HEADER LYASE 18-JAN-13 4ITG TITLE P113S MUTANT OF E. COLI CYSTATHIONINE BETA-LYASE METC COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATHIONINE BETA-LYASE METC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CBL, BETA-CYSTATHIONASE, CYSTEINE LYASE; COMPND 5 EC: 4.4.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B3008, JW2975, METC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTATHIONINE BETA-LYASE, PLP ADDUCT (LLP RESIDUE AT AMINO ACID 210), KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.SQUIRE,Y.YOSAATMADJA,V.W.C.SOO,W.M.PATRICK REVDAT 4 06-DEC-23 4ITG 1 REMARK REVDAT 3 20-SEP-23 4ITG 1 REMARK REVDAT 2 22-SEP-21 4ITG 1 JRNL REMARK SEQADV LINK REVDAT 1 24-DEC-14 4ITG 0 JRNL AUTH V.W.SOO,Y.YOSAATMADJA,C.J.SQUIRE,W.M.PATRICK JRNL TITL MECHANISTIC AND EVOLUTIONARY INSIGHTS FROM THE RECIPROCAL JRNL TITL 2 PROMISCUITY OF TWO PYRIDOXAL PHOSPHATE-DEPENDENT ENZYMES. JRNL REF J.BIOL.CHEM. V. 291 19873 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27474741 JRNL DOI 10.1074/JBC.M116.739557 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 67346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4647 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 255 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6034 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6249 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4131 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8493 ; 1.902 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10064 ; 1.188 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 793 ; 6.498 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;36.552 ;23.804 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1003 ;13.259 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;24.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 955 ; 0.241 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7020 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1292 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3901 ; 1.089 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1608 ; 0.380 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6248 ; 1.745 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2348 ; 2.825 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2241 ; 4.274 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ITG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71753 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 19.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 15.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1CL1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG400, 0.15M CACL2, 0.1 M REMARK 280 HEPES/NAOH (PH 8.2), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.42400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.42400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.96300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.38450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.96300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.38450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.42400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.96300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.38450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.42400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.96300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.38450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.42400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 551 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 527 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 GLU B 40 CD OE1 OE2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 LYS B 317 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 73 CG GLU A 73 CD 0.101 REMARK 500 GLU A 73 CD GLU A 73 OE2 0.066 REMARK 500 HIS A 164 NE2 HIS A 164 CD2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 393 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 15 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 49 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 254 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 285 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 285 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 55.57 -96.59 REMARK 500 SER A 32 -73.79 -99.80 REMARK 500 PHE A 55 -55.52 -133.40 REMARK 500 ILE A 159 -58.00 73.58 REMARK 500 THR A 209 -35.49 -38.61 REMARK 500 LLP A 210 -114.91 -87.72 REMARK 500 ILE A 220 133.99 -173.19 REMARK 500 SER A 308 -159.08 -99.85 REMARK 500 SER A 339 -171.20 70.80 REMARK 500 TRP A 340 -179.79 175.58 REMARK 500 ALA B 31 142.13 -170.39 REMARK 500 SER B 32 -78.95 -95.66 REMARK 500 PHE B 55 -55.84 -135.18 REMARK 500 ILE B 121 -61.70 -97.60 REMARK 500 ILE B 159 -57.78 68.10 REMARK 500 THR B 209 -38.28 -34.65 REMARK 500 LLP B 210 -109.11 -87.93 REMARK 500 ILE B 220 140.76 -174.16 REMARK 500 SER B 308 -154.81 -89.89 REMARK 500 SER B 339 -178.61 66.13 REMARK 500 TRP B 340 -178.40 -179.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ITX RELATED DB: PDB DBREF 4ITG A 1 395 UNP P06721 METC_ECOLI 1 395 DBREF 4ITG B 1 395 UNP P06721 METC_ECOLI 1 395 SEQADV 4ITG SER A 113 UNP P06721 PRO 113 ENGINEERED MUTATION SEQADV 4ITG SER B 113 UNP P06721 PRO 113 ENGINEERED MUTATION SEQRES 1 A 395 MET ALA ASP LYS LYS LEU ASP THR GLN LEU VAL ASN ALA SEQRES 2 A 395 GLY ARG SER LYS LYS TYR THR LEU GLY ALA VAL ASN SER SEQRES 3 A 395 VAL ILE GLN ARG ALA SER SER LEU VAL PHE ASP SER VAL SEQRES 4 A 395 GLU ALA LYS LYS HIS ALA THR ARG ASN ARG ALA ASN GLY SEQRES 5 A 395 GLU LEU PHE TYR GLY ARG ARG GLY THR LEU THR HIS PHE SEQRES 6 A 395 SER LEU GLN GLN ALA MET CYS GLU LEU GLU GLY GLY ALA SEQRES 7 A 395 GLY CYS VAL LEU PHE PRO CYS GLY ALA ALA ALA VAL ALA SEQRES 8 A 395 ASN SER ILE LEU ALA PHE ILE GLU GLN GLY ASP HIS VAL SEQRES 9 A 395 LEU MET THR ASN THR ALA TYR GLU SER SER GLN ASP PHE SEQRES 10 A 395 CYS SER LYS ILE LEU SER LYS LEU GLY VAL THR THR SER SEQRES 11 A 395 TRP PHE ASP PRO LEU ILE GLY ALA ASP ILE VAL LYS HIS SEQRES 12 A 395 LEU GLN PRO ASN THR LYS ILE VAL PHE LEU GLU SER PRO SEQRES 13 A 395 GLY SER ILE THR MET GLU VAL HIS ASP VAL PRO ALA ILE SEQRES 14 A 395 VAL ALA ALA VAL ARG SER VAL VAL PRO ASP ALA ILE ILE SEQRES 15 A 395 MET ILE ASP ASN THR TRP ALA ALA GLY VAL LEU PHE LYS SEQRES 16 A 395 ALA LEU ASP PHE GLY ILE ASP VAL SER ILE GLN ALA ALA SEQRES 17 A 395 THR LLP TYR LEU VAL GLY HIS SER ASP ALA MET ILE GLY SEQRES 18 A 395 THR ALA VAL CYS ASN ALA ARG CYS TRP GLU GLN LEU ARG SEQRES 19 A 395 GLU ASN ALA TYR LEU MET GLY GLN MET VAL ASP ALA ASP SEQRES 20 A 395 THR ALA TYR ILE THR SER ARG GLY LEU ARG THR LEU GLY SEQRES 21 A 395 VAL ARG LEU ARG GLN HIS HIS GLU SER SER LEU LYS VAL SEQRES 22 A 395 ALA GLU TRP LEU ALA GLU HIS PRO GLN VAL ALA ARG VAL SEQRES 23 A 395 ASN HIS PRO ALA LEU PRO GLY SER LYS GLY HIS GLU PHE SEQRES 24 A 395 TRP LYS ARG ASP PHE THR GLY SER SER GLY LEU PHE SER SEQRES 25 A 395 PHE VAL LEU LYS LYS LYS LEU ASN ASN GLU GLU LEU ALA SEQRES 26 A 395 ASN TYR LEU ASP ASN PHE SER LEU PHE SER MET ALA TYR SEQRES 27 A 395 SER TRP GLY GLY TYR GLU SER LEU ILE LEU ALA ASN GLN SEQRES 28 A 395 PRO GLU HIS ILE ALA ALA ILE ARG PRO GLN GLY GLU ILE SEQRES 29 A 395 ASP PHE SER GLY THR LEU ILE ARG LEU HIS ILE GLY LEU SEQRES 30 A 395 GLU ASP VAL ASP ASP LEU ILE ALA ASP LEU ASP ALA GLY SEQRES 31 A 395 PHE ALA ARG ILE VAL SEQRES 1 B 395 MET ALA ASP LYS LYS LEU ASP THR GLN LEU VAL ASN ALA SEQRES 2 B 395 GLY ARG SER LYS LYS TYR THR LEU GLY ALA VAL ASN SER SEQRES 3 B 395 VAL ILE GLN ARG ALA SER SER LEU VAL PHE ASP SER VAL SEQRES 4 B 395 GLU ALA LYS LYS HIS ALA THR ARG ASN ARG ALA ASN GLY SEQRES 5 B 395 GLU LEU PHE TYR GLY ARG ARG GLY THR LEU THR HIS PHE SEQRES 6 B 395 SER LEU GLN GLN ALA MET CYS GLU LEU GLU GLY GLY ALA SEQRES 7 B 395 GLY CYS VAL LEU PHE PRO CYS GLY ALA ALA ALA VAL ALA SEQRES 8 B 395 ASN SER ILE LEU ALA PHE ILE GLU GLN GLY ASP HIS VAL SEQRES 9 B 395 LEU MET THR ASN THR ALA TYR GLU SER SER GLN ASP PHE SEQRES 10 B 395 CYS SER LYS ILE LEU SER LYS LEU GLY VAL THR THR SER SEQRES 11 B 395 TRP PHE ASP PRO LEU ILE GLY ALA ASP ILE VAL LYS HIS SEQRES 12 B 395 LEU GLN PRO ASN THR LYS ILE VAL PHE LEU GLU SER PRO SEQRES 13 B 395 GLY SER ILE THR MET GLU VAL HIS ASP VAL PRO ALA ILE SEQRES 14 B 395 VAL ALA ALA VAL ARG SER VAL VAL PRO ASP ALA ILE ILE SEQRES 15 B 395 MET ILE ASP ASN THR TRP ALA ALA GLY VAL LEU PHE LYS SEQRES 16 B 395 ALA LEU ASP PHE GLY ILE ASP VAL SER ILE GLN ALA ALA SEQRES 17 B 395 THR LLP TYR LEU VAL GLY HIS SER ASP ALA MET ILE GLY SEQRES 18 B 395 THR ALA VAL CYS ASN ALA ARG CYS TRP GLU GLN LEU ARG SEQRES 19 B 395 GLU ASN ALA TYR LEU MET GLY GLN MET VAL ASP ALA ASP SEQRES 20 B 395 THR ALA TYR ILE THR SER ARG GLY LEU ARG THR LEU GLY SEQRES 21 B 395 VAL ARG LEU ARG GLN HIS HIS GLU SER SER LEU LYS VAL SEQRES 22 B 395 ALA GLU TRP LEU ALA GLU HIS PRO GLN VAL ALA ARG VAL SEQRES 23 B 395 ASN HIS PRO ALA LEU PRO GLY SER LYS GLY HIS GLU PHE SEQRES 24 B 395 TRP LYS ARG ASP PHE THR GLY SER SER GLY LEU PHE SER SEQRES 25 B 395 PHE VAL LEU LYS LYS LYS LEU ASN ASN GLU GLU LEU ALA SEQRES 26 B 395 ASN TYR LEU ASP ASN PHE SER LEU PHE SER MET ALA TYR SEQRES 27 B 395 SER TRP GLY GLY TYR GLU SER LEU ILE LEU ALA ASN GLN SEQRES 28 B 395 PRO GLU HIS ILE ALA ALA ILE ARG PRO GLN GLY GLU ILE SEQRES 29 B 395 ASP PHE SER GLY THR LEU ILE ARG LEU HIS ILE GLY LEU SEQRES 30 B 395 GLU ASP VAL ASP ASP LEU ILE ALA ASP LEU ASP ALA GLY SEQRES 31 B 395 PHE ALA ARG ILE VAL MODRES 4ITG LLP A 210 LYS MODRES 4ITG LLP B 210 LYS HET LLP A 210 24 HET LLP B 210 24 HET EPE A 401 15 HET EPE B 401 15 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EPE HEPES FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 5 HOH *377(H2 O) HELIX 1 1 LYS A 5 ALA A 13 1 9 HELIX 2 2 SER A 16 LEU A 21 1 6 HELIX 3 3 SER A 38 ASN A 48 1 11 HELIX 4 4 THR A 61 GLY A 76 1 16 HELIX 5 5 CYS A 85 ILE A 98 1 14 HELIX 6 6 TYR A 111 ILE A 121 1 11 HELIX 7 7 LEU A 122 GLY A 126 5 5 HELIX 8 8 ILE A 136 LEU A 144 5 9 HELIX 9 9 ASP A 165 VAL A 177 1 13 HELIX 10 10 LYS A 195 GLY A 200 5 6 HELIX 11 11 CYS A 229 MET A 240 1 12 HELIX 12 12 ASP A 245 ARG A 257 1 13 HELIX 13 13 THR A 258 GLU A 279 1 22 HELIX 14 14 GLY A 296 PHE A 304 1 9 HELIX 15 15 ASN A 320 ASN A 330 1 11 HELIX 16 16 GLN A 351 ALA A 357 1 7 HELIX 17 17 ASP A 379 ILE A 394 1 16 HELIX 18 18 LYS B 5 ALA B 13 1 9 HELIX 19 19 SER B 16 LEU B 21 1 6 HELIX 20 20 SER B 38 ASN B 48 1 11 HELIX 21 21 TYR B 56 GLY B 60 5 5 HELIX 22 22 THR B 61 GLY B 76 1 16 HELIX 23 23 CYS B 85 ILE B 98 1 14 HELIX 24 24 TYR B 111 ILE B 121 1 11 HELIX 25 25 LEU B 122 GLY B 126 5 5 HELIX 26 26 ILE B 136 LEU B 144 5 9 HELIX 27 27 ASP B 165 VAL B 177 1 13 HELIX 28 28 LYS B 195 GLY B 200 5 6 HELIX 29 29 ASN B 226 MET B 240 1 15 HELIX 30 30 ASP B 245 HIS B 280 1 36 HELIX 31 31 GLY B 296 PHE B 304 1 9 HELIX 32 32 ASN B 320 ASP B 329 1 10 HELIX 33 33 GLN B 351 ALA B 357 1 7 HELIX 34 34 ASP B 379 ARG B 393 1 15 SHEET 1 A 7 GLY A 79 PHE A 83 0 SHEET 2 A 7 GLY A 221 CYS A 225 -1 O ALA A 223 N VAL A 81 SHEET 3 A 7 VAL A 203 ALA A 207 -1 N SER A 204 O VAL A 224 SHEET 4 A 7 ILE A 181 ASP A 185 1 N ILE A 184 O ILE A 205 SHEET 5 A 7 THR A 148 GLU A 154 1 N LEU A 153 O MET A 183 SHEET 6 A 7 HIS A 103 THR A 107 1 N HIS A 103 O LYS A 149 SHEET 7 A 7 THR A 128 PHE A 132 1 O SER A 130 N VAL A 104 SHEET 1 B 4 VAL A 283 ASN A 287 0 SHEET 2 B 4 LEU A 310 LEU A 315 -1 O SER A 312 N ASN A 287 SHEET 3 B 4 LEU A 370 HIS A 374 -1 O ILE A 371 N PHE A 313 SHEET 4 B 4 LEU A 346 ASN A 350 -1 N ASN A 350 O LEU A 370 SHEET 1 C 7 GLY B 79 PHE B 83 0 SHEET 2 C 7 GLY B 221 CYS B 225 -1 O ALA B 223 N VAL B 81 SHEET 3 C 7 VAL B 203 ALA B 207 -1 N SER B 204 O VAL B 224 SHEET 4 C 7 ILE B 181 ASP B 185 1 N ILE B 184 O ILE B 205 SHEET 5 C 7 THR B 148 GLU B 154 1 N LYS B 149 O ILE B 181 SHEET 6 C 7 HIS B 103 THR B 107 1 N LEU B 105 O PHE B 152 SHEET 7 C 7 THR B 128 PHE B 132 1 O SER B 130 N VAL B 104 SHEET 1 D 4 VAL B 283 ASN B 287 0 SHEET 2 D 4 LEU B 310 LEU B 315 -1 O VAL B 314 N ARG B 285 SHEET 3 D 4 LEU B 370 HIS B 374 -1 O ILE B 371 N PHE B 313 SHEET 4 D 4 LEU B 346 ASN B 350 -1 N ASN B 350 O LEU B 370 LINK C THR A 209 N LLP A 210 1555 1555 1.34 LINK C LLP A 210 N TYR A 211 1555 1555 1.33 LINK C THR B 209 N LLP B 210 1555 1555 1.33 LINK C LLP B 210 N TYR B 211 1555 1555 1.32 CISPEP 1 SER A 155 PRO A 156 0 -11.43 CISPEP 2 SER B 155 PRO B 156 0 -11.03 SITE 1 AC1 10 TYR A 111 SER A 113 ASP A 116 LLP A 210 SITE 2 AC1 10 TYR A 338 SER A 339 TRP A 340 ARG A 372 SITE 3 AC1 10 HOH A 624 HOH A 634 SITE 1 AC2 8 TYR B 111 SER B 113 ASP B 116 LLP B 210 SITE 2 AC2 8 TYR B 338 SER B 339 TRP B 340 ARG B 372 CRYST1 59.926 152.769 150.848 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006629 0.00000