HEADER HYDROLASE 26-JAN-13 4IXN TITLE CRYSTAL STRUCTURE OF ZN(II)-BOUND E37A,C66A,C67A TRIPLE MUTANT YJIA TITLE 2 GTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED GTP-BINDING PROTEIN YJIA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B4352, JW5790, YJIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS P-LOOP GTPASE, G-PROTEIN, METAL HOMEOSTASIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.JOST,C.L.DRENNAN REVDAT 7 28-FEB-24 4IXN 1 REMARK SEQADV LINK REVDAT 6 05-MAR-14 4IXN 1 JRNL REVDAT 5 23-OCT-13 4IXN 1 JRNL REVDAT 4 03-JUL-13 4IXN 1 JRNL REVDAT 3 12-JUN-13 4IXN 1 JRNL REVDAT 2 20-MAR-13 4IXN 1 JRNL REVDAT 1 27-FEB-13 4IXN 0 JRNL AUTH A.M.SYDOR,M.JOST,K.S.RYAN,K.E.TURO,C.D.DOUGLAS,C.L.DRENNAN, JRNL AUTH 2 D.B.ZAMBLE JRNL TITL METAL BINDING PROPERTIES OF ESCHERICHIA COLI YJIA, A MEMBER JRNL TITL 2 OF THE METAL HOMEOSTASIS-ASSOCIATED COG0523 FAMILY OF JRNL TITL 3 GTPASES. JRNL REF BIOCHEMISTRY V. 52 1788 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 24449932 JRNL DOI 10.1021/BI301600Z REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 35309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 75.3651 - 4.6930 0.96 2803 154 0.1984 0.2214 REMARK 3 2 4.6930 - 3.7250 0.99 2835 160 0.1650 0.2150 REMARK 3 3 3.7250 - 3.2541 0.98 2775 160 0.1804 0.2052 REMARK 3 4 3.2541 - 2.9566 0.99 2813 136 0.2090 0.2422 REMARK 3 5 2.9566 - 2.7447 0.98 2806 122 0.2224 0.2491 REMARK 3 6 2.7447 - 2.5828 0.98 2768 165 0.2151 0.2498 REMARK 3 7 2.5828 - 2.4535 0.99 2797 145 0.2219 0.2691 REMARK 3 8 2.4535 - 2.3467 0.99 2787 150 0.2347 0.2604 REMARK 3 9 2.3467 - 2.2563 0.97 2779 133 0.2259 0.2684 REMARK 3 10 2.2563 - 2.1785 0.99 2822 146 0.2385 0.2847 REMARK 3 11 2.1785 - 2.1103 0.99 2787 136 0.2477 0.3248 REMARK 3 12 2.1103 - 2.0500 0.99 2790 140 0.2556 0.2964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4986 REMARK 3 ANGLE : 0.727 6782 REMARK 3 CHIRALITY : 0.049 803 REMARK 3 PLANARITY : 0.003 888 REMARK 3 DIHEDRAL : 11.380 1778 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESSEQ 1:123) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2012 7.8481 28.0714 REMARK 3 T TENSOR REMARK 3 T11: 0.4002 T22: 0.5058 REMARK 3 T33: 0.3248 T12: -0.0299 REMARK 3 T13: -0.0352 T23: 0.1103 REMARK 3 L TENSOR REMARK 3 L11: 2.5477 L22: 3.6830 REMARK 3 L33: 4.3439 L12: -0.3702 REMARK 3 L13: -0.0378 L23: -1.3434 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: -0.6708 S13: -0.4834 REMARK 3 S21: 0.3959 S22: 0.1090 S23: 0.0646 REMARK 3 S31: 0.2299 S32: -0.4405 S33: -0.0134 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESSEQ 124:318) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1107 22.1275 6.1208 REMARK 3 T TENSOR REMARK 3 T11: 0.2094 T22: 0.1448 REMARK 3 T33: 0.2018 T12: 0.0008 REMARK 3 T13: -0.0112 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.7474 L22: 2.7492 REMARK 3 L33: 3.4048 L12: 0.1176 REMARK 3 L13: 0.5554 L23: 0.5660 REMARK 3 S TENSOR REMARK 3 S11: -0.0750 S12: -0.0085 S13: 0.1904 REMARK 3 S21: -0.1450 S22: 0.1022 S23: 0.0001 REMARK 3 S31: -0.0881 S32: -0.1563 S33: -0.0487 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESSEQ 1:123) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4667 6.7578 9.7030 REMARK 3 T TENSOR REMARK 3 T11: 0.2585 T22: 0.2726 REMARK 3 T33: 0.2129 T12: 0.0142 REMARK 3 T13: -0.0249 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 3.4920 L22: 4.3625 REMARK 3 L33: 4.1660 L12: 0.2066 REMARK 3 L13: -1.1436 L23: 1.6035 REMARK 3 S TENSOR REMARK 3 S11: -0.1305 S12: 0.2676 S13: -0.1709 REMARK 3 S21: -0.1890 S22: 0.0378 S23: -0.0675 REMARK 3 S31: 0.1308 S32: 0.0205 S33: 0.1028 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'B' AND RESSEQ 124:318) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0697 21.3351 31.5267 REMARK 3 T TENSOR REMARK 3 T11: 0.2542 T22: 0.1915 REMARK 3 T33: 0.1781 T12: 0.0167 REMARK 3 T13: -0.0141 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.0805 L22: 3.2088 REMARK 3 L33: 3.6871 L12: 0.4914 REMARK 3 L13: 0.1966 L23: 0.9739 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: -0.0854 S13: 0.1591 REMARK 3 S21: 0.5065 S22: 0.0625 S23: -0.1200 REMARK 3 S31: 0.2157 S32: 0.0751 S33: 0.0209 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) CRYO-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35715 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 75.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59000 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 UL OF 12.4 MG/ML TRIPLE MUTANT REMARK 280 YJIA IN 0.1 M NACL, 1 MM TCEP, 25 MM HEPES, MIXED WITH 0.3 UL REMARK 280 0.1 M CACL2 AND 1.5 UL 1.3 M AMMONIUM SULFATE, 0.1 M HEPES , PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.21800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE IS NOT REMARK 300 KNOWN CRYSTAL STRUCTURE LIKELY CONTAINS A DIMER, BUT ZN(II)-BOUND REMARK 300 PROTEIN OLIGOMERIZES IN SOLUTION, AS INDICATED BY SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY. PHYSIOLOGICAL OLIGOMERIZATION STATE UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -56.07100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 LYS A 17 CE NZ REMARK 470 ARG A 22 NE CZ NH1 NH2 REMARK 470 HIS A 23 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 27 CD OE1 OE2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 LYS A 32 CE NZ REMARK 470 ASN A 38 CG OD1 ND2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 GLN A 90 CD OE1 NE2 REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 214 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 216 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 280 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 LYS A 292 CE NZ REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 LEU B 13 CG CD1 CD2 REMARK 470 LYS B 17 CE NZ REMARK 470 LYS B 32 CE NZ REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 GLN B 90 CD OE1 NE2 REMARK 470 GLU B 115 CD OE1 OE2 REMARK 470 ASP B 161 CG OD1 OD2 REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 LYS B 168 CD CE NZ REMARK 470 HIS B 170 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 ASN B 206 CG OD1 ND2 REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 214 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 215 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 216 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 217 CG1 CG2 CD1 REMARK 470 ASP B 219 CG OD1 OD2 REMARK 470 LYS B 220 CD CE NZ REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 TYR B 280 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 290 CG OD1 OD2 REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 LYS B 292 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 578 O HOH B 590 2.05 REMARK 500 O HOH A 606 O HOH A 611 2.07 REMARK 500 O HOH A 606 O HOH B 538 2.08 REMARK 500 OD2 ASP B 52 O HOH B 565 2.16 REMARK 500 OD1 ASP B 85 O HOH B 611 2.17 REMARK 500 O HOH A 604 O HOH A 628 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 -35.21 -38.52 REMARK 500 SER A 70 -160.60 -101.92 REMARK 500 GLU A 165 86.80 -68.21 REMARK 500 ALA A 166 34.40 -85.17 REMARK 500 GLN A 277 -115.96 49.17 REMARK 500 ASP A 285 -144.12 -136.25 REMARK 500 GLU B 42 99.16 -67.59 REMARK 500 SER B 70 -160.60 -101.63 REMARK 500 GLU B 165 105.01 -58.13 REMARK 500 LEU B 256 -67.20 -94.76 REMARK 500 GLN B 277 -115.25 49.63 REMARK 500 ASP B 285 -137.79 -137.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 74 OE1 REMARK 620 2 HIS A 114 NE2 107.4 REMARK 620 3 GLU B 74 OE1 98.6 133.0 REMARK 620 4 GLU B 74 OE2 145.1 85.9 52.9 REMARK 620 5 HIS B 114 NE2 123.7 108.7 86.7 79.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IXM RELATED DB: PDB REMARK 900 ZN(II) BOUND WILD-TYPE YJIA DBREF 4IXN A 1 318 UNP P24203 YJIA_ECOLI 1 318 DBREF 4IXN B 1 318 UNP P24203 YJIA_ECOLI 1 318 SEQADV 4IXN ALA A 37 UNP P24203 GLU 37 ENGINEERED MUTATION SEQADV 4IXN ALA A 66 UNP P24203 CYS 66 ENGINEERED MUTATION SEQADV 4IXN ALA A 67 UNP P24203 CYS 67 ENGINEERED MUTATION SEQADV 4IXN ALA B 37 UNP P24203 GLU 37 ENGINEERED MUTATION SEQADV 4IXN ALA B 66 UNP P24203 CYS 66 ENGINEERED MUTATION SEQADV 4IXN ALA B 67 UNP P24203 CYS 67 ENGINEERED MUTATION SEQRES 1 A 318 MET ASN PRO ILE ALA VAL THR LEU LEU THR GLY PHE LEU SEQRES 2 A 318 GLY ALA GLY LYS THR THR LEU LEU ARG HIS ILE LEU ASN SEQRES 3 A 318 GLU GLN HIS GLY TYR LYS ILE ALA VAL ILE ALA ASN GLU SEQRES 4 A 318 PHE GLY GLU VAL SER VAL ASP ASP GLN LEU ILE GLY ASP SEQRES 5 A 318 ARG ALA THR GLN ILE LYS THR LEU THR ASN GLY CYS ILE SEQRES 6 A 318 ALA ALA SER ARG SER ASN GLU LEU GLU ASP ALA LEU LEU SEQRES 7 A 318 ASP LEU LEU ASP ASN LEU ASP LYS GLY ASN ILE GLN PHE SEQRES 8 A 318 ASP ARG LEU VAL ILE GLU CYS THR GLY MET ALA ASP PRO SEQRES 9 A 318 GLY PRO ILE ILE GLN THR PHE PHE SER HIS GLU VAL LEU SEQRES 10 A 318 CYS GLN ARG TYR LEU LEU ASP GLY VAL ILE ALA LEU VAL SEQRES 11 A 318 ASP ALA VAL HIS ALA ASP GLU GLN MET ASN GLN PHE THR SEQRES 12 A 318 ILE ALA GLN SER GLN VAL GLY TYR ALA ASP ARG ILE LEU SEQRES 13 A 318 LEU THR LYS THR ASP VAL ALA GLY GLU ALA GLU LYS LEU SEQRES 14 A 318 HIS GLU ARG LEU ALA ARG ILE ASN ALA ARG ALA PRO VAL SEQRES 15 A 318 TYR THR VAL THR HIS GLY ASP ILE ASP LEU GLY LEU LEU SEQRES 16 A 318 PHE ASN THR ASN GLY PHE MET LEU GLU GLU ASN VAL VAL SEQRES 17 A 318 SER THR LYS PRO ARG PHE HIS PHE ILE ALA ASP LYS GLN SEQRES 18 A 318 ASN ASP ILE SER SER ILE VAL VAL GLU LEU ASP TYR PRO SEQRES 19 A 318 VAL ASP ILE SER GLU VAL SER ARG VAL MET GLU ASN LEU SEQRES 20 A 318 LEU LEU GLU SER ALA ASP LYS LEU LEU ARG TYR LYS GLY SEQRES 21 A 318 MET LEU TRP ILE ASP GLY GLU PRO ASN ARG LEU LEU PHE SEQRES 22 A 318 GLN GLY VAL GLN ARG LEU TYR SER ALA ASP TRP ASP ARG SEQRES 23 A 318 PRO TRP GLY ASP GLU LYS PRO HIS SER THR MET VAL PHE SEQRES 24 A 318 ILE GLY ILE GLN LEU PRO GLU GLU GLU ILE ARG ALA ALA SEQRES 25 A 318 PHE ALA GLY LEU ARG LYS SEQRES 1 B 318 MET ASN PRO ILE ALA VAL THR LEU LEU THR GLY PHE LEU SEQRES 2 B 318 GLY ALA GLY LYS THR THR LEU LEU ARG HIS ILE LEU ASN SEQRES 3 B 318 GLU GLN HIS GLY TYR LYS ILE ALA VAL ILE ALA ASN GLU SEQRES 4 B 318 PHE GLY GLU VAL SER VAL ASP ASP GLN LEU ILE GLY ASP SEQRES 5 B 318 ARG ALA THR GLN ILE LYS THR LEU THR ASN GLY CYS ILE SEQRES 6 B 318 ALA ALA SER ARG SER ASN GLU LEU GLU ASP ALA LEU LEU SEQRES 7 B 318 ASP LEU LEU ASP ASN LEU ASP LYS GLY ASN ILE GLN PHE SEQRES 8 B 318 ASP ARG LEU VAL ILE GLU CYS THR GLY MET ALA ASP PRO SEQRES 9 B 318 GLY PRO ILE ILE GLN THR PHE PHE SER HIS GLU VAL LEU SEQRES 10 B 318 CYS GLN ARG TYR LEU LEU ASP GLY VAL ILE ALA LEU VAL SEQRES 11 B 318 ASP ALA VAL HIS ALA ASP GLU GLN MET ASN GLN PHE THR SEQRES 12 B 318 ILE ALA GLN SER GLN VAL GLY TYR ALA ASP ARG ILE LEU SEQRES 13 B 318 LEU THR LYS THR ASP VAL ALA GLY GLU ALA GLU LYS LEU SEQRES 14 B 318 HIS GLU ARG LEU ALA ARG ILE ASN ALA ARG ALA PRO VAL SEQRES 15 B 318 TYR THR VAL THR HIS GLY ASP ILE ASP LEU GLY LEU LEU SEQRES 16 B 318 PHE ASN THR ASN GLY PHE MET LEU GLU GLU ASN VAL VAL SEQRES 17 B 318 SER THR LYS PRO ARG PHE HIS PHE ILE ALA ASP LYS GLN SEQRES 18 B 318 ASN ASP ILE SER SER ILE VAL VAL GLU LEU ASP TYR PRO SEQRES 19 B 318 VAL ASP ILE SER GLU VAL SER ARG VAL MET GLU ASN LEU SEQRES 20 B 318 LEU LEU GLU SER ALA ASP LYS LEU LEU ARG TYR LYS GLY SEQRES 21 B 318 MET LEU TRP ILE ASP GLY GLU PRO ASN ARG LEU LEU PHE SEQRES 22 B 318 GLN GLY VAL GLN ARG LEU TYR SER ALA ASP TRP ASP ARG SEQRES 23 B 318 PRO TRP GLY ASP GLU LYS PRO HIS SER THR MET VAL PHE SEQRES 24 B 318 ILE GLY ILE GLN LEU PRO GLU GLU GLU ILE ARG ALA ALA SEQRES 25 B 318 PHE ALA GLY LEU ARG LYS HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET SO4 A 404 5 HET SO4 B 401 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 3(ZN 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *256(H2 O) HELIX 1 1 GLY A 14 GLU A 27 1 14 HELIX 2 2 GLU A 72 LYS A 86 1 15 HELIX 3 3 ASP A 103 PHE A 111 1 9 HELIX 4 4 HIS A 114 ARG A 120 1 7 HELIX 5 5 HIS A 134 PHE A 142 1 9 HELIX 6 6 PHE A 142 TYR A 151 1 10 HELIX 7 7 LYS A 159 GLY A 164 1 6 HELIX 8 8 ALA A 166 ASN A 177 1 12 HELIX 9 9 ASP A 191 PHE A 196 5 6 HELIX 10 10 ILE A 217 GLN A 221 5 5 HELIX 11 11 ASP A 236 SER A 251 1 16 HELIX 12 12 PRO A 305 GLY A 315 1 11 HELIX 13 13 GLY B 14 GLU B 27 1 14 HELIX 14 14 GLU B 72 LYS B 86 1 15 HELIX 15 15 ASP B 103 PHE B 111 1 9 HELIX 16 16 HIS B 114 ARG B 120 1 7 HELIX 17 17 HIS B 134 PHE B 142 1 9 HELIX 18 18 PHE B 142 TYR B 151 1 10 HELIX 19 19 LYS B 159 GLY B 164 1 6 HELIX 20 20 ALA B 166 ASN B 177 1 12 HELIX 21 21 ASP B 191 PHE B 196 5 6 HELIX 22 22 HIS B 215 LYS B 220 1 6 HELIX 23 23 ASP B 236 SER B 251 1 16 HELIX 24 24 PRO B 305 GLY B 315 1 11 SHEET 1 A 9 VAL A 45 ILE A 50 0 SHEET 2 A 9 GLN A 56 LEU A 60 -1 O THR A 59 N ASP A 46 SHEET 3 A 9 ILE A 65 ALA A 67 -1 O ALA A 66 N LYS A 58 SHEET 4 A 9 ILE A 33 ILE A 36 1 N VAL A 35 O ILE A 65 SHEET 5 A 9 ARG A 93 THR A 99 1 O ARG A 93 N ALA A 34 SHEET 6 A 9 ILE A 4 GLY A 11 1 N THR A 7 O LEU A 94 SHEET 7 A 9 TYR A 121 ASP A 131 1 O ILE A 127 N LEU A 8 SHEET 8 A 9 ARG A 154 THR A 158 1 O LEU A 156 N VAL A 130 SHEET 9 A 9 VAL A 182 THR A 184 1 O TYR A 183 N ILE A 155 SHEET 1 B 5 ILE A 224 LEU A 231 0 SHEET 2 B 5 SER A 295 ILE A 302 -1 O PHE A 299 N ILE A 227 SHEET 3 B 5 LEU A 255 LEU A 262 -1 N LEU A 256 O ILE A 300 SHEET 4 B 5 ASN A 269 VAL A 276 -1 O LEU A 271 N LEU A 262 SHEET 5 B 5 LEU A 279 PRO A 287 -1 O LEU A 279 N VAL A 276 SHEET 1 C 9 VAL B 45 ILE B 50 0 SHEET 2 C 9 GLN B 56 LEU B 60 -1 O ILE B 57 N LEU B 49 SHEET 3 C 9 ILE B 65 ALA B 67 -1 O ALA B 66 N LYS B 58 SHEET 4 C 9 ILE B 33 ILE B 36 1 N VAL B 35 O ILE B 65 SHEET 5 C 9 ARG B 93 THR B 99 1 O ARG B 93 N ALA B 34 SHEET 6 C 9 ILE B 4 GLY B 11 1 N THR B 7 O LEU B 94 SHEET 7 C 9 TYR B 121 ASP B 131 1 O ASP B 124 N VAL B 6 SHEET 8 C 9 ARG B 154 THR B 158 1 O LEU B 156 N ALA B 128 SHEET 9 C 9 VAL B 182 THR B 184 1 O TYR B 183 N ILE B 155 SHEET 1 D 5 ILE B 224 LEU B 231 0 SHEET 2 D 5 SER B 295 ILE B 302 -1 O PHE B 299 N ILE B 227 SHEET 3 D 5 LEU B 255 LEU B 262 -1 N LEU B 256 O ILE B 300 SHEET 4 D 5 ASN B 269 VAL B 276 -1 O LEU B 271 N LEU B 262 SHEET 5 D 5 LEU B 279 PRO B 287 -1 O LEU B 279 N VAL B 276 LINK OE1 GLU A 74 ZN ZN A 401 1555 1555 2.02 LINK NE2 HIS A 114 ZN ZN A 401 1555 1555 2.07 LINK ND1 HIS A 170 ZN ZN A 402 1555 1555 2.58 LINK NE2 HIS A 187 ZN ZN A 403 1555 1555 2.07 LINK ZN ZN A 401 OE1 GLU B 74 1555 1555 2.14 LINK ZN ZN A 401 OE2 GLU B 74 1555 1555 2.67 LINK ZN ZN A 401 NE2 HIS B 114 1555 1555 1.98 SITE 1 AC1 4 GLU A 74 HIS A 114 GLU B 74 HIS B 114 SITE 1 AC2 3 GLU A 167 HIS A 170 HIS B 187 SITE 1 AC3 2 HIS A 187 GLU B 167 SITE 1 AC4 3 HIS A 114 GLU A 115 HOH A 570 SITE 1 AC5 3 HIS B 114 GLU B 115 HOH B 552 CRYST1 56.071 68.436 77.699 90.00 104.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017835 0.000000 0.004523 0.00000 SCALE2 0.000000 0.014612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013278 0.00000