HEADER GENE REGULATION 21-JAN-13 4IUV TITLE CRYSTAL STRUCTURE OF SHH1 SAWADEE DOMAIN IN COMPLEX WITH H3K4ME1K9ME1 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAWADEE HOMEODOMAIN HOMOLOG 1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: SHH1 SAWADEE DOMAIN (UNP RESIDUES 125-258); COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.2, H3(1-15)K9ME3; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: H3(1-15)K4ME1K9ME1 PEPTIDE (UNP RESIDUES 2-16); COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: F9L1.16, AT1G15215, AT1G15215; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 14 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 15 ORGANISM_TAXID: 3702; SOURCE 16 OTHER_DETAILS: H3(1-15)K4ME1K9ME1 PEPTIDE WAS SYNTHESIZED KEYWDS TANDEM TUDOR, ZINC FINGER, H3K9ME2, MEDIATE INTERACTION, HISTONE, KEYWDS 2 METHYLATION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR J.DU,D.J.PATEL REVDAT 4 20-SEP-23 4IUV 1 REMARK SEQADV LINK REVDAT 3 10-JUL-13 4IUV 1 JRNL REVDAT 2 15-MAY-13 4IUV 1 JRNL REVDAT 1 01-MAY-13 4IUV 0 JRNL AUTH J.A.LAW,J.DU,C.J.HALE,S.FENG,K.KRAJEWSKI,A.M.PALANCA, JRNL AUTH 2 B.D.STRAHL,D.J.PATEL,S.E.JACOBSEN JRNL TITL POLYMERASE IV OCCUPANCY AT RNA-DIRECTED DNA METHYLATION JRNL TITL 2 SITES REQUIRES SHH1. JRNL REF NATURE V. 498 385 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23636332 JRNL DOI 10.1038/NATURE12178 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5296 - 4.0374 1.00 2941 143 0.1801 0.2079 REMARK 3 2 4.0374 - 3.2050 1.00 2808 135 0.2035 0.2597 REMARK 3 3 3.2050 - 2.8000 1.00 2762 147 0.2664 0.3463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 15.91 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.040 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73230 REMARK 3 B22 (A**2) : 4.19040 REMARK 3 B33 (A**2) : -5.92270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2309 REMARK 3 ANGLE : 1.002 3111 REMARK 3 CHIRALITY : 0.056 341 REMARK 3 PLANARITY : 0.002 402 REMARK 3 DIHEDRAL : 16.681 890 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 125:138) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1316 -19.6869 7.4293 REMARK 3 T TENSOR REMARK 3 T11: 0.3261 T22: 0.2391 REMARK 3 T33: 0.1247 T12: -0.0041 REMARK 3 T13: -0.0785 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 9.1110 L22: 6.4563 REMARK 3 L33: 5.4255 L12: -5.0030 REMARK 3 L13: 2.4899 L23: -1.6723 REMARK 3 S TENSOR REMARK 3 S11: -0.1214 S12: -0.0934 S13: -0.3427 REMARK 3 S21: 0.5738 S22: 0.2602 S23: 0.0277 REMARK 3 S31: 0.2608 S32: -0.1272 S33: -0.1792 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 139:145) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1037 -20.9154 7.7165 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.2831 REMARK 3 T33: 0.2437 T12: 0.0496 REMARK 3 T13: -0.0676 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 5.2808 L22: 4.0589 REMARK 3 L33: 3.7201 L12: -0.8246 REMARK 3 L13: -2.9184 L23: -0.7688 REMARK 3 S TENSOR REMARK 3 S11: -0.3913 S12: -0.0650 S13: -0.0262 REMARK 3 S21: -1.1133 S22: -0.0717 S23: 0.3916 REMARK 3 S31: 0.6943 S32: -0.0018 S33: 0.0594 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 146:155) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3710 -14.2658 23.9476 REMARK 3 T TENSOR REMARK 3 T11: 0.2452 T22: 0.3711 REMARK 3 T33: 0.2033 T12: -0.0404 REMARK 3 T13: -0.0291 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 6.7977 L22: 7.4852 REMARK 3 L33: 2.1922 L12: 2.3354 REMARK 3 L13: 5.4175 L23: 3.7838 REMARK 3 S TENSOR REMARK 3 S11: -0.1973 S12: 0.1949 S13: 0.4775 REMARK 3 S21: 0.5328 S22: 0.2171 S23: 0.4123 REMARK 3 S31: -0.6345 S32: 0.4937 S33: 0.0869 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 156:169) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9010 -22.3166 14.3689 REMARK 3 T TENSOR REMARK 3 T11: 0.4440 T22: 0.4195 REMARK 3 T33: 0.0964 T12: 0.0073 REMARK 3 T13: 0.0199 T23: 0.0704 REMARK 3 L TENSOR REMARK 3 L11: 8.5810 L22: 2.7230 REMARK 3 L33: 2.1756 L12: 0.0304 REMARK 3 L13: 2.1088 L23: 1.4576 REMARK 3 S TENSOR REMARK 3 S11: -0.3591 S12: -0.6592 S13: -1.6372 REMARK 3 S21: -0.2740 S22: -0.4545 S23: 0.5743 REMARK 3 S31: 0.4533 S32: -0.4040 S33: 0.2782 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 170:181) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8529 -16.6481 12.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.2750 REMARK 3 T33: 0.1997 T12: 0.0736 REMARK 3 T13: 0.0337 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.8914 L22: 2.5847 REMARK 3 L33: 8.7504 L12: 1.8389 REMARK 3 L13: -1.3422 L23: 0.1953 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: -0.2561 S13: 0.0667 REMARK 3 S21: 0.1561 S22: -0.0667 S23: 0.0034 REMARK 3 S31: -0.4381 S32: 0.1565 S33: -0.0110 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 182:187) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5283 -16.4632 -6.3219 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.3457 REMARK 3 T33: 0.2874 T12: 0.0118 REMARK 3 T13: 0.0059 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.5498 L22: 4.3462 REMARK 3 L33: 2.0123 L12: 0.5489 REMARK 3 L13: -6.6050 L23: -3.0652 REMARK 3 S TENSOR REMARK 3 S11: -0.4880 S12: 1.1761 S13: -0.1365 REMARK 3 S21: -0.6295 S22: -0.0674 S23: 0.4458 REMARK 3 S31: -0.3271 S32: -1.0355 S33: 0.0858 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 188:198) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5956 -11.4086 -12.2118 REMARK 3 T TENSOR REMARK 3 T11: 0.3098 T22: 0.2812 REMARK 3 T33: 0.2182 T12: 0.0335 REMARK 3 T13: 0.0776 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.4051 L22: 3.1676 REMARK 3 L33: 5.7964 L12: 1.2338 REMARK 3 L13: 2.6639 L23: 1.2840 REMARK 3 S TENSOR REMARK 3 S11: -0.1937 S12: 0.0106 S13: 0.6030 REMARK 3 S21: -0.2128 S22: -0.0608 S23: 0.2437 REMARK 3 S31: -0.5833 S32: 0.1177 S33: 0.3866 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 199:209) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5094 -27.4746 -1.4106 REMARK 3 T TENSOR REMARK 3 T11: -0.6846 T22: 0.4463 REMARK 3 T33: 0.5301 T12: 0.5978 REMARK 3 T13: 0.0162 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 3.9447 L22: 3.1089 REMARK 3 L33: 2.5387 L12: -1.2099 REMARK 3 L13: -0.1553 L23: 1.4729 REMARK 3 S TENSOR REMARK 3 S11: 0.2760 S12: -0.4537 S13: -0.8251 REMARK 3 S21: 0.8051 S22: 0.2354 S23: -1.5988 REMARK 3 S31: 2.9712 S32: 0.4355 S33: -0.0201 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 210:232) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1925 -19.0199 -12.8015 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.3697 REMARK 3 T33: 0.2262 T12: 0.0170 REMARK 3 T13: 0.0011 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 1.8413 L22: 2.7806 REMARK 3 L33: 4.3971 L12: 0.6077 REMARK 3 L13: -0.5336 L23: -0.9986 REMARK 3 S TENSOR REMARK 3 S11: -0.1597 S12: 0.3903 S13: -0.0728 REMARK 3 S21: -0.1840 S22: 0.2613 S23: -0.3766 REMARK 3 S31: 0.2050 S32: 0.2155 S33: -0.0064 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 233:243) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7184 -20.1980 -2.6674 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.6428 REMARK 3 T33: 0.3185 T12: 0.1225 REMARK 3 T13: -0.1006 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 0.2937 L22: 2.5095 REMARK 3 L33: 6.7538 L12: 0.2196 REMARK 3 L13: 1.3669 L23: -1.1639 REMARK 3 S TENSOR REMARK 3 S11: 0.1794 S12: -0.4837 S13: 0.6499 REMARK 3 S21: 0.5281 S22: 0.5133 S23: -0.4796 REMARK 3 S31: -0.5671 S32: 0.7788 S33: -0.2650 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 244:257) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9122 -18.5718 -6.9706 REMARK 3 T TENSOR REMARK 3 T11: 0.2161 T22: 0.2381 REMARK 3 T33: 0.1583 T12: 0.0552 REMARK 3 T13: 0.0115 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 6.7147 L22: 2.0160 REMARK 3 L33: 8.2074 L12: 0.5301 REMARK 3 L13: -0.7940 L23: 0.6004 REMARK 3 S TENSOR REMARK 3 S11: -0.6042 S12: -0.0929 S13: -0.2673 REMARK 3 S21: 0.3269 S22: 0.6221 S23: 0.0415 REMARK 3 S31: -0.3103 S32: 0.5951 S33: -0.0490 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 124:132) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5035 -42.9869 28.0774 REMARK 3 T TENSOR REMARK 3 T11: 0.2574 T22: 0.4332 REMARK 3 T33: 0.2441 T12: 0.0674 REMARK 3 T13: -0.0650 T23: -0.1369 REMARK 3 L TENSOR REMARK 3 L11: 5.4513 L22: 4.4949 REMARK 3 L33: 7.9515 L12: 1.0525 REMARK 3 L13: 3.1379 L23: 1.7700 REMARK 3 S TENSOR REMARK 3 S11: 0.0908 S12: 0.7756 S13: -0.0474 REMARK 3 S21: 0.0290 S22: 0.0021 S23: 0.0156 REMARK 3 S31: 0.5803 S32: -0.7790 S33: 0.0786 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 133:181) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8607 -38.5548 38.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.2341 REMARK 3 T33: 0.2161 T12: 0.0104 REMARK 3 T13: -0.0554 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 1.5246 L22: 2.8533 REMARK 3 L33: 4.7875 L12: -0.9914 REMARK 3 L13: -2.0938 L23: 1.8605 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: 0.0716 S13: -0.0633 REMARK 3 S21: 0.0603 S22: -0.0020 S23: -0.1459 REMARK 3 S31: -0.0325 S32: 0.3673 S33: -0.1143 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 182:198) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5124 -43.1254 13.6645 REMARK 3 T TENSOR REMARK 3 T11: 0.5286 T22: 0.6358 REMARK 3 T33: 0.3203 T12: -0.0252 REMARK 3 T13: -0.0085 T23: -0.1637 REMARK 3 L TENSOR REMARK 3 L11: 1.9491 L22: 0.5320 REMARK 3 L33: 3.6417 L12: -0.6663 REMARK 3 L13: -1.9358 L23: -0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.0956 S12: 1.0246 S13: -0.2877 REMARK 3 S21: -0.9046 S22: -0.0762 S23: 0.2315 REMARK 3 S31: 0.8389 S32: -0.5968 S33: 0.1533 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 199:209) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1983 -41.7711 25.4844 REMARK 3 T TENSOR REMARK 3 T11: 0.1031 T22: 0.8061 REMARK 3 T33: 0.4547 T12: 0.0149 REMARK 3 T13: -0.0601 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 9.4357 L22: 0.5545 REMARK 3 L33: 3.6201 L12: -0.9685 REMARK 3 L13: 5.5129 L23: -0.2572 REMARK 3 S TENSOR REMARK 3 S11: 0.2042 S12: -1.0287 S13: 0.9699 REMARK 3 S21: -0.3374 S22: -0.1862 S23: -0.7915 REMARK 3 S31: -0.5740 S32: 1.4177 S33: 0.1944 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 210:221) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8154 -37.5337 18.3747 REMARK 3 T TENSOR REMARK 3 T11: 0.2486 T22: 0.4238 REMARK 3 T33: 0.3320 T12: -0.0444 REMARK 3 T13: 0.0373 T23: -0.0818 REMARK 3 L TENSOR REMARK 3 L11: 3.2128 L22: 3.4806 REMARK 3 L33: 5.6715 L12: -0.1844 REMARK 3 L13: 0.2801 L23: -2.5183 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: 0.7462 S13: -0.0296 REMARK 3 S21: -0.2091 S22: 0.2855 S23: -0.2220 REMARK 3 S31: 0.1180 S32: 0.8958 S33: -0.2213 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 222:248) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1397 -41.1492 13.3465 REMARK 3 T TENSOR REMARK 3 T11: 0.4033 T22: 0.5952 REMARK 3 T33: 0.3788 T12: 0.0605 REMARK 3 T13: 0.1291 T23: -0.1326 REMARK 3 L TENSOR REMARK 3 L11: 2.0482 L22: 5.4372 REMARK 3 L33: 8.3378 L12: 1.2743 REMARK 3 L13: 1.2207 L23: 3.5159 REMARK 3 S TENSOR REMARK 3 S11: -0.2351 S12: 0.7924 S13: -0.2579 REMARK 3 S21: -0.5623 S22: 0.0151 S23: -0.0391 REMARK 3 S31: 0.6497 S32: 0.3863 S33: 0.1150 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 249:257) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9353 -43.1877 17.9647 REMARK 3 T TENSOR REMARK 3 T11: 0.3750 T22: 0.4843 REMARK 3 T33: 0.2600 T12: 0.0107 REMARK 3 T13: 0.0044 T23: -0.1222 REMARK 3 L TENSOR REMARK 3 L11: 6.0249 L22: 4.6250 REMARK 3 L33: 2.1717 L12: 5.2396 REMARK 3 L13: 1.4051 L23: 0.4338 REMARK 3 S TENSOR REMARK 3 S11: -0.5423 S12: 0.5324 S13: -0.5861 REMARK 3 S21: -0.1526 S22: 0.3720 S23: 0.1425 REMARK 3 S31: 0.4494 S32: -0.2271 S33: -0.1013 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -6.1185 -47.8668 30.7550 REMARK 3 T TENSOR REMARK 3 T11: 0.3090 T22: 0.4299 REMARK 3 T33: 0.6701 T12: -0.1915 REMARK 3 T13: -0.0277 T23: -0.0581 REMARK 3 L TENSOR REMARK 3 L11: 4.1160 L22: 1.8005 REMARK 3 L33: 4.8875 L12: -0.5629 REMARK 3 L13: 0.8570 L23: -0.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.4005 S12: 0.0505 S13: -1.2433 REMARK 3 S21: 0.1130 S22: 1.0828 S23: -0.5028 REMARK 3 S31: 0.7319 S32: 0.8900 S33: -0.3684 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8999 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : 0.51400 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4IUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4F, 20% PEG 3350, 7.6 MM 4 REMARK 280 -CYCLOHEXYL-1-BUTYL-D-MALTOSIDE , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 59.17750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.26650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 59.17750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.26650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 124 REMARK 465 PHE B 165 REMARK 465 ASP B 166 REMARK 465 ASN B 167 REMARK 465 ARG B 168 REMARK 465 GLU B 258 REMARK 465 GLU A 258 REMARK 465 ALA C 1 REMARK 465 ARG C 2 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 191 -19.06 -43.53 REMARK 500 GLU B 207 -99.98 -32.97 REMARK 500 ASP B 226 -148.50 -98.37 REMARK 500 LEU B 240 -74.52 -52.70 REMARK 500 THR A 147 -174.52 175.23 REMARK 500 ARG A 152 -6.49 -58.87 REMARK 500 GLN A 209 152.81 171.76 REMARK 500 ASP A 226 -158.55 -76.42 REMARK 500 SER C 10 -84.29 -68.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CVM B 302 REMARK 610 CVM A 302 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 191 SG REMARK 620 2 HIS B 225 NE2 107.9 REMARK 620 3 CYS B 230 SG 127.9 109.2 REMARK 620 4 CYS B 232 SG 110.7 90.6 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 191 SG REMARK 620 2 HIS A 225 NE2 94.6 REMARK 620 3 CYS A 230 SG 111.7 92.5 REMARK 620 4 CYS A 232 SG 128.4 115.2 108.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IUP RELATED DB: PDB REMARK 900 RELATED ID: 4IUQ RELATED DB: PDB REMARK 900 RELATED ID: 4IUR RELATED DB: PDB REMARK 900 RELATED ID: 4IUT RELATED DB: PDB REMARK 900 RELATED ID: 4IUU RELATED DB: PDB DBREF 4IUV B 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 DBREF 4IUV A 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 DBREF 4IUV C 1 15 UNP P59226 H32_ARATH 2 16 SEQADV 4IUV SER B 124 UNP Q9XI47 EXPRESSION TAG SEQADV 4IUV SER A 124 UNP Q9XI47 EXPRESSION TAG SEQRES 1 B 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 B 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 B 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 B 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 B 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 B 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 B 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 B 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 B 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 B 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 B 135 ARG ARG PRO GLU GLU SEQRES 1 A 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 A 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 A 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 A 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 A 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 A 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 A 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 A 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 A 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 A 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 A 135 ARG ARG PRO GLU GLU SEQRES 1 C 15 ALA ARG THR MLZ GLN THR ALA ARG MLZ SER THR GLY GLY SEQRES 2 C 15 LYS ALA MODRES 4IUV MLZ C 4 LYS N-METHYL-LYSINE MODRES 4IUV MLZ C 9 LYS N-METHYL-LYSINE HET MLZ C 4 10 HET MLZ C 9 10 HET ZN B 301 1 HET CVM B 302 22 HET ZN A 301 1 HET CVM A 302 22 HETNAM MLZ N-METHYL-LYSINE HETNAM ZN ZINC ION HETNAM CVM CYMAL-4 HETSYN CVM 4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CVM GLUCOPYRANOSIDE FORMUL 3 MLZ 2(C7 H16 N2 O2) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CVM 2(C22 H40 O11) FORMUL 8 HOH *43(H2 O) HELIX 1 1 VAL B 175 SER B 178 1 4 HELIX 2 2 GLU B 187 VAL B 194 5 8 HELIX 3 3 ASP A 166 ASP A 170 5 5 HELIX 4 4 GLU A 187 VAL A 194 5 8 HELIX 5 5 GLY A 248 GLU A 250 5 3 SHEET 1 A 5 ASP B 170 ASN B 174 0 SHEET 2 A 5 LEU B 156 PHE B 162 -1 N VAL B 160 O GLU B 171 SHEET 3 A 5 TRP B 139 VAL B 150 -1 N THR B 147 O ARG B 159 SHEET 4 A 5 PHE B 129 LYS B 132 -1 N ALA B 131 O TYR B 140 SHEET 5 A 5 VAL B 179 GLU B 181 -1 O ARG B 180 N GLU B 130 SHEET 1 B 6 ILE B 184 PRO B 185 0 SHEET 2 B 6 ILE B 252 ARG B 254 -1 O ARG B 254 N ILE B 184 SHEET 3 B 6 LEU B 199 GLU B 205 -1 N LEU B 201 O CYS B 253 SHEET 4 B 6 ALA B 210 LYS B 221 -1 O LEU B 211 N GLN B 204 SHEET 5 B 6 VAL B 233 TYR B 238 -1 O LEU B 235 N LEU B 218 SHEET 6 B 6 GLU B 244 GLY B 248 -1 O LEU B 247 N PHE B 234 SHEET 1 C 5 GLU A 171 ASN A 174 0 SHEET 2 C 5 LEU A 156 PHE A 162 -1 N VAL A 160 O GLU A 171 SHEET 3 C 5 TRP A 139 VAL A 150 -1 N SER A 143 O ARG A 161 SHEET 4 C 5 PHE A 129 LYS A 132 -1 N ALA A 131 O TYR A 140 SHEET 5 C 5 VAL A 179 GLU A 181 -1 O ARG A 180 N GLU A 130 SHEET 1 D 6 ILE A 184 PRO A 185 0 SHEET 2 D 6 ILE A 252 ARG A 254 -1 O ARG A 254 N ILE A 184 SHEET 3 D 6 LEU A 199 GLU A 205 -1 N LEU A 201 O CYS A 253 SHEET 4 D 6 ALA A 210 LYS A 221 -1 O CYS A 213 N CYS A 202 SHEET 5 D 6 VAL A 233 TYR A 238 -1 O LEU A 235 N LEU A 218 SHEET 6 D 6 GLU A 244 LEU A 247 -1 O LEU A 247 N PHE A 234 LINK C THR C 3 N MLZ C 4 1555 1555 1.33 LINK C MLZ C 4 N GLN C 5 1555 1555 1.32 LINK C ARG C 8 N MLZ C 9 1555 1555 1.33 LINK C MLZ C 9 N SER C 10 1555 1555 1.32 LINK SG CYS B 191 ZN ZN B 301 1555 1555 2.47 LINK NE2 HIS B 225 ZN ZN B 301 1555 1555 2.22 LINK SG CYS B 230 ZN ZN B 301 1555 1555 2.51 LINK SG CYS B 232 ZN ZN B 301 1555 1555 2.58 LINK SG CYS A 191 ZN ZN A 301 1555 1555 2.59 LINK NE2 HIS A 225 ZN ZN A 301 1555 1555 2.44 LINK SG CYS A 230 ZN ZN A 301 1555 1555 2.62 LINK SG CYS A 232 ZN ZN A 301 1555 1555 2.57 CISPEP 1 SER A 163 GLY A 164 0 -9.95 SITE 1 AC1 4 CYS B 191 HIS B 225 CYS B 230 CYS B 232 SITE 1 AC2 5 THR A 147 PHE B 129 PHE B 145 LYS B 176 SITE 2 AC2 5 VAL B 179 SITE 1 AC3 4 CYS A 191 HIS A 225 CYS A 230 CYS A 232 SITE 1 AC4 6 PHE A 129 PHE A 145 VAL A 175 LYS A 176 SITE 2 AC4 6 VAL A 179 THR B 147 CRYST1 118.355 54.533 53.109 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018829 0.00000