THR LEU LEU ILE GLY ALA SER GLN VAL GLU GLN VAL SEQRES 16 A 456 ILE LYS ASP PRO ARG VAL LYS ALA ALA THR LEU THR GLY SEQRES 17 A 456 SER GLU PRO ALA GLY ALA SER LEU ALA SER LEU ALA GLY SEQRES 18 A 456 GLN GLU ILE LYS PRO THR LEU LEU GLU LEU GLY GLY SER SEQRES 19 A 456 ASP PRO PHE VAL VAL PHE PRO SER ALA ASP LEU ASP GLU SEQRES 20 A 456 ALA VAL GLU VAL GLY THR VAL ALA ARG THR MET ASN ASN SEQRES 21 A 456 GLY GLN SER CYS ILE ALA ALA LYS ARG PHE ILE LEU HIS SEQRES 22 A 456 GLU ALA ILE ALA ALA GLU PHE LEU GLU LYS LEU HIS LEU SEQRES 23 A 456 LYS PHE ALA SER LEU LYS ILE GLY ASP PRO MET ALA PRO SEQRES 24 A 456 GLU THR ASP ILE GLY PRO LEU ALA THR GLU GLY ILE LEU SEQRES 25 A 456 GLN ASP ILE SER ARG GLN VAL ASP GLN ALA VAL ALA ALA SEQRES 26 A 456 GLY ALA LYS ILE LEU LEU GLY GLY ARG PRO LEU ASP ARG SEQRES 27 A 456 ALA GLY TYR PHE TYR PRO PRO THR ILE LEU THR GLU ILE SEQRES 28 A 456 PRO PRO GLY ALA LYS ILE LEU GLN GLU GLU LEU PHE ALA SEQRES 29 A 456 PRO VAL ALA MET VAL PHE THR VAL LYS ASP LEU ASP GLN SEQRES 30 A 456 ALA ILE ALA LEU ALA ASN ASP ILE PRO PHE GLY LEU GLY SEQRES 31 A 456 ALA SER ALA TRP THR ASN ASP PRO ALA GLU GLN GLN ARG SEQRES 32 A 456 PHE ILE GLN GLU LEU ASP ALA GLY ALA VAL PHE ILE ASN SEQRES 33 A 456 GLY MET VAL LYS SER ASP PRO ARG LEU PRO PHE GLY GLY SEQRES 34 A 456 THR LYS ARG SER GLY TYR GLY ARG GLU LEU GLY LEU ALA SEQRES 35 A 456 GLY ILE ARG THR PHE VAL ASN ALA LYS THR VAL TRP LEU SEQRES 36 A 456 LYS SEQRES 1 B 456 GLY HIS MET ALA ILE ALA THR ILE ASN PRO THR THR GLY SEQRES 2 B 456 GLU ILE CYS GLN ARG PHE LYS ALA LEU THR PRO ALA GLU SEQRES 3 B 456 ILE ASP ALA LYS LEU ALA LYS ALA GLN GLU ALA PHE GLN SEQRES 4 B 456 ALA TYR ARG ARG THR SER PHE SER GLN ARG ARG GLN TRP SEQRES 5 B 456 LEU GLU ASN ALA ALA ALA ILE LEU GLU ARG ASP THR SER SEQRES 6 B 456 LYS PHE ALA GLU ILE MET THR THR GLU MET GLY LYS THR SEQRES 7 B 456 HIS GLN SER ALA ILE ALA GLU ALA GLU LYS SER ALA LEU SEQRES 8 B 456 VAL CYS ARG TYR TYR ALA GLU HIS GLY GLU GLN PHE LEU SEQRES 9 B 456 ALA ASN GLU TYR THR GLU THR GLN ALA THR GLU SER TYR SEQRES 10 B 456 VAL CYS TYR GLN PRO LEU GLY ILE LEU LEU ALA VAL MET SEQRES 11 B 456 PRO TRP ASN PHE PRO PHE TRP GLN VAL PHE ARG PHE ALA SEQRES 12 B 456 ALA PRO ALA LEU MET ALA GLY ASN VAL ALA VAL LEU LYS SEQRES 13 B 456 HIS ALA SER ASN VAL PRO GLN CYS ALA LEU ALA VAL GLU SEQRES 14 B 456 ALA ILE LEU GLU ALA ALA GLY PHE PRO GLU GLY VAL PHE SEQRES 15 B 456 GLN THR LEU LEU ILE GLY ALA SER GLN VAL GLU GLN VAL SEQRES 16 B 456 ILE LYS ASP PRO ARG VAL LYS ALA ALA THR LEU THR GLY SEQRES 17 B 456 SER GLU PRO ALA GLY ALA SER LEU ALA SER LEU ALA GLY SEQRES 18 B 456 GLN GLU ILE LYS PRO THR LEU LEU GLU LEU GLY GLY SER SEQRES 19 B 456 ASP PRO PHE VAL VAL PHE PRO SER ALA ASP LEU ASP GLU SEQRES 20 B 456 ALA VAL GLU VAL GLY THR VAL ALA ARG THR MET ASN ASN SEQRES 21 B 456 GLY GLN SER CYS ILE ALA ALA LYS ARG PHE ILE LEU HIS SEQRES 22 B 456 GLU ALA ILE ALA ALA GLU PHE LEU GLU LYS LEU HIS LEU SEQRES 23 B 456 LYS PHE ALA SER LEU LYS ILE GLY ASP PRO MET ALA PRO SEQRES 24 B 456 GLU THR ASP ILE GLY PRO LEU ALA THR GLU GLY ILE LEU SEQRES 25 B 456 GLN ASP ILE SER ARG GLN VAL ASP GLN ALA VAL ALA ALA SEQRES 26 B 456 GLY ALA LYS ILE LEU LEU GLY GLY ARG PRO LEU ASP ARG SEQRES 27 B 456 ALA GLY TYR PHE TYR PRO PRO THR ILE LEU THR GLU ILE SEQRES 28 B 456 PRO PRO GLY ALA LYS ILE LEU GLN GLU GLU LEU PHE ALA SEQRES 29 B 456 PRO VAL ALA MET VAL PHE THR VAL LYS ASP LEU ASP GLN SEQRES 30 B 456 ALA ILE ALA LEU ALA ASN ASP ILE PRO PHE GLY LEU GLY SEQRES 31 B 456 ALA SER ALA TRP THR ASN ASP PRO ALA GLU GLN GLN ARG SEQRES 32 B 456 PHE ILE GLN GLU LEU ASP ALA GLY ALA VAL PHE ILE ASN SEQRES 33 B 456 GLY MET VAL LYS SER ASP PRO ARG LEU PRO PHE GLY GLY SEQRES 34 B 456 THR LYS ARG SER GLY TYR GLY ARG GLU LEU GLY LEU ALA SEQRES 35 B 456 GLY ILE ARG THR PHE VAL ASN ALA LYS THR VAL TRP LEU SEQRES 36 B 456 LYS HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET EDO A 515 4 HET EDO A 516 4 HET EDO A 517 4 HET PO4 A 518 5 HET EDO B 501 4 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET EDO B 505 4 HET EDO B 506 4 HET EDO B 507 4 HET EDO B 508 4 HET EDO B 509 4 HET EDO B 510 4 HET EDO B 511 4 HET EDO B 512 4 HET EDO B 513 4 HET EDO B 514 4 HET PO4 B 515 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 31(C2 H6 O2) FORMUL 20 PO4 2(O4 P 3-) FORMUL 36 HOH *610(H2 O) HELIX 1 1 THR A 21 ARG A 40 1 20 HELIX 2 2 SER A 43 ASP A 61 1 19 HELIX 3 3 ASP A 61 GLY A 74 1 14 HELIX 4 4 THR A 76 LEU A 102 1 27 HELIX 5 5 PHE A 134 ALA A 147 1 14 HELIX 6 6 VAL A 159 GLY A 174 1 16 HELIX 7 7 GLY A 186 SER A 188 5 3 HELIX 8 8 GLN A 189 ASP A 196 1 8 HELIX 9 9 SER A 207 GLU A 221 1 15 HELIX 10 10 ASP A 242 MET A 256 1 15 HELIX 11 11 ASN A 257 GLN A 260 5 4 HELIX 12 12 GLU A 272 SER A 288 1 17 HELIX 13 13 THR A 306 GLY A 324 1 19 HELIX 14 14 ALA A 353 GLU A 358 5 6 HELIX 15 15 ASP A 372 ASP A 382 1 11 HELIX 16 16 ASP A 395 LEU A 406 1 12 HELIX 17 17 THR A 428 ARG A 430 5 3 HELIX 18 18 LEU A 437 THR A 444 1 8 HELIX 19 19 THR B 21 ARG B 40 1 20 HELIX 20 20 SER B 43 ASP B 61 1 19 HELIX 21 21 ASP B 61 GLY B 74 1 14 HELIX 22 22 THR B 76 LEU B 102 1 27 HELIX 23 23 PHE B 134 ALA B 147 1 14 HELIX 24 24 VAL B 159 GLY B 174 1 16 HELIX 25 25 GLY B 186 SER B 188 5 3 HELIX 26 26 GLN B 189 ASP B 196 1 8 HELIX 27 27 SER B 207 GLU B 221 1 15 HELIX 28 28 ASP B 242 MET B 256 1 15 HELIX 29 29 ASN B 257 GLN B 260 5 4 HELIX 30 30 GLU B 272 SER B 288 1 17 HELIX 31 31 THR B 306 GLY B 324 1 19 HELIX 32 32 ALA B 353 GLU B 358 5 6 HELIX 33 33 ASP B 372 ASP B 382 1 11 HELIX 34 34 ASP B 395 LEU B 406 1 12 HELIX 35 35 THR B 428 ARG B 430 5 3 HELIX 36 36 LEU B 437 THR B 444 1 8 SHEET 1 A 2 ALA A 4 ILE A 6 0 SHEET 2 A 2 ILE A 13 ARG A 16 -1 O CYS A 14 N THR A 5 SHEET 1 B10 GLU A 105 TYR A 106 0 SHEET 2 B10 GLU A 113 PRO A 120 -1 O VAL A 116 N GLU A 105 SHEET 3 B10 VAL A 446 LEU A 453 -1 O ASN A 447 N GLN A 119 SHEET 4 B10 ALA B 410 ILE B 413 1 O ILE B 413 N TRP A 452 SHEET 5 B10 GLY B 388 TRP B 392 1 N ALA B 389 O PHE B 412 SHEET 6 B10 ASP B 233 VAL B 237 1 N VAL B 236 O SER B 390 SHEET 7 B10 ALA B 265 HIS B 271 1 O HIS B 271 N VAL B 237 SHEET 8 B10 VAL B 364 VAL B 370 1 O MET B 366 N PHE B 268 SHEET 9 B10 THR B 344 THR B 347 1 N LEU B 346 O ALA B 365 SHEET 10 B10 LYS B 326 LEU B 329 -1 N LYS B 326 O THR B 347 SHEET 1 C 6 PHE A 180 LEU A 183 0 SHEET 2 C 6 VAL A 150 LYS A 154 1 N LEU A 153 O LEU A 183 SHEET 3 C 6 ILE A 123 VAL A 127 1 N ALA A 126 O LYS A 154 SHEET 4 C 6 VAL A 199 THR A 205 1 O THR A 203 N VAL A 127 SHEET 5 C 6 THR A 225 GLU A 228 1 O LEU A 226 N LEU A 204 SHEET 6 C 6 GLY A 432 TYR A 433 -1 O TYR A 433 N LEU A 227 SHEET 1 D10 LYS A 326 LEU A 329 0 SHEET 2 D10 THR A 344 THR A 347 -1 O THR A 347 N LYS A 326 SHEET 3 D10 VAL A 364 VAL A 370 1 O ALA A 365 N LEU A 346 SHEET 4 D10 ALA A 265 HIS A 271 1 N PHE A 268 O MET A 366 SHEET 5 D10 ASP A 233 VAL A 237 1 N VAL A 237 O HIS A 271 SHEET 6 D10 GLY A 388 TRP A 392 1 O SER A 390 N VAL A 236 SHEET 7 D10 ALA A 410 ILE A 413 1 O PHE A 412 N ALA A 389 SHEET 8 D10 VAL B 446 LEU B 453 1 O TRP B 452 N ILE A 413 SHEET 9 D10 GLU B 113 PRO B 120 -1 N GLN B 119 O ASN B 447 SHEET 10 D10 GLU B 105 TYR B 106 -1 N GLU B 105 O VAL B 116 SHEET 1 E 2 ALA B 4 ILE B 6 0 SHEET 2 E 2 ILE B 13 ARG B 16 -1 O CYS B 14 N THR B 5 SHEET 1 F 6 PHE B 180 THR B 182 0 SHEET 2 F 6 VAL B 150 LYS B 154 1 N LEU B 153 O GLN B 181 SHEET 3 F 6 ILE B 123 VAL B 127 1 N ALA B 126 O LYS B 154 SHEET 4 F 6 VAL B 199 THR B 205 1 O THR B 203 N VAL B 127 SHEET 5 F 6 THR B 225 GLU B 228 1 O LEU B 226 N LEU B 204 SHEET 6 F 6 GLY B 432 TYR B 433 -1 O TYR B 433 N LEU B 227 SITE 1 AC1 7 PRO A 224 THR A 225 TYR A 433 HOH A 835 SITE 2 AC1 7 PRO B 224 THR B 225 TYR B 433 SITE 1 AC2 8 GLY A 409 ALA A 410 PRO A 424 PHE A 425 SITE 2 AC2 8 GLY A 426 ARG A 435 ALA B 448 THR B 450 SITE 1 AC3 9 GLU A 167 GLU A 171 PHE A 175 PRO A 176 SITE 2 AC3 9 VAL A 179 PHE A 180 HOH A 616 HOH A 622 SITE 3 AC3 9 HOH A 706 SITE 1 AC4 7 ASP A 312 GLN A 316 GLU A 359 LEU A 360 SITE 2 AC4 7 PHE A 361 EDO A 509 HOH A 866 SITE 1 AC5 5 GLU A 99 GLN A 100 GLN A 192 HOH A 623 SITE 2 AC5 5 HOH A 885 SITE 1 AC6 6 PRO A 22 ARG A 48 GLU A 96 SER A 188 SITE 2 AC6 6 GLN A 189 HOH A 757 SITE 1 AC7 5 GLU A 208 LEU A 229 GLY A 230 GLU A 359 SITE 2 AC7 5 HOH A 653 SITE 1 AC8 9 LEU A 124 PRO A 143 ALA A 144 ASN A 149 SITE 2 AC8 9 GLY A 441 ILE A 442 THR A 444 PHE A 445 SITE 3 AC8 9 HOH A 671 SITE 1 AC9 4 GLU A 359 PHE A 361 EDO A 504 HOH A 866 SITE 1 BC1 4 MET A 256 SER A 261 ILE A 263 MET A 416 SITE 1 BC2 6 HIS A 155 ALA A 156 ALA A 163 LEU A 183 SITE 2 BC2 6 LEU A 184 ILE A 185 SITE 1 BC3 5 GLN A 319 ALA A 320 LYS A 354 ILE A 355 SITE 2 BC3 5 HOH A 677 SITE 1 BC4 5 ARG A 267 LEU A 356 GLN A 357 LEU A 379 SITE 2 BC4 5 ASP A 382 SITE 1 BC5 8 PHE A 44 ARG A 47 LEU A 102 TYR A 118 SITE 2 BC5 8 PRO A 120 ALA A 147 EDO A 515 EDO A 516 SITE 1 BC6 3 ARG A 40 PRO A 120 EDO A 514 SITE 1 BC7 5 THR A 42 PHE A 44 ARG A 47 EDO A 514 SITE 2 BC7 5 HOH A 678 SITE 1 BC8 5 ALA A 187 VAL A 190 ALA A 210 SER A 213 SITE 2 BC8 5 LEU A 214 SITE 1 BC9 5 LYS A 154 ALA A 156 SER A 157 ALA A 187 SITE 2 BC9 5 HOH A 693 SITE 1 CC1 4 SER A 45 GLU B 34 ALA B 35 HOH B 680 SITE 1 CC2 9 GLU B 167 GLU B 171 PHE B 175 PRO B 176 SITE 2 CC2 9 VAL B 179 PHE B 180 HOH B 626 HOH B 632 SITE 3 CC2 9 HOH B 746 SITE 1 CC3 5 GLU B 99 GLN B 100 GLN B 192 HOH B 614 SITE 2 CC3 5 HOH B 888 SITE 1 CC4 6 GLN B 316 GLU B 359 LEU B 360 PHE B 361 SITE 2 CC4 6 EDO B 510 HOH B 851 SITE 1 CC5 6 ILE A 57 ALA A 172 HOH A 759 ILE B 57 SITE 2 CC5 6 ALA B 172 HOH B 712 SITE 1 CC6 6 PHE B 132 MET B 256 SER B 261 ILE B 263 SITE 2 CC6 6 MET B 416 EDO B 511 SITE 1 CC7 6 PRO B 22 ARG B 48 GLU B 96 SER B 188 SITE 2 CC7 6 GLN B 189 HOH B 803 SITE 1 CC8 5 GLU B 208 LEU B 229 GLY B 230 GLU B 359 SITE 2 CC8 5 HOH B 640 SITE 1 CC9 9 LEU B 124 PRO B 143 ALA B 144 ASN B 149 SITE 2 CC9 9 GLY B 441 ILE B 442 THR B 444 PHE B 445 SITE 3 CC9 9 HOH B 701 SITE 1 DC1 5 ILE B 309 GLU B 359 PHE B 361 EDO B 504 SITE 2 DC1 5 HOH B 851 SITE 1 DC2 6 TRP B 135 GLN B 136 CYS B 262 SER B 419 SITE 2 DC2 6 EDO B 506 HOH B 644 SITE 1 DC3 6 SER B 288 LEU B 289 ASP B 300 HOH B 707 SITE 2 DC3 6 HOH B 742 HOH B 880 SITE 1 DC4 6 GLN B 319 ALA B 320 ALA B 353 LYS B 354 SITE 2 DC4 6 ILE B 355 HOH B 714 SITE 1 DC5 5 ALA B 187 ALA B 210 SER B 213 LEU B 214 SITE 2 DC5 5 HOH B 885 SITE 1 DC6 6 LYS B 154 ALA B 156 SER B 157 ALA B 187 SITE 2 DC6 6 HOH B 730 HOH B 885 CRYST1 42.779 115.340 179.267 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005578 0.00000