data_4IX7 # _entry.id 4IX7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4IX7 NDB NA2227 RCSB RCSB077322 WWPDB D_1000077322 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4IX7 _pdbx_database_status.recvd_initial_deposition_date 2013-01-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, A.' 1 'Serganov, A.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors.' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 27 _citation.page_first 602 _citation.page_last 614 _citation.year 2013 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23468431 _citation.pdbx_database_id_DOI 10.1101/gad.213314.113 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Dai, Q.' 1 primary 'Ren, A.' 2 primary 'Westholm, J.O.' 3 primary 'Serganov, A.A.' 4 primary 'Patel, D.J.' 5 primary 'Lai, E.C.' 6 # _cell.entry_id 4IX7 _cell.length_a 43.382 _cell.length_b 75.464 _cell.length_c 89.809 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IX7 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*TP*TP*CP*CP*AP*AP*TP*TP*GP*GP*AP*A)-3'" 3990.622 2 ? ? ? ? 2 polymer man RE55538p 13054.505 2 ? ? 'Insv-BEN domain (UNP residues 251-365)' ? 3 water nat water 18.015 280 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DC)(DC)(DA)(DA)(DT)(DT)(DG)(DG)(DA)(DA)' GTTCCAATTGGAA C,D ? 2 'polypeptide(L)' no yes ;DNV(MSE)VSIGPNNTCVPASVFENINWSVCSLATRKLLVTIFDRETLATHSVTGKPSPAFKDQDKPLKR(MSE)LDPGK IQDIIFAVTHKCNASEKEVRNAITTKCADENK(MSE)(MSE)KIQNVKRRS ; ;DNVMVSIGPNNTCVPASVFENINWSVCSLATRKLLVTIFDRETLATHSVTGKPSPAFKDQDKPLKRMLDPGKIQDIIFAV THKCNASEKEVRNAITTKCADENKMMKIQNVKRRS ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DT n 1 4 DC n 1 5 DC n 1 6 DA n 1 7 DA n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DA n 1 13 DA n 2 1 ASP n 2 2 ASN n 2 3 VAL n 2 4 MSE n 2 5 VAL n 2 6 SER n 2 7 ILE n 2 8 GLY n 2 9 PRO n 2 10 ASN n 2 11 ASN n 2 12 THR n 2 13 CYS n 2 14 VAL n 2 15 PRO n 2 16 ALA n 2 17 SER n 2 18 VAL n 2 19 PHE n 2 20 GLU n 2 21 ASN n 2 22 ILE n 2 23 ASN n 2 24 TRP n 2 25 SER n 2 26 VAL n 2 27 CYS n 2 28 SER n 2 29 LEU n 2 30 ALA n 2 31 THR n 2 32 ARG n 2 33 LYS n 2 34 LEU n 2 35 LEU n 2 36 VAL n 2 37 THR n 2 38 ILE n 2 39 PHE n 2 40 ASP n 2 41 ARG n 2 42 GLU n 2 43 THR n 2 44 LEU n 2 45 ALA n 2 46 THR n 2 47 HIS n 2 48 SER n 2 49 VAL n 2 50 THR n 2 51 GLY n 2 52 LYS n 2 53 PRO n 2 54 SER n 2 55 PRO n 2 56 ALA n 2 57 PHE n 2 58 LYS n 2 59 ASP n 2 60 GLN n 2 61 ASP n 2 62 LYS n 2 63 PRO n 2 64 LEU n 2 65 LYS n 2 66 ARG n 2 67 MSE n 2 68 LEU n 2 69 ASP n 2 70 PRO n 2 71 GLY n 2 72 LYS n 2 73 ILE n 2 74 GLN n 2 75 ASP n 2 76 ILE n 2 77 ILE n 2 78 PHE n 2 79 ALA n 2 80 VAL n 2 81 THR n 2 82 HIS n 2 83 LYS n 2 84 CYS n 2 85 ASN n 2 86 ALA n 2 87 SER n 2 88 GLU n 2 89 LYS n 2 90 GLU n 2 91 VAL n 2 92 ARG n 2 93 ASN n 2 94 ALA n 2 95 ILE n 2 96 THR n 2 97 THR n 2 98 LYS n 2 99 CYS n 2 100 ALA n 2 101 ASP n 2 102 GLU n 2 103 ASN n 2 104 LYS n 2 105 MSE n 2 106 MSE n 2 107 LYS n 2 108 ILE n 2 109 GLN n 2 110 ASN n 2 111 VAL n 2 112 LYS n 2 113 ARG n 2 114 ARG n 2 115 SER n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CG3227, insensitive, insv' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q8SYK5_DROME Q8SYK5 2 ;DNVMVSIGPNNTCVPASVFENINWSVCSLATRKLLVTIFDRETLATHSVTGKPSPAFKDQDKPLKRMLDPGKIQDIIFAV THKCNASEKEVRNAITTKCADENKMMKIQNVKRRS ; 251 ? 2 PDB 4IX7 4IX7 1 GTTCCAATTGGAA 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4IX7 A 1 ? 115 ? Q8SYK5 251 ? 365 ? 251 365 2 1 4IX7 B 1 ? 115 ? Q8SYK5 251 ? 365 ? 251 365 3 2 4IX7 C 1 ? 13 ? 4IX7 1 ? 13 ? 1 13 4 2 4IX7 D 1 ? 13 ? 4IX7 1 ? 13 ? 1 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4IX7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_percent_sol 42.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1 M MES, pH 6.5, 26% PEG400, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-10-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock double crystal sagittal focusing' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9789 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength 0.9789 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4IX7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.58 _reflns.number_obs 41021 _reflns.number_all 41090 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value 0.084 _reflns.pdbx_netI_over_sigmaI 59.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 14.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.61 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.712 _reflns_shell.pdbx_Rsym_value 0.712 _reflns_shell.meanI_over_sigI_obs 4.0 _reflns_shell.pdbx_redundancy 14.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4IX7 _refine.ls_number_reflns_obs 41021 _refine.ls_number_reflns_all 41090 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.063 _refine.ls_d_res_high 1.581 _refine.ls_percent_reflns_obs 99.84 _refine.ls_R_factor_obs 0.1908 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1894 _refine.ls_R_factor_R_free 0.2164 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.02 _refine.ls_number_reflns_R_free 2061 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -3.0978 _refine.aniso_B[2][2] 4.2616 _refine.aniso_B[3][3] -1.1638 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.374 _refine.solvent_model_param_bsol 38.434 _refine.pdbx_solvent_vdw_probe_radii 0.90 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.60 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.31 _refine.pdbx_overall_phase_error 20.68 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1769 _refine_hist.pdbx_number_atoms_nucleic_acid 530 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 280 _refine_hist.number_atoms_total 2579 _refine_hist.d_res_high 1.581 _refine_hist.d_res_low 39.063 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 2441 ? 'X-RAY DIFFRACTION' f_angle_d 1.127 ? ? 3420 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 18.269 ? ? 981 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.059 ? ? 399 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 349 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.581 1.6180 2524 0.2206 100.0 0.2589 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.6180 1.6585 2543 0.2057 100.0 0.2737 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.6585 1.7033 2590 0.1931 100.0 0.2042 . . 115 . . . . 'X-RAY DIFFRACTION' . 1.7033 1.7535 2567 0.1890 100.0 0.2148 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.7535 1.8100 2579 0.1913 100.0 0.2192 . . 146 . . . . 'X-RAY DIFFRACTION' . 1.8100 1.8747 2561 0.1936 100.0 0.2418 . . 115 . . . . 'X-RAY DIFFRACTION' . 1.8747 1.9498 2581 0.1996 100.0 0.2400 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.9498 2.0385 2583 0.2098 100.0 0.2506 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.0385 2.1460 2583 0.1963 100.0 0.2168 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.1460 2.2804 2612 0.1878 100.0 0.2323 . . 122 . . . . 'X-RAY DIFFRACTION' . 2.2804 2.4565 2577 0.2024 100.0 0.2297 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.4565 2.7036 2650 0.2105 100.0 0.2353 . . 126 . . . . 'X-RAY DIFFRACTION' . 2.7036 3.0947 2600 0.2051 100.0 0.2265 . . 162 . . . . 'X-RAY DIFFRACTION' . 3.0947 3.8985 2665 0.1733 100.0 0.1981 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.8985 39.0752 2745 0.1686 98.0 0.1827 . . 137 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4IX7 _struct.title 'Crystal Structure of the insv-BEN domain complexed to its DNA target site' _struct.pdbx_descriptor 'RE55538p/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IX7 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'BEN domain, transcriptional repressor, DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA C 16 ? GLU C 20 ? ALA A 266 GLU A 270 1 ? 5 HELX_P HELX_P2 2 VAL C 26 ? PHE C 39 ? VAL A 276 PHE A 289 1 ? 14 HELX_P HELX_P3 3 ASP C 40 ? THR C 46 ? ASP A 290 THR A 296 1 ? 7 HELX_P HELX_P4 4 SER C 54 ? LYS C 58 ? SER A 304 LYS A 308 5 ? 5 HELX_P HELX_P5 5 ASP C 69 ? ASN C 85 ? ASP A 319 ASN A 335 1 ? 17 HELX_P HELX_P6 6 SER C 87 ? ARG C 113 ? SER A 337 ARG A 363 1 ? 27 HELX_P HELX_P7 7 ALA D 16 ? ILE D 22 ? ALA B 266 ILE B 272 1 ? 7 HELX_P HELX_P8 8 VAL D 26 ? PHE D 39 ? VAL B 276 PHE B 289 1 ? 14 HELX_P HELX_P9 9 ASP D 40 ? THR D 46 ? ASP B 290 THR B 296 1 ? 7 HELX_P HELX_P10 10 SER D 54 ? LYS D 58 ? SER B 304 LYS B 308 5 ? 5 HELX_P HELX_P11 11 ASP D 69 ? ASN D 85 ? ASP B 319 ASN B 335 1 ? 17 HELX_P HELX_P12 12 SER D 87 ? ARG D 114 ? SER B 337 ARG B 364 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? C VAL 3 C ? ? ? 1_555 C MSE 4 N ? ? A VAL 253 A MSE 254 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? C MSE 4 C ? ? ? 1_555 C VAL 5 N ? ? A MSE 254 A VAL 255 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? C ARG 66 C ? ? ? 1_555 C MSE 67 N ? ? A ARG 316 A MSE 317 1_555 ? ? ? ? ? ? ? 1.323 ? covale4 covale ? ? C MSE 67 C ? ? ? 1_555 C LEU 68 N ? ? A MSE 317 A LEU 318 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale ? ? C LYS 104 C ? ? ? 1_555 C MSE 105 N ? ? A LYS 354 A MSE 355 1_555 ? ? ? ? ? ? ? 1.320 ? covale6 covale ? ? C MSE 105 C ? ? ? 1_555 C MSE 106 N ? ? A MSE 355 A MSE 356 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale ? ? C MSE 106 C ? ? ? 1_555 C LYS 107 N ? ? A MSE 356 A LYS 357 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? D VAL 3 C ? ? ? 1_555 D MSE 4 N ? ? B VAL 253 B MSE 254 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale ? ? D MSE 4 C ? ? ? 1_555 D VAL 5 N ? ? B MSE 254 B VAL 255 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? D ARG 66 C ? ? ? 1_555 D MSE 67 N ? ? B ARG 316 B MSE 317 1_555 ? ? ? ? ? ? ? 1.323 ? covale11 covale ? ? D MSE 67 C ? ? ? 1_555 D LEU 68 N ? ? B MSE 317 B LEU 318 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale ? ? D LYS 104 C ? ? ? 1_555 D MSE 105 N ? ? B LYS 354 B MSE 355 1_555 ? ? ? ? ? ? ? 1.327 ? covale13 covale ? ? D MSE 105 C ? ? ? 1_555 D MSE 106 N ? ? B MSE 355 B MSE 356 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale ? ? D MSE 106 C ? ? ? 1_555 D LYS 107 N ? ? B MSE 356 B LYS 357 1_555 ? ? ? ? ? ? ? 1.328 ? hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 13 N1 ? ? C DT 2 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 13 N6 ? ? C DT 2 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 3 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 3 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 11 N1 ? ? C DC 4 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 11 O6 ? ? C DC 4 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 11 N2 ? ? C DC 4 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 10 N1 ? ? C DC 5 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 10 O6 ? ? C DC 5 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 10 N2 ? ? C DC 5 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 9 N3 ? ? C DA 6 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 9 O4 ? ? C DA 6 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 8 N3 ? ? C DA 7 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 8 O4 ? ? C DA 7 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 7 N1 ? ? C DT 8 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 7 N6 ? ? C DT 8 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 6 N1 ? ? C DT 9 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 6 N6 ? ? C DT 9 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 5 N3 ? ? C DG 10 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 5 O2 ? ? C DG 10 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 5 N4 ? ? C DG 10 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? C DG 11 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? C DG 11 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? C DG 11 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 3 N3 ? ? C DA 12 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 3 O4 ? ? C DA 12 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 2 N3 ? ? C DA 13 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 2 O4 ? ? C DA 13 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel C 1 2 ? anti-parallel D 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE C 4 ? SER C 6 ? MSE A 254 SER A 256 A 2 CYS C 13 ? PRO C 15 ? CYS A 263 PRO A 265 B 1 HIS C 47 ? SER C 48 ? HIS A 297 SER A 298 B 2 ARG C 66 ? MSE C 67 ? ARG A 316 MSE A 317 C 1 MSE D 4 ? SER D 6 ? MSE B 254 SER B 256 C 2 CYS D 13 ? PRO D 15 ? CYS B 263 PRO B 265 D 1 HIS D 47 ? SER D 48 ? HIS B 297 SER B 298 D 2 ARG D 66 ? MSE D 67 ? ARG B 316 MSE B 317 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL C 5 ? N VAL A 255 O VAL C 14 ? O VAL A 264 B 1 2 N SER C 48 ? N SER A 298 O ARG C 66 ? O ARG A 316 C 1 2 N VAL D 5 ? N VAL B 255 O VAL D 14 ? O VAL B 264 D 1 2 N SER D 48 ? N SER B 298 O ARG D 66 ? O ARG B 316 # _database_PDB_matrix.entry_id 4IX7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4IX7 _atom_sites.fract_transf_matrix[1][1] 0.023051 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013251 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011135 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG C . n A 1 2 DT 2 2 2 DT DT C . n A 1 3 DT 3 3 3 DT DT C . n A 1 4 DC 4 4 4 DC DC C . n A 1 5 DC 5 5 5 DC DC C . n A 1 6 DA 6 6 6 DA DA C . n A 1 7 DA 7 7 7 DA DA C . n A 1 8 DT 8 8 8 DT DT C . n A 1 9 DT 9 9 9 DT DT C . n A 1 10 DG 10 10 10 DG DG C . n A 1 11 DG 11 11 11 DG DG C . n A 1 12 DA 12 12 12 DA DA C . n A 1 13 DA 13 13 13 DA DA C . n B 1 1 DG 1 1 1 DG DG D . n B 1 2 DT 2 2 2 DT DT D . n B 1 3 DT 3 3 3 DT DT D . n B 1 4 DC 4 4 4 DC DC D . n B 1 5 DC 5 5 5 DC DC D . n B 1 6 DA 6 6 6 DA DA D . n B 1 7 DA 7 7 7 DA DA D . n B 1 8 DT 8 8 8 DT DT D . n B 1 9 DT 9 9 9 DT DT D . n B 1 10 DG 10 10 10 DG DG D . n B 1 11 DG 11 11 11 DG DG D . n B 1 12 DA 12 12 12 DA DA D . n B 1 13 DA 13 13 13 DA DA D . n C 2 1 ASP 1 251 251 ASP ASP A . n C 2 2 ASN 2 252 252 ASN ASN A . n C 2 3 VAL 3 253 253 VAL VAL A . n C 2 4 MSE 4 254 254 MSE MSE A . n C 2 5 VAL 5 255 255 VAL VAL A . n C 2 6 SER 6 256 256 SER SER A . n C 2 7 ILE 7 257 257 ILE ILE A . n C 2 8 GLY 8 258 258 GLY GLY A . n C 2 9 PRO 9 259 259 PRO PRO A . n C 2 10 ASN 10 260 260 ASN ASN A . n C 2 11 ASN 11 261 261 ASN ASN A . n C 2 12 THR 12 262 262 THR THR A . n C 2 13 CYS 13 263 263 CYS CYS A . n C 2 14 VAL 14 264 264 VAL VAL A . n C 2 15 PRO 15 265 265 PRO PRO A . n C 2 16 ALA 16 266 266 ALA ALA A . n C 2 17 SER 17 267 267 SER SER A . n C 2 18 VAL 18 268 268 VAL VAL A . n C 2 19 PHE 19 269 269 PHE PHE A . n C 2 20 GLU 20 270 270 GLU GLU A . n C 2 21 ASN 21 271 271 ASN ASN A . n C 2 22 ILE 22 272 272 ILE ILE A . n C 2 23 ASN 23 273 273 ASN ASN A . n C 2 24 TRP 24 274 274 TRP TRP A . n C 2 25 SER 25 275 275 SER SER A . n C 2 26 VAL 26 276 276 VAL VAL A . n C 2 27 CYS 27 277 277 CYS CYS A . n C 2 28 SER 28 278 278 SER SER A . n C 2 29 LEU 29 279 279 LEU LEU A . n C 2 30 ALA 30 280 280 ALA ALA A . n C 2 31 THR 31 281 281 THR THR A . n C 2 32 ARG 32 282 282 ARG ARG A . n C 2 33 LYS 33 283 283 LYS LYS A . n C 2 34 LEU 34 284 284 LEU LEU A . n C 2 35 LEU 35 285 285 LEU LEU A . n C 2 36 VAL 36 286 286 VAL VAL A . n C 2 37 THR 37 287 287 THR THR A . n C 2 38 ILE 38 288 288 ILE ILE A . n C 2 39 PHE 39 289 289 PHE PHE A . n C 2 40 ASP 40 290 290 ASP ASP A . n C 2 41 ARG 41 291 291 ARG ARG A . n C 2 42 GLU 42 292 292 GLU GLU A . n C 2 43 THR 43 293 293 THR THR A . n C 2 44 LEU 44 294 294 LEU LEU A . n C 2 45 ALA 45 295 295 ALA ALA A . n C 2 46 THR 46 296 296 THR THR A . n C 2 47 HIS 47 297 297 HIS HIS A . n C 2 48 SER 48 298 298 SER SER A . n C 2 49 VAL 49 299 299 VAL VAL A . n C 2 50 THR 50 300 300 THR THR A . n C 2 51 GLY 51 301 301 GLY GLY A . n C 2 52 LYS 52 302 302 LYS LYS A . n C 2 53 PRO 53 303 303 PRO PRO A . n C 2 54 SER 54 304 304 SER SER A . n C 2 55 PRO 55 305 305 PRO PRO A . n C 2 56 ALA 56 306 306 ALA ALA A . n C 2 57 PHE 57 307 307 PHE PHE A . n C 2 58 LYS 58 308 308 LYS LYS A . n C 2 59 ASP 59 309 309 ASP ASP A . n C 2 60 GLN 60 310 310 GLN GLN A . n C 2 61 ASP 61 311 311 ASP ALA A . n C 2 62 LYS 62 312 312 LYS LYS A . n C 2 63 PRO 63 313 313 PRO PRO A . n C 2 64 LEU 64 314 314 LEU LEU A . n C 2 65 LYS 65 315 315 LYS LYS A . n C 2 66 ARG 66 316 316 ARG ARG A . n C 2 67 MSE 67 317 317 MSE MSE A . n C 2 68 LEU 68 318 318 LEU LEU A . n C 2 69 ASP 69 319 319 ASP ASP A . n C 2 70 PRO 70 320 320 PRO PRO A . n C 2 71 GLY 71 321 321 GLY GLY A . n C 2 72 LYS 72 322 322 LYS LYS A . n C 2 73 ILE 73 323 323 ILE ILE A . n C 2 74 GLN 74 324 324 GLN GLN A . n C 2 75 ASP 75 325 325 ASP ASP A . n C 2 76 ILE 76 326 326 ILE ILE A . n C 2 77 ILE 77 327 327 ILE ILE A . n C 2 78 PHE 78 328 328 PHE PHE A . n C 2 79 ALA 79 329 329 ALA ALA A . n C 2 80 VAL 80 330 330 VAL VAL A . n C 2 81 THR 81 331 331 THR THR A . n C 2 82 HIS 82 332 332 HIS HIS A . n C 2 83 LYS 83 333 333 LYS LYS A . n C 2 84 CYS 84 334 334 CYS CYS A . n C 2 85 ASN 85 335 335 ASN ASN A . n C 2 86 ALA 86 336 336 ALA ALA A . n C 2 87 SER 87 337 337 SER SER A . n C 2 88 GLU 88 338 338 GLU GLU A . n C 2 89 LYS 89 339 339 LYS LYS A . n C 2 90 GLU 90 340 340 GLU GLU A . n C 2 91 VAL 91 341 341 VAL VAL A . n C 2 92 ARG 92 342 342 ARG ARG A . n C 2 93 ASN 93 343 343 ASN ASN A . n C 2 94 ALA 94 344 344 ALA ALA A . n C 2 95 ILE 95 345 345 ILE ILE A . n C 2 96 THR 96 346 346 THR THR A . n C 2 97 THR 97 347 347 THR THR A . n C 2 98 LYS 98 348 348 LYS LYS A . n C 2 99 CYS 99 349 349 CYS CYS A . n C 2 100 ALA 100 350 350 ALA ALA A . n C 2 101 ASP 101 351 351 ASP ASP A . n C 2 102 GLU 102 352 352 GLU GLU A . n C 2 103 ASN 103 353 353 ASN ASN A . n C 2 104 LYS 104 354 354 LYS LYS A . n C 2 105 MSE 105 355 355 MSE MSE A . n C 2 106 MSE 106 356 356 MSE MSE A . n C 2 107 LYS 107 357 357 LYS LYS A . n C 2 108 ILE 108 358 358 ILE ILE A . n C 2 109 GLN 109 359 359 GLN GLN A . n C 2 110 ASN 110 360 360 ASN ASN A . n C 2 111 VAL 111 361 361 VAL VAL A . n C 2 112 LYS 112 362 362 LYS LYS A . n C 2 113 ARG 113 363 363 ARG ARG A . n C 2 114 ARG 114 364 364 ARG ALA A . n C 2 115 SER 115 365 ? ? ? A . n D 2 1 ASP 1 251 251 ASP ASP B . n D 2 2 ASN 2 252 252 ASN ASN B . n D 2 3 VAL 3 253 253 VAL VAL B . n D 2 4 MSE 4 254 254 MSE MSE B . n D 2 5 VAL 5 255 255 VAL VAL B . n D 2 6 SER 6 256 256 SER SER B . n D 2 7 ILE 7 257 257 ILE ILE B . n D 2 8 GLY 8 258 258 GLY GLY B . n D 2 9 PRO 9 259 259 PRO PRO B . n D 2 10 ASN 10 260 260 ASN ASN B . n D 2 11 ASN 11 261 261 ASN ASN B . n D 2 12 THR 12 262 262 THR THR B . n D 2 13 CYS 13 263 263 CYS CYS B . n D 2 14 VAL 14 264 264 VAL VAL B . n D 2 15 PRO 15 265 265 PRO PRO B . n D 2 16 ALA 16 266 266 ALA ALA B . n D 2 17 SER 17 267 267 SER SER B . n D 2 18 VAL 18 268 268 VAL VAL B . n D 2 19 PHE 19 269 269 PHE PHE B . n D 2 20 GLU 20 270 270 GLU GLU B . n D 2 21 ASN 21 271 271 ASN ASN B . n D 2 22 ILE 22 272 272 ILE ILE B . n D 2 23 ASN 23 273 273 ASN ASN B . n D 2 24 TRP 24 274 274 TRP TRP B . n D 2 25 SER 25 275 275 SER SER B . n D 2 26 VAL 26 276 276 VAL VAL B . n D 2 27 CYS 27 277 277 CYS CYS B . n D 2 28 SER 28 278 278 SER SER B . n D 2 29 LEU 29 279 279 LEU LEU B . n D 2 30 ALA 30 280 280 ALA ALA B . n D 2 31 THR 31 281 281 THR THR B . n D 2 32 ARG 32 282 282 ARG ARG B . n D 2 33 LYS 33 283 283 LYS LYS B . n D 2 34 LEU 34 284 284 LEU LEU B . n D 2 35 LEU 35 285 285 LEU LEU B . n D 2 36 VAL 36 286 286 VAL VAL B . n D 2 37 THR 37 287 287 THR THR B . n D 2 38 ILE 38 288 288 ILE ILE B . n D 2 39 PHE 39 289 289 PHE PHE B . n D 2 40 ASP 40 290 290 ASP ASP B . n D 2 41 ARG 41 291 291 ARG ARG B . n D 2 42 GLU 42 292 292 GLU GLU B . n D 2 43 THR 43 293 293 THR THR B . n D 2 44 LEU 44 294 294 LEU LEU B . n D 2 45 ALA 45 295 295 ALA ALA B . n D 2 46 THR 46 296 296 THR THR B . n D 2 47 HIS 47 297 297 HIS HIS B . n D 2 48 SER 48 298 298 SER SER B . n D 2 49 VAL 49 299 299 VAL VAL B . n D 2 50 THR 50 300 300 THR THR B . n D 2 51 GLY 51 301 301 GLY GLY B . n D 2 52 LYS 52 302 302 LYS LYS B . n D 2 53 PRO 53 303 303 PRO PRO B . n D 2 54 SER 54 304 304 SER SER B . n D 2 55 PRO 55 305 305 PRO PRO B . n D 2 56 ALA 56 306 306 ALA ALA B . n D 2 57 PHE 57 307 307 PHE PHE B . n D 2 58 LYS 58 308 308 LYS LYS B . n D 2 59 ASP 59 309 309 ASP ASP B . n D 2 60 GLN 60 310 310 GLN GLN B . n D 2 61 ASP 61 311 311 ASP ASP B . n D 2 62 LYS 62 312 312 LYS LYS B . n D 2 63 PRO 63 313 313 PRO PRO B . n D 2 64 LEU 64 314 314 LEU LEU B . n D 2 65 LYS 65 315 315 LYS LYS B . n D 2 66 ARG 66 316 316 ARG ARG B . n D 2 67 MSE 67 317 317 MSE MSE B . n D 2 68 LEU 68 318 318 LEU LEU B . n D 2 69 ASP 69 319 319 ASP ASP B . n D 2 70 PRO 70 320 320 PRO PRO B . n D 2 71 GLY 71 321 321 GLY GLY B . n D 2 72 LYS 72 322 322 LYS LYS B . n D 2 73 ILE 73 323 323 ILE ILE B . n D 2 74 GLN 74 324 324 GLN GLN B . n D 2 75 ASP 75 325 325 ASP ASP B . n D 2 76 ILE 76 326 326 ILE ILE B . n D 2 77 ILE 77 327 327 ILE ILE B . n D 2 78 PHE 78 328 328 PHE PHE B . n D 2 79 ALA 79 329 329 ALA ALA B . n D 2 80 VAL 80 330 330 VAL VAL B . n D 2 81 THR 81 331 331 THR THR B . n D 2 82 HIS 82 332 332 HIS HIS B . n D 2 83 LYS 83 333 333 LYS LYS B . n D 2 84 CYS 84 334 334 CYS CYS B . n D 2 85 ASN 85 335 335 ASN ASN B . n D 2 86 ALA 86 336 336 ALA ALA B . n D 2 87 SER 87 337 337 SER SER B . n D 2 88 GLU 88 338 338 GLU GLU B . n D 2 89 LYS 89 339 339 LYS LYS B . n D 2 90 GLU 90 340 340 GLU GLU B . n D 2 91 VAL 91 341 341 VAL VAL B . n D 2 92 ARG 92 342 342 ARG ARG B . n D 2 93 ASN 93 343 343 ASN ASN B . n D 2 94 ALA 94 344 344 ALA ALA B . n D 2 95 ILE 95 345 345 ILE ILE B . n D 2 96 THR 96 346 346 THR THR B . n D 2 97 THR 97 347 347 THR THR B . n D 2 98 LYS 98 348 348 LYS LYS B . n D 2 99 CYS 99 349 349 CYS CYS B . n D 2 100 ALA 100 350 350 ALA ALA B . n D 2 101 ASP 101 351 351 ASP ASP B . n D 2 102 GLU 102 352 352 GLU GLU B . n D 2 103 ASN 103 353 353 ASN ASN B . n D 2 104 LYS 104 354 354 LYS LYS B . n D 2 105 MSE 105 355 355 MSE MSE B . n D 2 106 MSE 106 356 356 MSE MSE B . n D 2 107 LYS 107 357 357 LYS LYS B . n D 2 108 ILE 108 358 358 ILE ILE B . n D 2 109 GLN 109 359 359 GLN GLN B . n D 2 110 ASN 110 360 360 ASN ASN B . n D 2 111 VAL 111 361 361 VAL VAL B . n D 2 112 LYS 112 362 362 LYS LYS B . n D 2 113 ARG 113 363 363 ARG ARG B . n D 2 114 ARG 114 364 364 ARG ARG B . n D 2 115 SER 115 365 ? ? ? B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C MSE 4 A MSE 254 ? MET SELENOMETHIONINE 2 C MSE 67 A MSE 317 ? MET SELENOMETHIONINE 3 C MSE 105 A MSE 355 ? MET SELENOMETHIONINE 4 C MSE 106 A MSE 356 ? MET SELENOMETHIONINE 5 D MSE 4 B MSE 254 ? MET SELENOMETHIONINE 6 D MSE 67 B MSE 317 ? MET SELENOMETHIONINE 7 D MSE 105 B MSE 355 ? MET SELENOMETHIONINE 8 D MSE 106 B MSE 356 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6030 ? 1 MORE -34 ? 1 'SSA (A^2)' 15360 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-20 2 'Structure model' 1 1 2013-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SHELXS phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.2_869)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 476 ? ? O A HOH 477 ? ? 2.11 2 1 O A HOH 476 ? ? O A HOH 485 ? ? 2.12 3 1 O B HOH 489 ? ? O B HOH 491 ? ? 2.16 4 1 O C HOH 115 ? ? O C HOH 152 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 10 ? ? "C1'" C DG 10 ? ? N9 C DG 10 ? ? 103.53 108.00 -4.47 0.70 N 2 1 "C3'" C DG 11 ? ? "C2'" C DG 11 ? ? "C1'" C DG 11 ? ? 97.56 102.40 -4.84 0.80 N 3 1 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 110.79 108.30 2.49 0.30 N 4 1 "O4'" C DA 12 ? ? "C1'" C DA 12 ? ? N9 C DA 12 ? ? 101.90 108.00 -6.10 0.70 N 5 1 "O4'" D DG 1 ? ? "C4'" D DG 1 ? ? "C3'" D DG 1 ? ? 101.79 104.50 -2.71 0.40 N 6 1 "O5'" D DT 2 ? ? "C5'" D DT 2 ? ? "C4'" D DT 2 ? ? 104.57 109.40 -4.83 0.80 N 7 1 "O4'" D DG 10 ? ? "C1'" D DG 10 ? ? N9 D DG 10 ? ? 102.68 108.00 -5.32 0.70 N 8 1 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.11 108.30 2.81 0.30 N 9 1 "O4'" D DA 12 ? ? "C1'" D DA 12 ? ? N9 D DA 12 ? ? 103.75 108.00 -4.25 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 319 ? ? -39.03 111.38 2 1 ASP B 311 ? ? -111.18 54.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 311 ? CG ? C ASP 61 CG 2 1 Y 1 A ASP 311 ? OD1 ? C ASP 61 OD1 3 1 Y 1 A ASP 311 ? OD2 ? C ASP 61 OD2 4 1 Y 1 A ARG 364 ? CG ? C ARG 114 CG 5 1 Y 1 A ARG 364 ? CD ? C ARG 114 CD 6 1 Y 1 A ARG 364 ? NE ? C ARG 114 NE 7 1 Y 1 A ARG 364 ? CZ ? C ARG 114 CZ 8 1 Y 1 A ARG 364 ? NH1 ? C ARG 114 NH1 9 1 Y 1 A ARG 364 ? NH2 ? C ARG 114 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 365 ? C SER 115 2 1 Y 1 B SER 365 ? D SER 115 # _ndb_struct_conf_na.entry_id 4IX7 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 13 1_555 -0.174 -0.115 0.081 -19.264 -19.722 3.116 1 C_DT2:DA13_D C 2 ? D 13 ? 20 1 1 A DT 3 1_555 B DA 12 1_555 -0.058 -0.154 0.000 -15.372 -16.118 0.852 2 C_DT3:DA12_D C 3 ? D 12 ? 20 1 1 A DC 4 1_555 B DG 11 1_555 0.169 -0.080 0.053 -17.781 -1.533 1.069 3 C_DC4:DG11_D C 4 ? D 11 ? 19 1 1 A DC 5 1_555 B DG 10 1_555 0.292 -0.077 0.136 -17.795 2.436 0.108 4 C_DC5:DG10_D C 5 ? D 10 ? 19 1 1 A DA 6 1_555 B DT 9 1_555 0.148 -0.146 -0.352 -7.909 -5.748 2.180 5 C_DA6:DT9_D C 6 ? D 9 ? 20 1 1 A DA 7 1_555 B DT 8 1_555 0.173 -0.039 -0.148 -4.197 -5.895 -0.731 6 C_DA7:DT8_D C 7 ? D 8 ? 20 1 1 A DT 8 1_555 B DA 7 1_555 -0.072 -0.036 -0.185 4.411 -7.341 1.230 7 C_DT8:DA7_D C 8 ? D 7 ? 20 1 1 A DT 9 1_555 B DA 6 1_555 -0.172 -0.105 -0.329 7.996 -2.657 3.432 8 C_DT9:DA6_D C 9 ? D 6 ? 20 1 1 A DG 10 1_555 B DC 5 1_555 -0.263 -0.122 0.064 15.088 4.405 -1.409 9 C_DG10:DC5_D C 10 ? D 5 ? 19 1 1 A DG 11 1_555 B DC 4 1_555 -0.122 -0.088 -0.025 17.730 1.497 -1.434 10 C_DG11:DC4_D C 11 ? D 4 ? 19 1 1 A DA 12 1_555 B DT 3 1_555 0.044 -0.145 0.074 16.761 -12.933 0.041 11 C_DA12:DT3_D C 12 ? D 3 ? 20 1 1 A DA 13 1_555 B DT 2 1_555 0.092 -0.102 0.355 19.639 -15.578 1.143 12 C_DA13:DT2_D C 13 ? D 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 13 1_555 A DT 3 1_555 B DA 12 1_555 -0.474 -0.021 3.162 -1.197 5.484 33.310 -0.896 0.628 3.133 9.484 2.069 33.766 1 CC_DT2DT3:DA12DA13_DD C 2 ? D 13 ? C 3 ? D 12 ? 1 A DT 3 1_555 B DA 12 1_555 A DC 4 1_555 B DG 11 1_555 0.950 0.013 3.337 1.419 1.641 39.431 -0.179 -1.235 3.365 2.430 -2.102 39.488 2 CC_DT3DC4:DG11DA12_DD C 3 ? D 12 ? C 4 ? D 11 ? 1 A DC 4 1_555 B DG 11 1_555 A DC 5 1_555 B DG 10 1_555 -0.344 -0.583 3.445 1.411 0.988 27.173 -1.498 1.100 3.401 2.100 -2.999 27.227 3 CC_DC4DC5:DG10DG11_DD C 4 ? D 11 ? C 5 ? D 10 ? 1 A DC 5 1_555 B DG 10 1_555 A DA 6 1_555 B DT 9 1_555 0.208 1.241 3.621 2.202 19.826 29.505 -1.545 0.057 3.716 34.418 -3.822 35.491 4 CC_DC5DA6:DT9DG10_DD C 5 ? D 10 ? C 6 ? D 9 ? 1 A DA 6 1_555 B DT 9 1_555 A DA 7 1_555 B DT 8 1_555 -1.143 0.324 3.215 -6.416 6.788 36.248 -0.408 0.918 3.366 10.694 10.107 37.393 5 CC_DA6DA7:DT8DT9_DD C 6 ? D 9 ? C 7 ? D 8 ? 1 A DA 7 1_555 B DT 8 1_555 A DT 8 1_555 B DA 7 1_555 0.206 -0.508 3.183 0.992 4.341 27.286 -2.078 -0.199 3.072 9.124 -2.086 27.640 6 CC_DA7DT8:DA7DT8_DD C 7 ? D 8 ? C 8 ? D 7 ? 1 A DT 8 1_555 B DA 7 1_555 A DT 9 1_555 B DA 6 1_555 0.998 0.336 3.282 4.608 7.731 34.809 -0.599 -0.937 3.378 12.662 -7.548 35.918 7 CC_DT8DT9:DA6DA7_DD C 8 ? D 7 ? C 9 ? D 6 ? 1 A DT 9 1_555 B DA 6 1_555 A DG 10 1_555 B DC 5 1_555 -0.437 1.279 3.769 -3.025 22.229 30.698 -1.730 0.169 3.842 36.504 4.967 37.862 8 CC_DT9DG10:DC5DA6_DD C 9 ? D 6 ? C 10 ? D 5 ? 1 A DG 10 1_555 B DC 5 1_555 A DG 11 1_555 B DC 4 1_555 0.327 -0.509 3.459 -1.119 1.552 26.115 -1.565 -1.040 3.406 3.430 2.472 26.184 9 CC_DG10DG11:DC4DC5_DD C 10 ? D 5 ? C 11 ? D 4 ? 1 A DG 11 1_555 B DC 4 1_555 A DA 12 1_555 B DT 3 1_555 -1.109 0.079 3.351 -2.516 2.607 38.562 -0.212 1.354 3.412 3.937 3.799 38.725 10 CC_DG11DA12:DT3DC4_DD C 11 ? D 4 ? C 12 ? D 3 ? 1 A DA 12 1_555 B DT 3 1_555 A DA 13 1_555 B DT 2 1_555 0.198 -0.049 3.184 -0.642 4.765 34.708 -0.778 -0.422 3.146 7.940 1.069 35.030 11 CC_DA12DA13:DT2DT3_DD C 12 ? D 3 ? C 13 ? D 2 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 101 1 HOH HOH C . E 3 HOH 2 102 11 HOH HOH C . E 3 HOH 3 103 15 HOH HOH C . E 3 HOH 4 104 20 HOH HOH C . E 3 HOH 5 105 24 HOH HOH C . E 3 HOH 6 106 26 HOH HOH C . E 3 HOH 7 107 28 HOH HOH C . E 3 HOH 8 108 29 HOH HOH C . E 3 HOH 9 109 38 HOH HOH C . E 3 HOH 10 110 40 HOH HOH C . E 3 HOH 11 111 42 HOH HOH C . E 3 HOH 12 112 46 HOH HOH C . E 3 HOH 13 113 47 HOH HOH C . E 3 HOH 14 114 50 HOH HOH C . E 3 HOH 15 115 61 HOH HOH C . E 3 HOH 16 116 72 HOH HOH C . E 3 HOH 17 117 74 HOH HOH C . E 3 HOH 18 118 78 HOH HOH C . E 3 HOH 19 119 79 HOH HOH C . E 3 HOH 20 120 80 HOH HOH C . E 3 HOH 21 121 91 HOH HOH C . E 3 HOH 22 122 97 HOH HOH C . E 3 HOH 23 123 105 HOH HOH C . E 3 HOH 24 124 106 HOH HOH C . E 3 HOH 25 125 108 HOH HOH C . E 3 HOH 26 126 109 HOH HOH C . E 3 HOH 27 127 111 HOH HOH C . E 3 HOH 28 128 120 HOH HOH C . E 3 HOH 29 129 127 HOH HOH C . E 3 HOH 30 130 148 HOH HOH C . E 3 HOH 31 131 154 HOH HOH C . E 3 HOH 32 132 156 HOH HOH C . E 3 HOH 33 133 160 HOH HOH C . E 3 HOH 34 134 179 HOH HOH C . E 3 HOH 35 135 187 HOH HOH C . E 3 HOH 36 136 191 HOH HOH C . E 3 HOH 37 137 194 HOH HOH C . E 3 HOH 38 138 199 HOH HOH C . E 3 HOH 39 139 205 HOH HOH C . E 3 HOH 40 140 206 HOH HOH C . E 3 HOH 41 141 213 HOH HOH C . E 3 HOH 42 142 214 HOH HOH C . E 3 HOH 43 143 215 HOH HOH C . E 3 HOH 44 144 216 HOH HOH C . E 3 HOH 45 145 218 HOH HOH C . E 3 HOH 46 146 223 HOH HOH C . E 3 HOH 47 147 226 HOH HOH C . E 3 HOH 48 148 227 HOH HOH C . E 3 HOH 49 149 228 HOH HOH C . E 3 HOH 50 150 242 HOH HOH C . E 3 HOH 51 151 249 HOH HOH C . E 3 HOH 52 152 265 HOH HOH C . E 3 HOH 53 153 280 HOH HOH C . F 3 HOH 1 101 43 HOH HOH D . F 3 HOH 2 102 2 HOH HOH D . F 3 HOH 3 103 7 HOH HOH D . F 3 HOH 4 104 9 HOH HOH D . F 3 HOH 5 105 17 HOH HOH D . F 3 HOH 6 106 22 HOH HOH D . F 3 HOH 7 107 30 HOH HOH D . F 3 HOH 8 108 35 HOH HOH D . F 3 HOH 9 109 41 HOH HOH D . F 3 HOH 10 110 44 HOH HOH D . F 3 HOH 11 111 63 HOH HOH D . F 3 HOH 12 112 67 HOH HOH D . F 3 HOH 13 113 69 HOH HOH D . F 3 HOH 14 114 77 HOH HOH D . F 3 HOH 15 115 84 HOH HOH D . F 3 HOH 16 116 87 HOH HOH D . F 3 HOH 17 117 88 HOH HOH D . F 3 HOH 18 118 95 HOH HOH D . F 3 HOH 19 119 100 HOH HOH D . F 3 HOH 20 120 107 HOH HOH D . F 3 HOH 21 121 114 HOH HOH D . F 3 HOH 22 122 116 HOH HOH D . F 3 HOH 23 123 125 HOH HOH D . F 3 HOH 24 124 126 HOH HOH D . F 3 HOH 25 125 140 HOH HOH D . F 3 HOH 26 126 144 HOH HOH D . F 3 HOH 27 127 147 HOH HOH D . F 3 HOH 28 128 157 HOH HOH D . F 3 HOH 29 129 163 HOH HOH D . F 3 HOH 30 130 166 HOH HOH D . F 3 HOH 31 131 172 HOH HOH D . F 3 HOH 32 132 178 HOH HOH D . F 3 HOH 33 133 182 HOH HOH D . F 3 HOH 34 134 188 HOH HOH D . F 3 HOH 35 135 192 HOH HOH D . F 3 HOH 36 136 202 HOH HOH D . F 3 HOH 37 137 217 HOH HOH D . F 3 HOH 38 138 221 HOH HOH D . F 3 HOH 39 139 222 HOH HOH D . F 3 HOH 40 140 239 HOH HOH D . F 3 HOH 41 141 243 HOH HOH D . F 3 HOH 42 142 250 HOH HOH D . F 3 HOH 43 143 252 HOH HOH D . F 3 HOH 44 144 253 HOH HOH D . F 3 HOH 45 145 258 HOH HOH D . F 3 HOH 46 146 260 HOH HOH D . F 3 HOH 47 147 263 HOH HOH D . F 3 HOH 48 148 270 HOH HOH D . F 3 HOH 49 149 277 HOH HOH D . F 3 HOH 50 150 152 HOH HOH D . G 3 HOH 1 401 3 HOH HOH A . G 3 HOH 2 402 4 HOH HOH A . G 3 HOH 3 403 5 HOH HOH A . G 3 HOH 4 404 8 HOH HOH A . G 3 HOH 5 405 21 HOH HOH A . G 3 HOH 6 406 23 HOH HOH A . G 3 HOH 7 407 25 HOH HOH A . G 3 HOH 8 408 27 HOH HOH A . G 3 HOH 9 409 31 HOH HOH A . G 3 HOH 10 410 32 HOH HOH A . G 3 HOH 11 411 48 HOH HOH A . G 3 HOH 12 412 52 HOH HOH A . G 3 HOH 13 413 53 HOH HOH A . G 3 HOH 14 414 54 HOH HOH A . G 3 HOH 15 415 55 HOH HOH A . G 3 HOH 16 416 56 HOH HOH A . G 3 HOH 17 417 59 HOH HOH A . G 3 HOH 18 418 62 HOH HOH A . G 3 HOH 19 419 68 HOH HOH A . G 3 HOH 20 420 70 HOH HOH A . G 3 HOH 21 421 73 HOH HOH A . G 3 HOH 22 422 75 HOH HOH A . G 3 HOH 23 423 81 HOH HOH A . G 3 HOH 24 424 82 HOH HOH A . G 3 HOH 25 425 83 HOH HOH A . G 3 HOH 26 426 85 HOH HOH A . G 3 HOH 27 427 86 HOH HOH A . G 3 HOH 28 428 89 HOH HOH A . G 3 HOH 29 429 93 HOH HOH A . G 3 HOH 30 430 98 HOH HOH A . G 3 HOH 31 431 101 HOH HOH A . G 3 HOH 32 432 103 HOH HOH A . G 3 HOH 33 433 104 HOH HOH A . G 3 HOH 34 434 110 HOH HOH A . G 3 HOH 35 435 117 HOH HOH A . G 3 HOH 36 436 118 HOH HOH A . G 3 HOH 37 437 121 HOH HOH A . G 3 HOH 38 438 122 HOH HOH A . G 3 HOH 39 439 123 HOH HOH A . G 3 HOH 40 440 130 HOH HOH A . G 3 HOH 41 441 132 HOH HOH A . G 3 HOH 42 442 133 HOH HOH A . G 3 HOH 43 443 134 HOH HOH A . G 3 HOH 44 444 135 HOH HOH A . G 3 HOH 45 445 139 HOH HOH A . G 3 HOH 46 446 141 HOH HOH A . G 3 HOH 47 447 142 HOH HOH A . G 3 HOH 48 448 143 HOH HOH A . G 3 HOH 49 449 145 HOH HOH A . G 3 HOH 50 450 146 HOH HOH A . G 3 HOH 51 451 150 HOH HOH A . G 3 HOH 52 452 151 HOH HOH A . G 3 HOH 53 453 155 HOH HOH A . G 3 HOH 54 454 158 HOH HOH A . G 3 HOH 55 455 159 HOH HOH A . G 3 HOH 56 456 161 HOH HOH A . G 3 HOH 57 457 164 HOH HOH A . G 3 HOH 58 458 165 HOH HOH A . G 3 HOH 59 459 167 HOH HOH A . G 3 HOH 60 460 168 HOH HOH A . G 3 HOH 61 461 170 HOH HOH A . G 3 HOH 62 462 175 HOH HOH A . G 3 HOH 63 463 185 HOH HOH A . G 3 HOH 64 464 190 HOH HOH A . G 3 HOH 65 465 193 HOH HOH A . G 3 HOH 66 466 203 HOH HOH A . G 3 HOH 67 467 208 HOH HOH A . G 3 HOH 68 468 210 HOH HOH A . G 3 HOH 69 469 211 HOH HOH A . G 3 HOH 70 470 224 HOH HOH A . G 3 HOH 71 471 230 HOH HOH A . G 3 HOH 72 472 231 HOH HOH A . G 3 HOH 73 473 233 HOH HOH A . G 3 HOH 74 474 237 HOH HOH A . G 3 HOH 75 475 240 HOH HOH A . G 3 HOH 76 476 247 HOH HOH A . G 3 HOH 77 477 248 HOH HOH A . G 3 HOH 78 478 251 HOH HOH A . G 3 HOH 79 479 255 HOH HOH A . G 3 HOH 80 480 257 HOH HOH A . G 3 HOH 81 481 259 HOH HOH A . G 3 HOH 82 482 271 HOH HOH A . G 3 HOH 83 483 275 HOH HOH A . G 3 HOH 84 484 281 HOH HOH A . G 3 HOH 85 485 283 HOH HOH A . G 3 HOH 86 486 262 HOH HOH A . H 3 HOH 1 401 19 HOH HOH B . H 3 HOH 2 402 229 HOH HOH B . H 3 HOH 3 403 6 HOH HOH B . H 3 HOH 4 404 10 HOH HOH B . H 3 HOH 5 405 12 HOH HOH B . H 3 HOH 6 406 13 HOH HOH B . H 3 HOH 7 407 14 HOH HOH B . H 3 HOH 8 408 16 HOH HOH B . H 3 HOH 9 409 18 HOH HOH B . H 3 HOH 10 410 33 HOH HOH B . H 3 HOH 11 411 34 HOH HOH B . H 3 HOH 12 412 36 HOH HOH B . H 3 HOH 13 413 37 HOH HOH B . H 3 HOH 14 414 39 HOH HOH B . H 3 HOH 15 415 45 HOH HOH B . H 3 HOH 16 416 49 HOH HOH B . H 3 HOH 17 417 51 HOH HOH B . H 3 HOH 18 418 57 HOH HOH B . H 3 HOH 19 419 58 HOH HOH B . H 3 HOH 20 420 60 HOH HOH B . H 3 HOH 21 421 64 HOH HOH B . H 3 HOH 22 422 65 HOH HOH B . H 3 HOH 23 423 66 HOH HOH B . H 3 HOH 24 424 71 HOH HOH B . H 3 HOH 25 425 76 HOH HOH B . H 3 HOH 26 426 90 HOH HOH B . H 3 HOH 27 427 92 HOH HOH B . H 3 HOH 28 428 94 HOH HOH B . H 3 HOH 29 429 96 HOH HOH B . H 3 HOH 30 430 99 HOH HOH B . H 3 HOH 31 431 102 HOH HOH B . H 3 HOH 32 432 112 HOH HOH B . H 3 HOH 33 433 113 HOH HOH B . H 3 HOH 34 434 115 HOH HOH B . H 3 HOH 35 435 119 HOH HOH B . H 3 HOH 36 436 124 HOH HOH B . H 3 HOH 37 437 128 HOH HOH B . H 3 HOH 38 438 129 HOH HOH B . H 3 HOH 39 439 131 HOH HOH B . H 3 HOH 40 440 136 HOH HOH B . H 3 HOH 41 441 137 HOH HOH B . H 3 HOH 42 442 138 HOH HOH B . H 3 HOH 43 443 149 HOH HOH B . H 3 HOH 44 444 153 HOH HOH B . H 3 HOH 45 445 162 HOH HOH B . H 3 HOH 46 446 169 HOH HOH B . H 3 HOH 47 447 171 HOH HOH B . H 3 HOH 48 448 173 HOH HOH B . H 3 HOH 49 449 174 HOH HOH B . H 3 HOH 50 450 176 HOH HOH B . H 3 HOH 51 451 177 HOH HOH B . H 3 HOH 52 452 180 HOH HOH B . H 3 HOH 53 453 181 HOH HOH B . H 3 HOH 54 454 183 HOH HOH B . H 3 HOH 55 455 184 HOH HOH B . H 3 HOH 56 456 186 HOH HOH B . H 3 HOH 57 457 189 HOH HOH B . H 3 HOH 58 458 195 HOH HOH B . H 3 HOH 59 459 196 HOH HOH B . H 3 HOH 60 460 197 HOH HOH B . H 3 HOH 61 461 198 HOH HOH B . H 3 HOH 62 462 200 HOH HOH B . H 3 HOH 63 463 201 HOH HOH B . H 3 HOH 64 464 204 HOH HOH B . H 3 HOH 65 465 207 HOH HOH B . H 3 HOH 66 466 209 HOH HOH B . H 3 HOH 67 467 212 HOH HOH B . H 3 HOH 68 468 219 HOH HOH B . H 3 HOH 69 469 220 HOH HOH B . H 3 HOH 70 470 225 HOH HOH B . H 3 HOH 71 471 234 HOH HOH B . H 3 HOH 72 472 235 HOH HOH B . H 3 HOH 73 473 236 HOH HOH B . H 3 HOH 74 474 238 HOH HOH B . H 3 HOH 75 475 241 HOH HOH B . H 3 HOH 76 476 244 HOH HOH B . H 3 HOH 77 477 245 HOH HOH B . H 3 HOH 78 478 246 HOH HOH B . H 3 HOH 79 479 254 HOH HOH B . H 3 HOH 80 480 256 HOH HOH B . H 3 HOH 81 481 261 HOH HOH B . H 3 HOH 82 482 264 HOH HOH B . H 3 HOH 83 483 266 HOH HOH B . H 3 HOH 84 484 267 HOH HOH B . H 3 HOH 85 485 268 HOH HOH B . H 3 HOH 86 486 269 HOH HOH B . H 3 HOH 87 487 272 HOH HOH B . H 3 HOH 88 488 278 HOH HOH B . H 3 HOH 89 489 279 HOH HOH B . H 3 HOH 90 490 282 HOH HOH B . H 3 HOH 91 491 284 HOH HOH B . #