HEADER LIGASE 24-JAN-13 4IWX TITLE RIMK STRUCTURE AT 2.85A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B0852, JW0836, RIMK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ATP-GRASP FOLD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SHI,G.ZHAO,Z.JIN,N.M.ALLEWELL,M.TUCHMAN REVDAT 4 20-SEP-23 4IWX 1 REMARK SEQADV REVDAT 3 15-NOV-17 4IWX 1 REMARK REVDAT 2 09-OCT-13 4IWX 1 JRNL REVDAT 1 08-MAY-13 4IWX 0 JRNL AUTH G.ZHAO,Z.JIN,Y.WANG,N.M.ALLEWELL,M.TUCHMAN,D.SHI JRNL TITL STRUCTURE AND FUNCTION OF ESCHERICHIA COLI RIMK, AN JRNL TITL 2 ATP-GRASP FOLD, L-GLUTAMYL LIGASE ENZYME. JRNL REF PROTEINS V. 81 1847 2013 JRNL REFN ISSN 0887-3585 JRNL PMID 23609986 JRNL DOI 10.1002/PROT.24311 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 20062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9926 - 5.4570 0.99 2966 156 0.2225 0.2541 REMARK 3 2 5.4570 - 4.3324 1.00 2799 148 0.1743 0.1765 REMARK 3 3 4.3324 - 3.7850 1.00 2756 145 0.1867 0.2636 REMARK 3 4 3.7850 - 3.4391 0.99 2716 142 0.2206 0.2668 REMARK 3 5 3.4391 - 3.1926 1.00 2726 142 0.2573 0.3253 REMARK 3 6 3.1926 - 3.0044 0.99 2671 138 0.2875 0.3444 REMARK 3 7 3.0044 - 2.8540 0.90 2429 128 0.3215 0.4019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2345 REMARK 3 ANGLE : 1.475 3180 REMARK 3 CHIRALITY : 0.097 366 REMARK 3 PLANARITY : 0.009 407 REMARK 3 DIHEDRAL : 17.386 886 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -1:99) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8388 74.2455 73.7926 REMARK 3 T TENSOR REMARK 3 T11: 0.3849 T22: 0.4364 REMARK 3 T33: 0.4084 T12: -0.0588 REMARK 3 T13: -0.0279 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 3.6669 L22: 3.3692 REMARK 3 L33: 3.1749 L12: -2.5502 REMARK 3 L13: 0.1570 L23: -1.2761 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: -0.2217 S13: 0.0026 REMARK 3 S21: 0.0991 S22: 0.1846 S23: 0.0201 REMARK 3 S31: -0.2513 S32: 0.1826 S33: -0.0948 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 100:115) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5355 56.1094 59.8183 REMARK 3 T TENSOR REMARK 3 T11: 0.5876 T22: 0.4319 REMARK 3 T33: 0.4838 T12: -0.0200 REMARK 3 T13: -0.0028 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 2.9464 L22: 4.8873 REMARK 3 L33: 3.3964 L12: -2.2657 REMARK 3 L13: 1.8467 L23: -1.2041 REMARK 3 S TENSOR REMARK 3 S11: 0.1806 S12: -0.2176 S13: 0.4494 REMARK 3 S21: -0.7466 S22: -0.1907 S23: -0.0973 REMARK 3 S31: -0.3715 S32: 0.2394 S33: 0.0644 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 116:180) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1672 42.8492 54.8023 REMARK 3 T TENSOR REMARK 3 T11: 0.4712 T22: 0.3833 REMARK 3 T33: 0.5164 T12: 0.0317 REMARK 3 T13: -0.0488 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.8139 L22: 3.7744 REMARK 3 L33: 4.2049 L12: 2.8434 REMARK 3 L13: -0.0394 L23: 0.4132 REMARK 3 S TENSOR REMARK 3 S11: 0.1331 S12: 0.1776 S13: -0.4416 REMARK 3 S21: -0.6184 S22: 0.2537 S23: 0.1268 REMARK 3 S31: 0.0284 S32: 0.1470 S33: -0.3211 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 181:276) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3755 51.5287 75.1133 REMARK 3 T TENSOR REMARK 3 T11: 0.4513 T22: 0.6990 REMARK 3 T33: 0.5699 T12: -0.0271 REMARK 3 T13: -0.0755 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.6218 L22: 2.5162 REMARK 3 L33: 4.2076 L12: -0.8247 REMARK 3 L13: -0.3169 L23: 0.6092 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: -0.0645 S13: -0.3166 REMARK 3 S21: 0.0055 S22: -0.0039 S23: 0.1833 REMARK 3 S31: 0.4418 S32: -0.1750 S33: -0.0888 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 277:292) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0968 72.2769 81.9804 REMARK 3 T TENSOR REMARK 3 T11: 0.5404 T22: 0.6513 REMARK 3 T33: 0.5982 T12: -0.0055 REMARK 3 T13: -0.0454 T23: -0.1617 REMARK 3 L TENSOR REMARK 3 L11: 6.9952 L22: 2.1450 REMARK 3 L33: 6.1593 L12: 0.0995 REMARK 3 L13: -1.3035 L23: -1.4529 REMARK 3 S TENSOR REMARK 3 S11: -0.2880 S12: -0.1144 S13: 0.0025 REMARK 3 S21: 0.9595 S22: 0.7121 S23: -1.5364 REMARK 3 S31: -0.8372 S32: 0.5831 S33: -0.5917 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20166 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 15.70 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.63900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: 4IWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, AND 1.8 M AMMONIUM REMARK 280 SULFATE , PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.07967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.15933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.07967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 114.15933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.07967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 114.15933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.07967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 114.15933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -409.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -64.90100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 112.41183 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 114.15933 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -64.90100 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 112.41183 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 114.15933 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 GLU A 293 REMARK 465 TYR A 294 REMARK 465 CYS A 295 REMARK 465 LEU A 296 REMARK 465 LYS A 297 REMARK 465 THR A 298 REMARK 465 GLY A 299 REMARK 465 GLY A 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 24 N GLY A 26 2.10 REMARK 500 NH1 ARG A 102 OE2 GLU A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 83.89 47.94 REMARK 500 ARG A 25 35.97 -6.23 REMARK 500 ASN A 42 -136.00 -70.82 REMARK 500 PRO A 43 84.69 -22.25 REMARK 500 ALA A 44 136.34 -18.93 REMARK 500 ALA A 45 -107.21 75.67 REMARK 500 SER A 46 141.35 65.29 REMARK 500 HIS A 57 106.43 79.07 REMARK 500 ARG A 64 53.69 -150.20 REMARK 500 ILE A 69 20.45 -143.81 REMARK 500 ASN A 89 107.02 76.85 REMARK 500 HIS A 121 -60.33 -140.86 REMARK 500 ASP A 124 -23.32 68.64 REMARK 500 VAL A 133 -28.26 76.36 REMARK 500 VAL A 143 -54.89 -128.75 REMARK 500 GLU A 144 91.44 62.76 REMARK 500 THR A 146 70.93 -155.05 REMARK 500 GLN A 147 -77.36 -143.92 REMARK 500 LEU A 170 -17.77 -45.31 REMARK 500 ASN A 171 4.05 -55.02 REMARK 500 HIS A 173 -162.46 61.78 REMARK 500 ILE A 174 144.36 -38.48 REMARK 500 GLU A 182 -93.20 -63.13 REMARK 500 ALA A 183 -125.68 42.44 REMARK 500 GLN A 184 60.35 162.05 REMARK 500 ASP A 209 -129.86 27.14 REMARK 500 PHE A 210 -90.28 -119.93 REMARK 500 ARG A 211 -142.01 52.50 REMARK 500 SER A 212 -10.67 156.20 REMARK 500 LEU A 214 -64.34 -15.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 42 PRO A 43 -141.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IWY RELATED DB: PDB DBREF 4IWX A 1 300 UNP P0C0U4 RIMK_ECOLI 1 300 SEQADV 4IWX MET A -19 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX GLY A -18 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX SER A -17 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX SER A -16 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX HIS A -15 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX HIS A -14 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX HIS A -13 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX HIS A -12 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX HIS A -11 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX HIS A -10 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX SER A -9 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX SER A -8 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX GLY A -7 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX LEU A -6 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX VAL A -5 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX PRO A -4 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX ARG A -3 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX GLY A -2 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX SER A -1 UNP P0C0U4 EXPRESSION TAG SEQADV 4IWX HIS A 0 UNP P0C0U4 EXPRESSION TAG SEQRES 1 A 320 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 320 LEU VAL PRO ARG GLY SER HIS MET LYS ILE ALA ILE LEU SEQRES 3 A 320 SER ARG ASP GLY THR LEU TYR SER CYS LYS ARG LEU ARG SEQRES 4 A 320 GLU ALA ALA ILE GLN ARG GLY HIS LEU VAL GLU ILE LEU SEQRES 5 A 320 ASP PRO LEU SER CYS TYR MET ASN ILE ASN PRO ALA ALA SEQRES 6 A 320 SER SER ILE HIS TYR LYS GLY ARG LYS LEU PRO HIS PHE SEQRES 7 A 320 ASP ALA VAL ILE PRO ARG ILE GLY THR ALA ILE THR PHE SEQRES 8 A 320 TYR GLY THR ALA ALA LEU ARG GLN PHE GLU MET LEU GLY SEQRES 9 A 320 SER TYR PRO LEU ASN GLU SER VAL ALA ILE ALA ARG ALA SEQRES 10 A 320 ARG ASP LYS LEU ARG SER MET GLN LEU LEU ALA ARG GLN SEQRES 11 A 320 GLY ILE ASP LEU PRO VAL THR GLY ILE ALA HIS SER PRO SEQRES 12 A 320 ASP ASP THR SER ASP LEU ILE ASP MET VAL GLY GLY ALA SEQRES 13 A 320 PRO LEU VAL VAL LYS LEU VAL GLU GLY THR GLN GLY ILE SEQRES 14 A 320 GLY VAL VAL LEU ALA GLU THR ARG GLN ALA ALA GLU SER SEQRES 15 A 320 VAL ILE ASP ALA PHE ARG GLY LEU ASN ALA HIS ILE LEU SEQRES 16 A 320 VAL GLN GLU TYR ILE LYS GLU ALA GLN GLY CYS ASP ILE SEQRES 17 A 320 ARG CYS LEU VAL VAL GLY ASP GLU VAL VAL ALA ALA ILE SEQRES 18 A 320 GLU ARG ARG ALA LYS GLU GLY ASP PHE ARG SER ASN LEU SEQRES 19 A 320 HIS ARG GLY GLY ALA ALA SER VAL ALA SER ILE THR PRO SEQRES 20 A 320 GLN GLU ARG GLU ILE ALA ILE LYS ALA ALA ARG THR MET SEQRES 21 A 320 ALA LEU ASP VAL ALA GLY VAL ASP ILE LEU ARG ALA ASN SEQRES 22 A 320 ARG GLY PRO LEU VAL MET GLU VAL ASN ALA SER PRO GLY SEQRES 23 A 320 LEU GLU GLY ILE GLU LYS THR THR GLY ILE ASP ILE ALA SEQRES 24 A 320 GLY LYS MET ILE ARG TRP ILE GLU ARG HIS ALA THR THR SEQRES 25 A 320 GLU TYR CYS LEU LYS THR GLY GLY HET ADP A 401 27 HET GLU A 402 10 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GLU GLUTAMIC ACID HETNAM SO4 SULFATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 GLU C5 H9 N O4 FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *(H2 O) HELIX 1 1 THR A 11 GLN A 24 1 14 HELIX 2 2 ARG A 25 HIS A 27 5 3 HELIX 3 3 ASP A 33 LEU A 35 5 3 HELIX 4 4 ILE A 69 LEU A 83 1 15 HELIX 5 5 GLU A 90 ASP A 99 1 10 HELIX 6 6 ASP A 99 GLN A 110 1 12 HELIX 7 7 ASP A 125 MET A 132 1 8 HELIX 8 8 THR A 156 GLY A 169 1 14 HELIX 9 9 LEU A 170 HIS A 173 5 4 HELIX 10 10 THR A 226 MET A 240 1 15 HELIX 11 11 LEU A 267 GLY A 275 1 9 HELIX 12 12 ASP A 277 ALA A 290 1 14 SHEET 1 A 4 LEU A 28 LEU A 32 0 SHEET 2 A 4 LYS A 2 LEU A 6 1 N ILE A 3 O LEU A 28 SHEET 3 A 4 ALA A 60 PRO A 63 1 O ILE A 62 N ALA A 4 SHEET 4 A 4 TYR A 86 PRO A 87 1 O TYR A 86 N VAL A 61 SHEET 1 B 3 CYS A 37 MET A 39 0 SHEET 2 B 3 ILE A 48 TYR A 50 -1 O HIS A 49 N TYR A 38 SHEET 3 B 3 ARG A 53 LYS A 54 -1 O ARG A 53 N TYR A 50 SHEET 1 C 4 THR A 117 ALA A 120 0 SHEET 2 C 4 LEU A 175 TYR A 179 -1 O GLN A 177 N GLY A 118 SHEET 3 C 4 LEU A 138 LEU A 142 -1 N VAL A 139 O GLU A 178 SHEET 4 C 4 GLY A 150 ALA A 154 -1 O ALA A 154 N LEU A 138 SHEET 1 D 5 ALA A 219 VAL A 222 0 SHEET 2 D 5 GLU A 196 ARG A 204 -1 N GLU A 202 O SER A 221 SHEET 3 D 5 ASP A 187 VAL A 193 -1 N ARG A 189 O ILE A 201 SHEET 4 D 5 VAL A 244 ALA A 252 -1 O ILE A 249 N ILE A 188 SHEET 5 D 5 GLY A 255 ASN A 262 -1 O MET A 259 N ASP A 248 SITE 1 AC1 12 LYS A 141 GLU A 178 TYR A 179 ILE A 180 SITE 2 AC1 12 LYS A 181 ASP A 187 ARG A 211 SER A 212 SITE 3 AC1 12 ASN A 213 ASP A 248 MET A 259 GLU A 260 SITE 1 AC2 8 ARG A 78 MET A 82 VAL A 92 ARG A 96 SITE 2 AC2 8 ARG A 102 GLN A 105 LEU A 106 ARG A 109 SITE 1 AC3 5 ARG A 189 LEU A 214 ASN A 262 PRO A 265 SITE 2 AC3 5 GLY A 266 SITE 1 AC4 6 THR A 67 ARG A 98 LYS A 100 ASN A 262 SITE 2 AC4 6 ALA A 263 SER A 264 SITE 1 AC5 2 LYS A 51 ARG A 53 SITE 1 AC6 3 SER A 46 SER A 47 LYS A 54 SITE 1 AC7 2 ARG A 284 ARG A 288 CRYST1 129.802 129.802 171.239 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007704 0.004448 0.000000 0.00000 SCALE2 0.000000 0.008896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005840 0.00000