HEADER GENE REGULATION 21-JAN-13 4IUQ TITLE CRYSTAL STRUCTURE OF SHH1 SAWADEE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAWADEE HOMEODOMAIN HOMOLOG 1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: SHH1 SAWADEE DOMAIN; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: F9L1.16, AT1G15215, AT1G15215; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO KEYWDS TANDEM TUDOR, ZINC FINGER, MEDIATE INTERACTION, HISTONE, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR J.DU,D.J.PATEL REVDAT 4 20-SEP-23 4IUQ 1 REMARK SEQADV LINK REVDAT 3 10-JUL-13 4IUQ 1 JRNL REVDAT 2 15-MAY-13 4IUQ 1 JRNL REVDAT 1 01-MAY-13 4IUQ 0 JRNL AUTH J.A.LAW,J.DU,C.J.HALE,S.FENG,K.KRAJEWSKI,A.M.PALANCA, JRNL AUTH 2 B.D.STRAHL,D.J.PATEL,S.E.JACOBSEN JRNL TITL POLYMERASE IV OCCUPANCY AT RNA-DIRECTED DNA METHYLATION JRNL TITL 2 SITES REQUIRES SHH1. JRNL REF NATURE V. 498 385 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23636332 JRNL DOI 10.1038/NATURE12178 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 16030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0714 - 5.1019 1.00 2570 128 0.2059 0.2340 REMARK 3 2 5.1019 - 4.0508 1.00 2570 126 0.1569 0.2461 REMARK 3 3 4.0508 - 3.5391 1.00 2600 111 0.1873 0.2659 REMARK 3 4 3.5391 - 3.2157 1.00 2555 135 0.2152 0.2200 REMARK 3 5 3.2157 - 2.9853 1.00 2562 148 0.2348 0.3327 REMARK 3 6 2.9853 - 2.8093 0.94 2393 132 0.2933 0.3592 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 12.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.16940 REMARK 3 B22 (A**2) : -0.77140 REMARK 3 B33 (A**2) : -5.39800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2262 REMARK 3 ANGLE : 1.692 3055 REMARK 3 CHIRALITY : 0.102 339 REMARK 3 PLANARITY : 0.006 392 REMARK 3 DIHEDRAL : 17.566 876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 125:132) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3524 26.3378 4.5629 REMARK 3 T TENSOR REMARK 3 T11: 0.2351 T22: 0.3267 REMARK 3 T33: 0.1296 T12: -0.1263 REMARK 3 T13: 0.0222 T23: 0.1247 REMARK 3 L TENSOR REMARK 3 L11: 0.3091 L22: 0.6090 REMARK 3 L33: 0.0083 L12: 0.0381 REMARK 3 L13: -0.0045 L23: -0.0147 REMARK 3 S TENSOR REMARK 3 S11: -0.1281 S12: 0.1939 S13: 0.0573 REMARK 3 S21: -0.0241 S22: 0.1401 S23: 0.0720 REMARK 3 S31: -0.0258 S32: 0.0881 S33: -0.1983 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 133:145) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4947 20.1306 8.7257 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1897 REMARK 3 T33: 0.3213 T12: -0.0311 REMARK 3 T13: 0.0618 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.6109 L22: 0.0987 REMARK 3 L33: 1.3341 L12: -0.1463 REMARK 3 L13: 0.7292 L23: -0.3469 REMARK 3 S TENSOR REMARK 3 S11: -0.1143 S12: -0.1430 S13: 0.0583 REMARK 3 S21: 0.1298 S22: 0.0381 S23: 0.1656 REMARK 3 S31: -0.0799 S32: -0.2914 S33: -0.1338 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 146:155) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9833 21.4208 23.6851 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.2366 REMARK 3 T33: 0.2176 T12: 0.0347 REMARK 3 T13: -0.0080 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.4733 L22: 0.0511 REMARK 3 L33: 0.3353 L12: -0.0823 REMARK 3 L13: -0.3650 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: -0.3593 S12: -0.1393 S13: -0.0411 REMARK 3 S21: 0.2814 S22: -0.1796 S23: -0.0532 REMARK 3 S31: 0.1629 S32: 0.2802 S33: 0.0083 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 156:169) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9063 25.7080 14.1108 REMARK 3 T TENSOR REMARK 3 T11: 0.0167 T22: 0.5202 REMARK 3 T33: 0.2071 T12: -0.0141 REMARK 3 T13: -0.0351 T23: -0.0860 REMARK 3 L TENSOR REMARK 3 L11: 0.3000 L22: 0.1218 REMARK 3 L33: 0.1595 L12: 0.0665 REMARK 3 L13: 0.2051 L23: 0.0184 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: -0.0239 S13: 0.0068 REMARK 3 S21: 0.1210 S22: -0.2757 S23: 0.1595 REMARK 3 S31: 0.0359 S32: -0.3478 S33: 0.0349 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 170:181) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6915 20.6050 12.5467 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.2911 REMARK 3 T33: 0.2538 T12: -0.0343 REMARK 3 T13: 0.0516 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.2520 L22: 1.3722 REMARK 3 L33: 0.9215 L12: 0.2375 REMARK 3 L13: -0.0422 L23: -0.1700 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: 0.1053 S13: 0.2381 REMARK 3 S21: 0.2368 S22: -0.2466 S23: -0.2886 REMARK 3 S31: 0.0705 S32: 0.1121 S33: 0.0342 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 182:187) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8796 23.3377 -6.4245 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.0790 REMARK 3 T33: 0.3177 T12: 0.0190 REMARK 3 T13: -0.0205 T23: 0.0810 REMARK 3 L TENSOR REMARK 3 L11: 0.5972 L22: 0.1322 REMARK 3 L33: 3.1187 L12: -0.2577 REMARK 3 L13: -0.8404 L23: 0.1424 REMARK 3 S TENSOR REMARK 3 S11: 0.1093 S12: 0.0476 S13: -0.0314 REMARK 3 S21: -0.2634 S22: -0.1725 S23: 0.0829 REMARK 3 S31: -0.2499 S32: -0.0668 S33: -0.1267 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 188:198) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9065 15.5167 -12.6615 REMARK 3 T TENSOR REMARK 3 T11: 0.3433 T22: 0.2526 REMARK 3 T33: 0.2741 T12: 0.1103 REMARK 3 T13: -0.0110 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.6468 L22: 0.4069 REMARK 3 L33: 1.1163 L12: 0.4853 REMARK 3 L13: -0.1008 L23: -0.2767 REMARK 3 S TENSOR REMARK 3 S11: -0.2254 S12: 0.2027 S13: -0.3015 REMARK 3 S21: -0.0185 S22: 0.2375 S23: -0.2019 REMARK 3 S31: 0.4264 S32: 0.3387 S33: 0.1356 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 199:209) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1144 12.4557 -2.0338 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: -0.1650 REMARK 3 T33: 0.5567 T12: -0.2922 REMARK 3 T13: -0.0114 T23: -0.1951 REMARK 3 L TENSOR REMARK 3 L11: 0.0029 L22: 0.2446 REMARK 3 L33: 0.5978 L12: -0.0209 REMARK 3 L13: -0.0389 L23: 0.3820 REMARK 3 S TENSOR REMARK 3 S11: -0.2209 S12: -0.0666 S13: -0.0668 REMARK 3 S21: 0.3921 S22: -0.3705 S23: 0.6943 REMARK 3 S31: 0.0968 S32: -0.4982 S33: -0.5616 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 210:238) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2384 11.5448 -11.9841 REMARK 3 T TENSOR REMARK 3 T11: 0.3887 T22: 0.1788 REMARK 3 T33: 0.2930 T12: 0.0429 REMARK 3 T13: -0.0131 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.4279 L22: 0.8786 REMARK 3 L33: 1.3911 L12: 0.2117 REMARK 3 L13: -0.3069 L23: -0.2769 REMARK 3 S TENSOR REMARK 3 S11: -0.1599 S12: 0.2063 S13: -0.3954 REMARK 3 S21: -0.2665 S22: -0.0768 S23: 0.0262 REMARK 3 S31: 0.6528 S32: 0.0537 S33: 0.0279 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 239:248) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2757 5.3369 -2.7775 REMARK 3 T TENSOR REMARK 3 T11: 0.6261 T22: -0.0898 REMARK 3 T33: 0.3588 T12: -0.3959 REMARK 3 T13: 0.0780 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.3951 L22: 0.2160 REMARK 3 L33: 0.0754 L12: 0.2947 REMARK 3 L13: -0.1714 L23: -0.1275 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: 0.0815 S13: -0.4587 REMARK 3 S21: -0.1519 S22: 0.1541 S23: 0.0246 REMARK 3 S31: 0.0612 S32: -0.0011 S33: -0.0801 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 249:257) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9903 18.1613 -6.6562 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.3269 REMARK 3 T33: 0.1962 T12: 0.0468 REMARK 3 T13: 0.0408 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.1161 L22: 0.9141 REMARK 3 L33: 1.3209 L12: -0.2201 REMARK 3 L13: 0.2891 L23: -0.0090 REMARK 3 S TENSOR REMARK 3 S11: 0.1134 S12: -0.0849 S13: 0.0174 REMARK 3 S21: -0.0955 S22: 0.1424 S23: 0.0204 REMARK 3 S31: -0.0274 S32: 0.1639 S33: 0.0873 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 124:155) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1399 19.3613 36.8662 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.1511 REMARK 3 T33: 0.1894 T12: 0.0204 REMARK 3 T13: -0.0218 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.2418 L22: 0.6779 REMARK 3 L33: 0.4667 L12: -0.1730 REMARK 3 L13: 0.2145 L23: 0.1037 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.0713 S13: -0.1663 REMARK 3 S21: -0.0666 S22: 0.1620 S23: 0.0818 REMARK 3 S31: -0.1436 S32: -0.0407 S33: -0.0193 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 156:170) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7398 16.3387 42.3093 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.2025 REMARK 3 T33: 0.1797 T12: -0.0362 REMARK 3 T13: -0.0705 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.3874 L22: 0.6285 REMARK 3 L33: 0.7304 L12: 0.3211 REMARK 3 L13: -0.0807 L23: 0.2298 REMARK 3 S TENSOR REMARK 3 S11: 0.1363 S12: 0.0919 S13: -0.0647 REMARK 3 S21: 0.5290 S22: 0.1735 S23: -0.0644 REMARK 3 S31: 0.5753 S32: -0.0874 S33: -0.0087 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 171:198) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6242 17.4499 23.0494 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.2218 REMARK 3 T33: 0.1618 T12: 0.0221 REMARK 3 T13: -0.0131 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.5643 L22: 0.4525 REMARK 3 L33: 1.3836 L12: -0.0862 REMARK 3 L13: 0.0231 L23: 0.5725 REMARK 3 S TENSOR REMARK 3 S11: -0.1322 S12: 0.2694 S13: 0.2441 REMARK 3 S21: -0.0504 S22: -0.0849 S23: 0.1922 REMARK 3 S31: -0.4042 S32: 0.0278 S33: -0.0226 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 199:209) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6942 2.9854 25.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.5558 T22: 0.1801 REMARK 3 T33: 0.2617 T12: 0.0524 REMARK 3 T13: -0.0015 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 0.2683 L22: 0.4656 REMARK 3 L33: 0.5886 L12: 0.1267 REMARK 3 L13: 0.0577 L23: -0.2597 REMARK 3 S TENSOR REMARK 3 S11: -0.2033 S12: -0.0324 S13: -0.1678 REMARK 3 S21: 0.2128 S22: 0.1213 S23: -0.2560 REMARK 3 S31: 0.8568 S32: 0.3316 S33: 0.1001 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 210:232) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8171 7.6658 12.4101 REMARK 3 T TENSOR REMARK 3 T11: 0.3962 T22: 0.2746 REMARK 3 T33: 0.2619 T12: 0.0201 REMARK 3 T13: -0.0665 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.9641 L22: 0.2257 REMARK 3 L33: 0.1381 L12: -0.0623 REMARK 3 L13: -0.2277 L23: -0.0259 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: 0.1694 S13: -0.0637 REMARK 3 S21: -0.4197 S22: -0.0831 S23: -0.0016 REMARK 3 S31: 0.4916 S32: -0.1308 S33: 0.0664 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 233:248) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8935 3.1828 19.2829 REMARK 3 T TENSOR REMARK 3 T11: 0.3242 T22: 0.1657 REMARK 3 T33: 0.2945 T12: 0.0559 REMARK 3 T13: 0.0024 T23: -0.0955 REMARK 3 L TENSOR REMARK 3 L11: 1.2743 L22: 0.7363 REMARK 3 L33: 1.3105 L12: 0.2836 REMARK 3 L13: -0.0758 L23: -0.8257 REMARK 3 S TENSOR REMARK 3 S11: -0.1928 S12: -0.1379 S13: -0.3218 REMARK 3 S21: -0.1387 S22: -0.3119 S23: -0.4592 REMARK 3 S31: 0.2031 S32: 0.1547 S33: -0.0911 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 249:257) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5545 14.1328 18.4283 REMARK 3 T TENSOR REMARK 3 T11: 0.2632 T22: 0.3524 REMARK 3 T33: 0.2915 T12: -0.0243 REMARK 3 T13: -0.0083 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 0.3859 L22: 0.4328 REMARK 3 L33: 0.4550 L12: -0.2915 REMARK 3 L13: 0.0639 L23: -0.0022 REMARK 3 S TENSOR REMARK 3 S11: 0.0862 S12: 0.5371 S13: 0.1503 REMARK 3 S21: -0.0702 S22: 0.0479 S23: 0.0260 REMARK 3 S31: -0.0833 S32: -0.4706 S33: -0.0073 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2819 REMARK 200 MONOCHROMATOR : SI MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : 0.41200 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4IUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4F, 20% PEG 3350, 7.6 MM 4 REMARK 280 -CYCLOHEXYL-1-BUTYL-D-MALTOSIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.35400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.84550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.35400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.84550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 124 REMARK 465 PHE B 165 REMARK 465 ASP B 166 REMARK 465 ASN B 167 REMARK 465 ARG B 168 REMARK 465 GLU B 258 REMARK 465 GLU A 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 147 -169.78 -163.55 REMARK 500 ARG B 152 -35.81 -35.84 REMARK 500 ARG B 206 -156.60 -140.81 REMARK 500 GLU B 207 -97.78 -15.73 REMARK 500 ASN B 219 148.72 -173.01 REMARK 500 ASP B 226 -151.04 -103.95 REMARK 500 ARG B 229 139.67 -173.28 REMARK 500 ASP A 166 -175.29 -66.72 REMARK 500 GLU A 207 -60.73 -29.55 REMARK 500 ASN A 219 148.29 -180.00 REMARK 500 ASN A 242 15.00 49.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 191 SG REMARK 620 2 HIS B 225 NE2 105.9 REMARK 620 3 CYS B 230 SG 124.5 95.8 REMARK 620 4 CYS B 232 SG 111.9 119.8 99.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 191 SG REMARK 620 2 HIS A 225 NE2 99.5 REMARK 620 3 CYS A 230 SG 100.1 90.0 REMARK 620 4 CYS A 232 SG 135.9 112.5 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IUP RELATED DB: PDB REMARK 900 RELATED ID: 4IUR RELATED DB: PDB REMARK 900 RELATED ID: 4IUT RELATED DB: PDB REMARK 900 RELATED ID: 4IUU RELATED DB: PDB REMARK 900 RELATED ID: 4IUV RELATED DB: PDB DBREF 4IUQ B 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 DBREF 4IUQ A 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 SEQADV 4IUQ SER B 124 UNP Q9XI47 EXPRESSION TAG SEQADV 4IUQ SER A 124 UNP Q9XI47 EXPRESSION TAG SEQRES 1 B 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 B 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 B 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 B 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 B 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 B 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 B 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 B 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 B 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 B 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 B 135 ARG ARG PRO GLU GLU SEQRES 1 A 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 A 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 A 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 A 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 A 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 A 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 A 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 A 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 A 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 A 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 A 135 ARG ARG PRO GLU GLU HET ZN B 301 1 HET CVM B 302 33 HET ZN A 301 1 HET CVM A 302 33 HETNAM ZN ZINC ION HETNAM CVM CYMAL-4 HETSYN CVM 4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CVM GLUCOPYRANOSIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CVM 2(C22 H40 O11) HELIX 1 1 VAL B 175 SER B 178 1 4 HELIX 2 2 GLU B 187 VAL B 194 5 8 HELIX 3 3 GLY B 248 GLU B 250 5 3 HELIX 4 4 ASP A 166 ASP A 170 5 5 HELIX 5 5 VAL A 175 SER A 178 1 4 HELIX 6 6 GLU A 187 VAL A 194 5 8 HELIX 7 7 GLY A 248 GLU A 250 5 3 SHEET 1 A 5 ASP B 170 ASN B 174 0 SHEET 2 A 5 LEU B 156 PHE B 162 -1 N VAL B 160 O GLU B 171 SHEET 3 A 5 TRP B 139 VAL B 150 -1 N LEU B 146 O ARG B 159 SHEET 4 A 5 PHE B 129 LYS B 132 -1 N ALA B 131 O TYR B 140 SHEET 5 A 5 VAL B 179 GLU B 181 -1 O ARG B 180 N GLU B 130 SHEET 1 B 6 ILE B 184 PRO B 185 0 SHEET 2 B 6 ILE B 252 ARG B 254 -1 O ARG B 254 N ILE B 184 SHEET 3 B 6 LEU B 199 GLU B 205 -1 N LEU B 201 O CYS B 253 SHEET 4 B 6 ALA B 210 LYS B 221 -1 O CYS B 213 N CYS B 202 SHEET 5 B 6 VAL B 233 TYR B 238 -1 O LEU B 235 N LEU B 218 SHEET 6 B 6 GLU B 244 LEU B 247 -1 O LEU B 247 N PHE B 234 SHEET 1 C 5 GLU A 171 ASN A 174 0 SHEET 2 C 5 LEU A 156 PHE A 162 -1 N VAL A 160 O GLU A 171 SHEET 3 C 5 TRP A 139 VAL A 150 -1 N LEU A 146 O ARG A 159 SHEET 4 C 5 PHE A 129 LYS A 132 -1 N ALA A 131 O TYR A 140 SHEET 5 C 5 VAL A 179 GLU A 181 -1 O ARG A 180 N GLU A 130 SHEET 1 D 6 ILE A 184 PRO A 185 0 SHEET 2 D 6 ILE A 252 ARG A 254 -1 O ARG A 254 N ILE A 184 SHEET 3 D 6 LEU A 199 GLU A 205 -1 N LEU A 201 O CYS A 253 SHEET 4 D 6 ALA A 210 LYS A 221 -1 O CYS A 213 N CYS A 202 SHEET 5 D 6 VAL A 233 TYR A 238 -1 O LEU A 235 N LEU A 218 SHEET 6 D 6 GLU A 244 LEU A 247 -1 O GLU A 245 N VAL A 236 LINK SG CYS B 191 ZN ZN B 301 1555 1555 2.36 LINK NE2 HIS B 225 ZN ZN B 301 1555 1555 2.49 LINK SG CYS B 230 ZN ZN B 301 1555 1555 2.38 LINK SG CYS B 232 ZN ZN B 301 1555 1555 2.62 LINK SG CYS A 191 ZN ZN A 301 1555 1555 2.27 LINK NE2 HIS A 225 ZN ZN A 301 1555 1555 2.43 LINK SG CYS A 230 ZN ZN A 301 1555 1555 2.43 LINK SG CYS A 232 ZN ZN A 301 1555 1555 2.50 SITE 1 AC1 4 CYS B 191 HIS B 225 CYS B 230 CYS B 232 SITE 1 AC2 5 THR A 147 TYR A 148 PHE B 145 LYS B 176 SITE 2 AC2 5 VAL B 179 SITE 1 AC3 4 CYS A 191 HIS A 225 CYS A 230 CYS A 232 SITE 1 AC4 3 PHE A 129 VAL A 175 VAL A 179 CRYST1 54.708 117.691 53.409 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018723 0.00000