HEADER RNA BINDING PROTEIN 18-JAN-13 4ITS TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN PUS1 WITH MES IN TITLE 2 THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA PSEUDOURIDINE SYNTHASE A, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 79-408); COMPND 5 SYNONYM: TRNA PSEUDOURIDINE(38-40) SYNTHASE, TRNA PSEUDOURIDYLATE COMPND 6 SYNTHASE I, TRNA-URIDINE ISOMERASE I; COMPND 7 EC: 5.4.99.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PUS1, PP8985; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET47MOD KEYWDS BETA SHEET, ISOMERASE, PSEUDOURIDINE SYNTHASE, RNA BINDING PROTEIN, KEYWDS 2 RNA MODIFICATION, TRNA, PRE-TRNA, STEROID RECEPTOR RNA ACTIVATOR, U2 KEYWDS 3 SNRNA EXPDTA X-RAY DIFFRACTION AUTHOR N.CZUDNOCHOWSKI,J.S.FINER-MOORE,R.M.STROUD REVDAT 2 23-OCT-13 4ITS 1 JRNL REVDAT 1 05-JUN-13 4ITS 0 JRNL AUTH N.CZUDNOCHOWSKI,A.L.WANG,J.FINER-MOORE,R.M.STROUD JRNL TITL IN HUMAN PSEUDOURIDINE SYNTHASE 1 (HPUS1), A C-TERMINAL JRNL TITL 2 HELICAL INSERT BLOCKS TRNA FROM BINDING IN THE SAME JRNL TITL 3 ORIENTATION AS IN THE PUS1 BACTERIAL HOMOLOGUE TRUA, JRNL TITL 4 CONSISTENT WITH THEIR DIFFERENT TARGET SELECTIVITIES. JRNL REF J.MOL.BIOL. V. 425 3875 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23707380 JRNL DOI 10.1016/J.JMB.2013.05.014 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.220 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9253 - 4.4554 0.99 2469 164 0.2016 0.2388 REMARK 3 2 4.4554 - 3.5368 0.99 2256 150 0.1584 0.2036 REMARK 3 3 3.5368 - 3.0899 1.00 2199 145 0.1733 0.2050 REMARK 3 4 3.0899 - 2.8074 1.00 2173 145 0.1924 0.2310 REMARK 3 5 2.8074 - 2.6062 1.00 2153 142 0.1966 0.2576 REMARK 3 6 2.6062 - 2.4526 1.00 2147 143 0.1843 0.2168 REMARK 3 7 2.4526 - 2.3297 1.00 2140 142 0.1723 0.2398 REMARK 3 8 2.3297 - 2.2283 0.99 2116 140 0.1686 0.2251 REMARK 3 9 2.2283 - 2.1425 1.00 2093 139 0.1632 0.2053 REMARK 3 10 2.1425 - 2.0686 1.00 2103 140 0.1755 0.2118 REMARK 3 11 2.0686 - 2.0039 1.00 2089 139 0.1823 0.2414 REMARK 3 12 2.0039 - 1.9466 0.99 2103 138 0.1908 0.2529 REMARK 3 13 1.9466 - 1.8954 1.00 2090 139 0.2033 0.2328 REMARK 3 14 1.8954 - 1.8492 0.98 2014 134 0.2224 0.2716 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2455 REMARK 3 ANGLE : 1.539 3310 REMARK 3 CHIRALITY : 0.113 355 REMARK 3 PLANARITY : 0.007 419 REMARK 3 DIHEDRAL : 14.300 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 82:187) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3318 -7.2490 8.9714 REMARK 3 T TENSOR REMARK 3 T11: 0.4436 T22: 0.1395 REMARK 3 T33: 0.2251 T12: -0.0289 REMARK 3 T13: 0.0330 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.3342 L22: 3.2844 REMARK 3 L33: 2.6254 L12: 0.5725 REMARK 3 L13: -0.9987 L23: -0.2954 REMARK 3 S TENSOR REMARK 3 S11: -0.2590 S12: -0.0090 S13: -0.2886 REMARK 3 S21: -0.1464 S22: 0.0893 S23: 0.0658 REMARK 3 S31: 0.7477 S32: -0.1665 S33: 0.0802 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 188:399) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7808 16.2232 23.3172 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.0995 REMARK 3 T33: 0.1714 T12: -0.0272 REMARK 3 T13: 0.0045 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.9704 L22: 2.3379 REMARK 3 L33: 4.3986 L12: -0.5991 REMARK 3 L13: -1.2938 L23: 0.1024 REMARK 3 S TENSOR REMARK 3 S11: 0.1613 S12: -0.2038 S13: 0.2430 REMARK 3 S21: 0.1033 S22: 0.1102 S23: -0.0284 REMARK 3 S31: -0.5930 S32: -0.0250 S33: -0.1464 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ITS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32146 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 44.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 0.73400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (W/V) PEG8000, 0.1 M MES, 0.2 M REMARK 280 AMSO4 , PH 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 297.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.73333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 223.10000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.36667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 371.83333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 297.46667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 148.73333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.36667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 223.10000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 371.83333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.36667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 73 REMARK 465 PRO A 74 REMARK 465 GLY A 75 REMARK 465 SER A 76 REMARK 465 GLU A 77 REMARK 465 PHE A 78 REMARK 465 GLU A 79 REMARK 465 LYS A 80 REMARK 465 ASN A 103 REMARK 465 VAL A 104 REMARK 465 GLY A 105 REMARK 465 SER A 106 REMARK 465 SER A 107 REMARK 465 SER A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 ARG A 195 REMARK 465 GLU A 341 REMARK 465 LYS A 342 REMARK 465 TYR A 343 REMARK 465 ASN A 344 REMARK 465 GLN A 345 REMARK 465 ARG A 346 REMARK 465 PHE A 347 REMARK 465 GLY A 348 REMARK 465 ASN A 349 REMARK 465 ASP A 350 REMARK 465 GLY A 351 REMARK 465 LEU A 352 REMARK 465 HIS A 353 REMARK 465 GLU A 354 REMARK 465 SER A 400 REMARK 465 ALA A 401 REMARK 465 THR A 402 REMARK 465 ALA A 403 REMARK 465 LEU A 404 REMARK 465 THR A 405 REMARK 465 ALA A 406 REMARK 465 GLY A 407 REMARK 465 GLY A 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 252 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 219 N THR A 221 1.81 REMARK 500 O1 SO4 A 505 O HOH A 744 2.02 REMARK 500 OG SER A 250 O HOH A 729 2.11 REMARK 500 NZ LYS A 85 O PHE A 190 2.17 REMARK 500 O HOH A 632 O HOH A 704 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 98 34.81 -99.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IQM RELATED DB: PDB REMARK 900 HUMAN PUS1 CATALYTIC DOMAIN IN A DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: 4J37 RELATED DB: PDB DBREF 4ITS A 79 408 UNP Q9Y606 TRUA_HUMAN 79 408 SEQADV 4ITS GLY A 73 UNP Q9Y606 EXPRESSION TAG SEQADV 4ITS PRO A 74 UNP Q9Y606 EXPRESSION TAG SEQADV 4ITS GLY A 75 UNP Q9Y606 EXPRESSION TAG SEQADV 4ITS SER A 76 UNP Q9Y606 EXPRESSION TAG SEQADV 4ITS GLU A 77 UNP Q9Y606 EXPRESSION TAG SEQADV 4ITS PHE A 78 UNP Q9Y606 EXPRESSION TAG SEQRES 1 A 336 GLY PRO GLY SER GLU PHE GLU LYS PRO PRO LYS ARG LYS SEQRES 2 A 336 ILE VAL LEU LEU MET ALA TYR SER GLY LYS GLY TYR HIS SEQRES 3 A 336 GLY MET GLN ARG ASN VAL GLY SER SER GLN PHE LYS THR SEQRES 4 A 336 ILE GLU ASP ASP LEU VAL SER ALA LEU VAL ARG SER GLY SEQRES 5 A 336 CYS ILE PRO GLU ASN HIS GLY GLU ASP MET ARG LYS MET SEQRES 6 A 336 SER PHE GLN ARG CYS ALA ARG THR ASP LYS GLY VAL SER SEQRES 7 A 336 ALA ALA GLY GLN VAL VAL SER LEU LYS VAL TRP LEU ILE SEQRES 8 A 336 ASP ASP ILE LEU GLU LYS ILE ASN SER HIS LEU PRO SER SEQRES 9 A 336 HIS ILE ARG ILE LEU GLY LEU LYS ARG VAL THR GLY GLY SEQRES 10 A 336 PHE ASN SER LYS ASN ARG CYS ASP ALA ARG THR TYR CYS SEQRES 11 A 336 TYR LEU LEU PRO THR PHE ALA PHE ALA HIS LYS ASP ARG SEQRES 12 A 336 ASP VAL GLN ASP GLU THR TYR ARG LEU SER ALA GLU THR SEQRES 13 A 336 LEU GLN GLN VAL ASN ARG LEU LEU ALA CYS TYR LYS GLY SEQRES 14 A 336 THR HIS ASN PHE HIS ASN PHE THR SER GLN LYS GLY PRO SEQRES 15 A 336 GLN ASP PRO SER ALA CYS ARG TYR ILE LEU GLU MET TYR SEQRES 16 A 336 CYS GLU GLU PRO PHE VAL ARG GLU GLY LEU GLU PHE ALA SEQRES 17 A 336 VAL ILE ARG VAL LYS GLY GLN SER PHE MET MET HIS GLN SEQRES 18 A 336 ILE ARG LYS MET VAL GLY LEU VAL VAL ALA ILE VAL LYS SEQRES 19 A 336 GLY TYR ALA PRO GLU SER VAL LEU GLU ARG SER TRP GLY SEQRES 20 A 336 THR GLU LYS VAL ASP VAL PRO LYS ALA PRO GLY LEU GLY SEQRES 21 A 336 LEU VAL LEU GLU ARG VAL HIS PHE GLU LYS TYR ASN GLN SEQRES 22 A 336 ARG PHE GLY ASN ASP GLY LEU HIS GLU PRO LEU ASP TRP SEQRES 23 A 336 ALA GLN GLU GLU GLY LYS VAL ALA ALA PHE LYS GLU GLU SEQRES 24 A 336 HIS ILE TYR PRO THR ILE ILE GLY THR GLU ARG ASP GLU SEQRES 25 A 336 ARG SER MET ALA GLN TRP LEU SER THR LEU PRO ILE HIS SEQRES 26 A 336 ASN PHE SER ALA THR ALA LEU THR ALA GLY GLY HET MES A 501 25 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM SO4 SULFATE ION FORMUL 2 MES C6 H13 N O4 S FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *154(H2 O) HELIX 1 1 THR A 111 SER A 123 1 13 HELIX 2 2 PRO A 127 ASP A 133 1 7 HELIX 3 3 MET A 134 SER A 138 5 5 HELIX 4 4 ASP A 165 HIS A 173 1 9 HELIX 5 5 PHE A 208 ALA A 211 5 4 HELIX 6 6 SER A 225 CYS A 238 1 14 HELIX 7 7 HIS A 246 THR A 249 5 4 HELIX 8 8 HIS A 292 LYS A 306 1 15 HELIX 9 9 SER A 312 TRP A 318 1 7 HELIX 10 10 TRP A 358 GLN A 360 5 3 HELIX 11 11 GLU A 361 HIS A 372 1 12 HELIX 12 12 HIS A 372 ARG A 385 1 14 HELIX 13 13 ARG A 385 THR A 393 1 9 HELIX 14 14 LEU A 394 HIS A 397 5 4 SHEET 1 A 7 GLN A 140 ARG A 141 0 SHEET 2 A 7 SER A 150 TRP A 161 -1 O SER A 157 N GLN A 140 SHEET 3 A 7 LEU A 333 HIS A 339 1 O LEU A 335 N ALA A 152 SHEET 4 A 7 ALA A 198 PRO A 206 -1 N ALA A 198 O HIS A 339 SHEET 5 A 7 LEU A 277 GLN A 287 -1 O ILE A 282 N TYR A 203 SHEET 6 A 7 CYS A 260 CYS A 268 -1 N TYR A 267 O ARG A 283 SHEET 7 A 7 GLY A 241 ASN A 244 -1 N GLY A 241 O ILE A 263 SHEET 1 B 7 ILE A 178 VAL A 186 0 SHEET 2 B 7 LYS A 83 TYR A 92 -1 N LEU A 89 O LEU A 181 SHEET 3 B 7 SER A 150 TRP A 161 -1 O LEU A 158 N ILE A 86 SHEET 4 B 7 LEU A 333 HIS A 339 1 O LEU A 335 N ALA A 152 SHEET 5 B 7 ALA A 198 PRO A 206 -1 N ALA A 198 O HIS A 339 SHEET 6 B 7 LEU A 277 GLN A 287 -1 O ILE A 282 N TYR A 203 SHEET 7 B 7 PHE A 272 ARG A 274 -1 N PHE A 272 O PHE A 279 SSBOND 1 CYS A 142 CYS A 196 1555 1555 2.09 SSBOND 2 CYS A 260 CYS A 260 1555 10555 2.10 SITE 1 AC1 11 ARG A 144 THR A 145 ASP A 146 VAL A 149 SITE 2 AC1 11 TYR A 201 PHE A 289 MET A 291 LEU A 333 SITE 3 AC1 11 SO4 A 502 HOH A 602 HOH A 618 SITE 1 AC2 6 ALA A 143 ARG A 144 ARG A 199 MES A 501 SITE 2 AC2 6 HOH A 629 HOH A 753 SITE 1 AC3 4 LYS A 85 SER A 138 GLN A 140 ARG A 223 SITE 1 AC4 4 LYS A 83 LYS A 159 ARG A 274 GLU A 275 SITE 1 AC5 4 HIS A 292 ARG A 295 LYS A 327 HOH A 744 CRYST1 51.860 51.860 446.200 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019283 0.011133 0.000000 0.00000 SCALE2 0.000000 0.022266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002241 0.00000