HEADER OXIDOREDUCTASE 30-JAN-13 4J0F TITLE CRYSTAL STRUCTURE OF 3-HYDROXYACYL-COA DEHYDROGENASE FROM TITLE 2 CAENORHADBITIS ELEGANS IN P212121 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 3-HYDROXYACYL-COA DEHYDROGENASE F54C8.1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.35; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: F54C8.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEXS-CG (RECONSTRUCTED PLASMID BASED ON SOURCE 11 PET-22B) KEYWDS ROSSMANN FOLD, DEHYDROGENASE, FATTY ACID BETA-OXIDATION, NADH KEYWDS 2 BINDING, MITOCHONDRIAL MATRIX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.XU,F.SUN,Y.ZHAI REVDAT 3 08-NOV-23 4J0F 1 SEQADV REVDAT 2 11-FEB-15 4J0F 1 JRNL REVDAT 1 19-MAR-14 4J0F 0 JRNL AUTH Y.XU,F.SUN JRNL TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY JRNL TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF 3-HYDROXYACYL-COA DEHYDROGENASE JRNL TITL 3 FROM CAENORHABDITIS ELEGANS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 515 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23695566 JRNL DOI 10.1107/S1744309113007045 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 33525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1765 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.24000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -2.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.067 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4333 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5862 ; 1.894 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 5.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;33.834 ;24.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;14.403 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;24.773 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 690 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3215 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4J0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 73.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3HAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350, 0.2M SODIUM CHLORIDE, REMARK 280 0.1M BICINE PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.27850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.11300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.18550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.11300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.27850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.18550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 CYS A 6 REMARK 465 ALA A 7 REMARK 465 MET A 8 REMARK 465 LYS A 66 REMARK 465 LYS A 297 REMARK 465 LYS A 298 REMARK 465 GLU A 299 REMARK 465 PHE A 300 REMARK 465 GLY A 301 REMARK 465 THR A 302 REMARK 465 SER A 303 REMARK 465 SER A 304 REMARK 465 THR A 305 REMARK 465 GLY A 306 REMARK 465 SER A 307 REMARK 465 SER A 308 REMARK 465 GLY A 309 REMARK 465 SER A 310 REMARK 465 SER A 311 REMARK 465 LEU A 312 REMARK 465 GLU A 313 REMARK 465 VAL A 314 REMARK 465 LEU A 315 REMARK 465 PHE A 316 REMARK 465 GLN A 317 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 LYS B 5 REMARK 465 CYS B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 64 REMARK 465 GLN B 65 REMARK 465 LYS B 66 REMARK 465 GLY B 67 REMARK 465 LYS B 297 REMARK 465 LYS B 298 REMARK 465 GLU B 299 REMARK 465 PHE B 300 REMARK 465 GLY B 301 REMARK 465 THR B 302 REMARK 465 SER B 303 REMARK 465 SER B 304 REMARK 465 THR B 305 REMARK 465 GLY B 306 REMARK 465 SER B 307 REMARK 465 SER B 308 REMARK 465 GLY B 309 REMARK 465 SER B 310 REMARK 465 SER B 311 REMARK 465 LEU B 312 REMARK 465 GLU B 313 REMARK 465 VAL B 314 REMARK 465 LEU B 315 REMARK 465 PHE B 316 REMARK 465 GLN B 317 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 44 CG CD REMARK 480 LYS A 52 CD CE NZ REMARK 480 GLN A 56 CD OE1 NE2 REMARK 480 LYS A 64 CG CD CE NZ REMARK 480 GLN A 65 CB CG NE2 REMARK 480 LYS A 70 CB CG CD CE NZ REMARK 480 GLU A 71 CG CD OE1 OE2 REMARK 480 LYS A 72 CD CE NZ REMARK 480 LYS A 123 CG CD NZ REMARK 480 LYS A 141 CG CD CE REMARK 480 LYS A 162 CD CE NZ REMARK 480 GLU A 175 CG CD OE1 OE2 REMARK 480 LYS A 182 CG CD CE NZ REMARK 480 LYS A 278 CE NZ REMARK 480 GLN B 9 CB CG CD OE1 NE2 REMARK 480 ARG B 12 CD NE CZ NH1 NH2 REMARK 480 LYS B 44 CG CD REMARK 480 LYS B 45 CG CD CE NZ REMARK 480 ARG B 49 CD NE REMARK 480 LYS B 52 CG CD CE NZ REMARK 480 SER B 55 OG REMARK 480 LYS B 63 CE NZ REMARK 480 LYS B 70 CE NZ REMARK 480 GLU B 71 CG CD REMARK 480 LYS B 72 CG CD CE NZ REMARK 480 LYS B 84 CE NZ REMARK 480 ASP B 95 OD1 OD2 REMARK 480 GLU B 137 CG CD OE1 OE2 REMARK 480 LYS B 141 CD CE NZ REMARK 480 ARG B 148 NE CZ NH1 NH2 REMARK 480 LYS B 278 CG CD CE NZ REMARK 480 LYS B 284 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 123 CE LYS A 123 NZ -0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 123 CD - CE - NZ ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG B 49 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 49 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 200 -136.33 53.97 REMARK 500 PHE B 200 -125.36 52.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J0E RELATED DB: PDB DBREF 4J0F A 1 298 UNP P34439 HCDH1_CAEEL 1 298 DBREF 4J0F B 1 298 UNP P34439 HCDH1_CAEEL 1 298 SEQADV 4J0F MET A -2 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLY A -1 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER A 0 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLU A 299 UNP P34439 EXPRESSION TAG SEQADV 4J0F PHE A 300 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLY A 301 UNP P34439 EXPRESSION TAG SEQADV 4J0F THR A 302 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER A 303 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER A 304 UNP P34439 EXPRESSION TAG SEQADV 4J0F THR A 305 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLY A 306 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER A 307 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER A 308 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLY A 309 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER A 310 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER A 311 UNP P34439 EXPRESSION TAG SEQADV 4J0F LEU A 312 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLU A 313 UNP P34439 EXPRESSION TAG SEQADV 4J0F VAL A 314 UNP P34439 EXPRESSION TAG SEQADV 4J0F LEU A 315 UNP P34439 EXPRESSION TAG SEQADV 4J0F PHE A 316 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLN A 317 UNP P34439 EXPRESSION TAG SEQADV 4J0F MET B -2 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLY B -1 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER B 0 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLU B 299 UNP P34439 EXPRESSION TAG SEQADV 4J0F PHE B 300 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLY B 301 UNP P34439 EXPRESSION TAG SEQADV 4J0F THR B 302 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER B 303 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER B 304 UNP P34439 EXPRESSION TAG SEQADV 4J0F THR B 305 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLY B 306 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER B 307 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER B 308 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLY B 309 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER B 310 UNP P34439 EXPRESSION TAG SEQADV 4J0F SER B 311 UNP P34439 EXPRESSION TAG SEQADV 4J0F LEU B 312 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLU B 313 UNP P34439 EXPRESSION TAG SEQADV 4J0F VAL B 314 UNP P34439 EXPRESSION TAG SEQADV 4J0F LEU B 315 UNP P34439 EXPRESSION TAG SEQADV 4J0F PHE B 316 UNP P34439 EXPRESSION TAG SEQADV 4J0F GLN B 317 UNP P34439 EXPRESSION TAG SEQRES 1 A 320 MET GLY SER MET PHE THR ALA LYS CYS ALA MET GLN ASN SEQRES 2 A 320 ILE ARG ASN VAL ALA ILE VAL GLY SER GLY GLN MET GLY SEQRES 3 A 320 SER GLY ILE ALA GLN VAL THR ALA SER SER GLY PHE ASN SEQRES 4 A 320 VAL MET LEU ALA ASP VAL ASN LYS LYS ALA LEU ASP ARG SEQRES 5 A 320 ALA MET LYS ALA ILE SER GLN SER VAL THR HIS LEU SER SEQRES 6 A 320 LYS LYS GLN LYS GLY THR ASP LYS GLU LYS SER ASP PHE SEQRES 7 A 320 VAL THR LEU THR MET SER ARG ILE LYS THR CYS ASN ASN SEQRES 8 A 320 VAL SER THR ALA VAL ALA ASP ALA ASP LEU ILE ILE GLU SEQRES 9 A 320 ALA ALA ILE GLU ASN ILE ASP LEU LYS ARG GLY ILE PHE SEQRES 10 A 320 ALA GLN ILE GLU GLN SER CYS LYS LYS ASP SER ILE LEU SEQRES 11 A 320 THR THR ASN THR SER SER PHE LEU LEU GLU ASP VAL ALA SEQRES 12 A 320 LYS GLY LEU GLN ASP LYS THR ARG PHE GLY GLY LEU HIS SEQRES 13 A 320 PHE PHE ASN PRO VAL PRO VAL MET LYS LEU LEU GLU VAL SEQRES 14 A 320 ILE ARG SER ASP ASP THR SER ASP GLU THR TYR ALA THR SEQRES 15 A 320 LEU ILE LYS PHE GLY THR ALA VAL GLY LYS THR THR VAL SEQRES 16 A 320 ALA CYS LYS ASP SER PRO GLY PHE ILE VAL ASN ARG LEU SEQRES 17 A 320 LEU ILE PRO TYR PHE PHE GLU ALA ALA ARG MET TYR GLU SEQRES 18 A 320 ARG GLY ASP ALA SER MET THR ASP ILE ASP GLU ALA MET SEQRES 19 A 320 LYS LEU GLY ALA GLY HIS PRO MET GLY PRO PHE GLU LEU SEQRES 20 A 320 ALA ASP TYR ILE GLY LEU ASP THR VAL LYS PHE VAL MET SEQRES 21 A 320 ASP GLY TRP ALA ALA LYS TYR PRO GLU VAL GLN LEU PHE SEQRES 22 A 320 GLU ALA SER PRO LEU VAL ASP LYS LEU VAL ALA GLU GLY SEQRES 23 A 320 LYS LEU GLY ARG LYS THR GLY ASP GLY PHE TYR SER TYR SEQRES 24 A 320 LYS LYS GLU PHE GLY THR SER SER THR GLY SER SER GLY SEQRES 25 A 320 SER SER LEU GLU VAL LEU PHE GLN SEQRES 1 B 320 MET GLY SER MET PHE THR ALA LYS CYS ALA MET GLN ASN SEQRES 2 B 320 ILE ARG ASN VAL ALA ILE VAL GLY SER GLY GLN MET GLY SEQRES 3 B 320 SER GLY ILE ALA GLN VAL THR ALA SER SER GLY PHE ASN SEQRES 4 B 320 VAL MET LEU ALA ASP VAL ASN LYS LYS ALA LEU ASP ARG SEQRES 5 B 320 ALA MET LYS ALA ILE SER GLN SER VAL THR HIS LEU SER SEQRES 6 B 320 LYS LYS GLN LYS GLY THR ASP LYS GLU LYS SER ASP PHE SEQRES 7 B 320 VAL THR LEU THR MET SER ARG ILE LYS THR CYS ASN ASN SEQRES 8 B 320 VAL SER THR ALA VAL ALA ASP ALA ASP LEU ILE ILE GLU SEQRES 9 B 320 ALA ALA ILE GLU ASN ILE ASP LEU LYS ARG GLY ILE PHE SEQRES 10 B 320 ALA GLN ILE GLU GLN SER CYS LYS LYS ASP SER ILE LEU SEQRES 11 B 320 THR THR ASN THR SER SER PHE LEU LEU GLU ASP VAL ALA SEQRES 12 B 320 LYS GLY LEU GLN ASP LYS THR ARG PHE GLY GLY LEU HIS SEQRES 13 B 320 PHE PHE ASN PRO VAL PRO VAL MET LYS LEU LEU GLU VAL SEQRES 14 B 320 ILE ARG SER ASP ASP THR SER ASP GLU THR TYR ALA THR SEQRES 15 B 320 LEU ILE LYS PHE GLY THR ALA VAL GLY LYS THR THR VAL SEQRES 16 B 320 ALA CYS LYS ASP SER PRO GLY PHE ILE VAL ASN ARG LEU SEQRES 17 B 320 LEU ILE PRO TYR PHE PHE GLU ALA ALA ARG MET TYR GLU SEQRES 18 B 320 ARG GLY ASP ALA SER MET THR ASP ILE ASP GLU ALA MET SEQRES 19 B 320 LYS LEU GLY ALA GLY HIS PRO MET GLY PRO PHE GLU LEU SEQRES 20 B 320 ALA ASP TYR ILE GLY LEU ASP THR VAL LYS PHE VAL MET SEQRES 21 B 320 ASP GLY TRP ALA ALA LYS TYR PRO GLU VAL GLN LEU PHE SEQRES 22 B 320 GLU ALA SER PRO LEU VAL ASP LYS LEU VAL ALA GLU GLY SEQRES 23 B 320 LYS LEU GLY ARG LYS THR GLY ASP GLY PHE TYR SER TYR SEQRES 24 B 320 LYS LYS GLU PHE GLY THR SER SER THR GLY SER SER GLY SEQRES 25 B 320 SER SER LEU GLU VAL LEU PHE GLN FORMUL 3 HOH *160(H2 O) HELIX 1 1 GLY A 20 SER A 33 1 14 HELIX 2 2 ASN A 43 LYS A 63 1 21 HELIX 3 3 THR A 68 ARG A 82 1 15 HELIX 4 4 ASN A 88 ALA A 94 1 7 HELIX 5 5 ASN A 106 CYS A 121 1 16 HELIX 6 6 LEU A 135 ALA A 140 1 6 HELIX 7 7 ASP A 145 THR A 147 5 3 HELIX 8 8 SER A 173 VAL A 187 1 15 HELIX 9 9 ILE A 201 GLY A 220 1 20 HELIX 10 10 SER A 223 GLY A 236 1 14 HELIX 11 11 GLY A 240 GLY A 249 1 10 HELIX 12 12 GLY A 249 TYR A 264 1 16 HELIX 13 13 SER A 273 GLU A 282 1 10 HELIX 14 14 GLY A 286 GLY A 290 5 5 HELIX 15 15 GLY B 20 SER B 33 1 14 HELIX 16 16 ASN B 43 LYS B 63 1 21 HELIX 17 17 LYS B 70 ARG B 82 1 13 HELIX 18 18 ASN B 88 ALA B 94 1 7 HELIX 19 19 ASN B 106 CYS B 121 1 16 HELIX 20 20 LEU B 135 ALA B 140 1 6 HELIX 21 21 ASP B 145 THR B 147 5 3 HELIX 22 22 SER B 173 VAL B 187 1 15 HELIX 23 23 ILE B 201 ARG B 219 1 19 HELIX 24 24 SER B 223 GLY B 236 1 14 HELIX 25 25 GLY B 240 GLY B 249 1 10 HELIX 26 26 GLY B 249 TYR B 264 1 16 HELIX 27 27 VAL B 267 GLU B 271 5 5 HELIX 28 28 SER B 273 GLU B 282 1 10 SHEET 1 A 8 ILE A 83 CYS A 86 0 SHEET 2 A 8 ASN A 36 ALA A 40 1 N LEU A 39 O LYS A 84 SHEET 3 A 8 ASN A 13 VAL A 17 1 N ILE A 16 O MET A 38 SHEET 4 A 8 LEU A 98 GLU A 101 1 O ILE A 100 N ALA A 15 SHEET 5 A 8 ILE A 126 THR A 129 1 O ILE A 126 N ILE A 99 SHEET 6 A 8 PHE A 149 HIS A 153 1 O LEU A 152 N THR A 129 SHEET 7 A 8 LEU A 163 ARG A 168 -1 O GLU A 165 N HIS A 153 SHEET 8 A 8 THR A 190 LYS A 195 1 O VAL A 192 N VAL A 166 SHEET 1 B 8 ILE B 83 CYS B 86 0 SHEET 2 B 8 ASN B 36 ALA B 40 1 N LEU B 39 O LYS B 84 SHEET 3 B 8 ASN B 13 VAL B 17 1 N VAL B 14 O ASN B 36 SHEET 4 B 8 LEU B 98 GLU B 101 1 O ILE B 100 N ALA B 15 SHEET 5 B 8 ILE B 126 THR B 129 1 O THR B 128 N GLU B 101 SHEET 6 B 8 PHE B 149 PHE B 154 1 O LEU B 152 N THR B 129 SHEET 7 B 8 LEU B 163 ARG B 168 -1 O GLU B 165 N HIS B 153 SHEET 8 B 8 THR B 190 LYS B 195 1 O VAL B 192 N VAL B 166 CISPEP 1 ASN A 156 PRO A 157 0 -10.87 CISPEP 2 ASN B 156 PRO B 157 0 -12.13 CRYST1 62.557 96.371 114.226 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008755 0.00000