HEADER VIRAL PROTEIN/RNA 01-FEB-13 4J1G TITLE LEANYER ORTHOBUNYAVIRUS NUCLEOPROTEIN-SSRNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID; COMPND 3 CHAIN: A, D, C, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (45-MER); COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEANYER VIRUS; SOURCE 3 ORGANISM_TAXID: 999729; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES KEYWDS PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN, RNA BINDING, NUCLEOCAPSID KEYWDS 2 PROTEIN, VIRAL PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.NIU,N.SHAW,Y.WANG,L.JIAO,W.DING,X.LI,P.ZHU,H.UPUR,S.OUYANG,G.CHENG, AUTHOR 2 Z.J.LIU REVDAT 3 28-FEB-24 4J1G 1 REMARK REVDAT 2 12-JUN-13 4J1G 1 JRNL REVDAT 1 10-APR-13 4J1G 0 JRNL AUTH F.NIU,N.SHAW,Y.E.WANG,L.JIAO,W.DING,X.LI,P.ZHU,H.UPUR, JRNL AUTH 2 S.OUYANG,G.CHENG,Z.J.LIU JRNL TITL STRUCTURE OF THE LEANYER ORTHOBUNYAVIRUS NUCLEOPROTEIN-RNA JRNL TITL 2 COMPLEX REVEALS UNIQUE ARCHITECTURE FOR RNA ENCAPSIDATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 9054 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23569220 JRNL DOI 10.1073/PNAS.1300035110 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 23912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.360 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0542 - 6.7154 0.99 1670 152 0.1800 0.1937 REMARK 3 2 6.7154 - 5.3324 1.00 1682 153 0.2194 0.2479 REMARK 3 3 5.3324 - 4.6590 1.00 1672 153 0.2130 0.2769 REMARK 3 4 4.6590 - 4.2333 0.99 1667 151 0.2147 0.2530 REMARK 3 5 4.2333 - 3.9301 0.99 1653 151 0.2162 0.2778 REMARK 3 6 3.9301 - 3.6984 0.99 1676 153 0.2577 0.3211 REMARK 3 7 3.6984 - 3.5133 0.99 1633 149 0.2698 0.2949 REMARK 3 8 3.5133 - 3.3604 0.99 1653 150 0.2848 0.3706 REMARK 3 9 3.3604 - 3.2310 0.98 1676 152 0.2959 0.3629 REMARK 3 10 3.2310 - 3.1196 0.96 1587 146 0.3074 0.3207 REMARK 3 11 3.1196 - 3.0220 0.92 1601 146 0.3138 0.3662 REMARK 3 12 3.0220 - 2.9357 0.86 1403 129 0.3363 0.3523 REMARK 3 13 2.9357 - 2.8584 0.77 1314 120 0.3192 0.3842 REMARK 3 14 2.8584 - 2.7890 0.62 1027 93 0.3311 0.3514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 8348 REMARK 3 ANGLE : 1.445 11469 REMARK 3 CHIRALITY : 0.077 1304 REMARK 3 PLANARITY : 0.008 1326 REMARK 3 DIHEDRAL : 17.179 3224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 48.047 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: X2DF REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.2 MM AMMONIUM CITRATE TRIBASIC REMARK 280 (PH 7.0) AND 15 - 18% (W/V) PEG3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -181.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, C, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 PRO A 5 REMARK 465 SER A 234 REMARK 465 VAL A 235 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 THR D 3 REMARK 465 GLY D 4 REMARK 465 PRO D 5 REMARK 465 ILE D 233 REMARK 465 SER D 234 REMARK 465 VAL D 235 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 THR C 3 REMARK 465 GLY C 4 REMARK 465 PRO C 5 REMARK 465 SER C 234 REMARK 465 VAL C 235 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 PRO B 5 REMARK 465 ILE B 233 REMARK 465 SER B 234 REMARK 465 VAL B 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U E 45 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U E 45 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U E 45 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA A 15 O HOH A 311 1.73 REMARK 500 CB SER A 18 OP2 U E 45 1.74 REMARK 500 N ALA C 192 O HOH C 308 1.81 REMARK 500 OD2 ASP D 40 O HOH D 309 1.81 REMARK 500 OE2 GLU A 119 O HOH A 308 1.84 REMARK 500 N LYS B 50 O HOH B 303 1.84 REMARK 500 N3 U E 29 O HOH E 110 1.84 REMARK 500 O ILE A 8 O HOH A 305 1.85 REMARK 500 O HOH E 111 O HOH E 112 1.85 REMARK 500 OP2 U E 4 O HOH E 107 1.89 REMARK 500 NH1 ARG A 12 O HOH A 304 1.90 REMARK 500 N LYS C 155 O HOH C 307 1.94 REMARK 500 N ALA C 89 O HOH C 304 1.96 REMARK 500 O VAL D 209 O HOH D 304 1.96 REMARK 500 O VAL C 16 O HOH C 302 1.96 REMARK 500 OD2 ASP D 138 O HOH D 307 1.99 REMARK 500 N THR B 189 O HOH B 304 1.99 REMARK 500 N ILE C 93 O HOH C 306 1.99 REMARK 500 NH1 ARG C 72 O HOH C 313 2.01 REMARK 500 N3 U E 22 O HOH E 102 2.02 REMARK 500 OP1 U E 37 O HOH E 101 2.03 REMARK 500 OP2 U E 10 O HOH E 105 2.06 REMARK 500 OG1 THR B 19 OD2 ASP B 90 2.06 REMARK 500 OE1 GLN A 167 NZ LYS A 171 2.07 REMARK 500 OD2 ASP A 65 NH1 ARG A 72 2.07 REMARK 500 O4 U E 35 O HOH E 114 2.07 REMARK 500 N3 U E 24 O HOH E 104 2.08 REMARK 500 O VAL B 88 O HOH B 302 2.10 REMARK 500 O PHE C 231 O HOH C 301 2.11 REMARK 500 O VAL B 125 O HOH B 301 2.12 REMARK 500 OD1 ASP A 194 OG SER A 198 2.13 REMARK 500 O LYS A 181 N LYS A 184 2.13 REMARK 500 O GLY A 25 O HOH A 303 2.14 REMARK 500 O2 U E 34 O HOH E 109 2.14 REMARK 500 O2' U E 33 O2 U E 35 2.15 REMARK 500 NZ LYS D 181 OP2 U E 36 2.15 REMARK 500 ND2 ASN A 83 O HOH A 306 2.16 REMARK 500 N VAL C 16 O HOH C 302 2.17 REMARK 500 N ILE D 126 OH TYR D 143 2.17 REMARK 500 O LYS D 135 O HOH D 307 2.18 REMARK 500 OE2 GLU B 130 OH TYR B 143 2.19 REMARK 500 NH2 ARG B 180 O4 U E 14 2.19 REMARK 500 O ILE C 233 O HOH C 303 2.19 REMARK 500 OH TYR D 160 O HOH D 303 2.19 REMARK 500 CG2 THR D 70 O HOH D 309 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U E 1 C3' - C2' - O2' ANGL. DEV. = -22.3 DEGREES REMARK 500 U E 1 N1 - C2 - O2 ANGL. DEV. = 4.7 DEGREES REMARK 500 U E 25 O4' - C1' - N1 ANGL. DEV. = -6.8 DEGREES REMARK 500 U E 38 O3' - P - OP1 ANGL. DEV. = 16.0 DEGREES REMARK 500 U E 38 O5' - P - OP1 ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 -168.89 177.69 REMARK 500 VAL A 16 85.92 157.42 REMARK 500 THR A 19 -87.63 -69.64 REMARK 500 PHE A 20 100.80 -5.66 REMARK 500 ARG A 84 -8.69 -59.77 REMARK 500 ARG A 180 -93.01 -54.64 REMARK 500 LYS A 181 -82.54 -17.63 REMARK 500 VAL A 182 -37.75 -34.45 REMARK 500 ARG C 84 -9.72 -58.72 REMARK 500 PHE C 231 -61.05 -120.42 REMARK 500 ARG B 84 -9.91 -57.57 REMARK 500 TRP B 215 -125.84 49.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 218 GLY A 219 -30.82 REMARK 500 ILE C 8 TYR C 9 -146.21 REMARK 500 TRP B 215 ALA B 216 140.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J1J RELATED DB: PDB DBREF 4J1G A 1 235 UNP F2WAD7 F2WAD7_9VIRU 1 235 DBREF 4J1G D 1 235 UNP F2WAD7 F2WAD7_9VIRU 1 235 DBREF 4J1G C 1 235 UNP F2WAD7 F2WAD7_9VIRU 1 235 DBREF 4J1G B 1 235 UNP F2WAD7 F2WAD7_9VIRU 1 235 DBREF 4J1G E 1 45 PDB 4J1G 4J1G 1 45 SEQRES 1 A 235 MET SER THR GLY PRO ASP PHE ILE TYR ASP ASP ARG PRO SEQRES 2 A 235 ALA ALA VAL SER SER THR PHE ASN PRO GLU LYS GLY TYR SEQRES 3 A 235 MET ASP PHE ILE THR ALA TYR GLY LYS ASN ILE ASN ALA SEQRES 4 A 235 ASP ASN VAL ARG ILE PHE PHE LEU ASN HIS LYS LYS ALA SEQRES 5 A 235 LYS ASP SER LEU LYS GLY SER PRO LYS VAL GLU VAL ASP SEQRES 6 A 235 LEU GLN PHE GLY THR LEU ARG VAL LYS VAL VAL ASN ASN SEQRES 7 A 235 HIS ASN PRO ARG ASN ARG ASP ASN PRO VAL ALA ASP ASN SEQRES 8 A 235 ALA ILE THR LEU HIS ARG LEU SER GLY TYR LEU ALA LYS SEQRES 9 A 235 TRP CYS PHE ASP GLU ILE ASP HIS GLY GLN ILE GLU GLU SEQRES 10 A 235 ALA GLU VAL LYS SER LYS VAL VAL ILE PRO LEU ALA GLU SEQRES 11 A 235 ALA LYS GLY CYS LYS TRP GLY ASP GLY VAL ALA LEU TYR SEQRES 12 A 235 LEU ALA PHE ALA PRO GLY ALA GLU MET PHE LEU LYS ASP SEQRES 13 A 235 PHE GLU PHE TYR PRO LEU ALA ILE ASP ILE GLN ARG VAL SEQRES 14 A 235 VAL LYS ASP GLY MET ASP ILE THR PHE MET ARG LYS VAL SEQRES 15 A 235 LEU LYS GLN ARG TYR GLY THR LYS THR ALA ASP ASP TRP SEQRES 16 A 235 MET ILE SER GLU VAL THR ALA ILE GLN SER ALA VAL LYS SEQRES 17 A 235 VAL VAL ALA LYS LEU PRO TRP ALA LYS ALA GLY PHE THR SEQRES 18 A 235 ALA ALA ALA LYS ASN PHE LEU ALA LYS PHE ASN ILE SER SEQRES 19 A 235 VAL SEQRES 1 D 235 MET SER THR GLY PRO ASP PHE ILE TYR ASP ASP ARG PRO SEQRES 2 D 235 ALA ALA VAL SER SER THR PHE ASN PRO GLU LYS GLY TYR SEQRES 3 D 235 MET ASP PHE ILE THR ALA TYR GLY LYS ASN ILE ASN ALA SEQRES 4 D 235 ASP ASN VAL ARG ILE PHE PHE LEU ASN HIS LYS LYS ALA SEQRES 5 D 235 LYS ASP SER LEU LYS GLY SER PRO LYS VAL GLU VAL ASP SEQRES 6 D 235 LEU GLN PHE GLY THR LEU ARG VAL LYS VAL VAL ASN ASN SEQRES 7 D 235 HIS ASN PRO ARG ASN ARG ASP ASN PRO VAL ALA ASP ASN SEQRES 8 D 235 ALA ILE THR LEU HIS ARG LEU SER GLY TYR LEU ALA LYS SEQRES 9 D 235 TRP CYS PHE ASP GLU ILE ASP HIS GLY GLN ILE GLU GLU SEQRES 10 D 235 ALA GLU VAL LYS SER LYS VAL VAL ILE PRO LEU ALA GLU SEQRES 11 D 235 ALA LYS GLY CYS LYS TRP GLY ASP GLY VAL ALA LEU TYR SEQRES 12 D 235 LEU ALA PHE ALA PRO GLY ALA GLU MET PHE LEU LYS ASP SEQRES 13 D 235 PHE GLU PHE TYR PRO LEU ALA ILE ASP ILE GLN ARG VAL SEQRES 14 D 235 VAL LYS ASP GLY MET ASP ILE THR PHE MET ARG LYS VAL SEQRES 15 D 235 LEU LYS GLN ARG TYR GLY THR LYS THR ALA ASP ASP TRP SEQRES 16 D 235 MET ILE SER GLU VAL THR ALA ILE GLN SER ALA VAL LYS SEQRES 17 D 235 VAL VAL ALA LYS LEU PRO TRP ALA LYS ALA GLY PHE THR SEQRES 18 D 235 ALA ALA ALA LYS ASN PHE LEU ALA LYS PHE ASN ILE SER SEQRES 19 D 235 VAL SEQRES 1 C 235 MET SER THR GLY PRO ASP PHE ILE TYR ASP ASP ARG PRO SEQRES 2 C 235 ALA ALA VAL SER SER THR PHE ASN PRO GLU LYS GLY TYR SEQRES 3 C 235 MET ASP PHE ILE THR ALA TYR GLY LYS ASN ILE ASN ALA SEQRES 4 C 235 ASP ASN VAL ARG ILE PHE PHE LEU ASN HIS LYS LYS ALA SEQRES 5 C 235 LYS ASP SER LEU LYS GLY SER PRO LYS VAL GLU VAL ASP SEQRES 6 C 235 LEU GLN PHE GLY THR LEU ARG VAL LYS VAL VAL ASN ASN SEQRES 7 C 235 HIS ASN PRO ARG ASN ARG ASP ASN PRO VAL ALA ASP ASN SEQRES 8 C 235 ALA ILE THR LEU HIS ARG LEU SER GLY TYR LEU ALA LYS SEQRES 9 C 235 TRP CYS PHE ASP GLU ILE ASP HIS GLY GLN ILE GLU GLU SEQRES 10 C 235 ALA GLU VAL LYS SER LYS VAL VAL ILE PRO LEU ALA GLU SEQRES 11 C 235 ALA LYS GLY CYS LYS TRP GLY ASP GLY VAL ALA LEU TYR SEQRES 12 C 235 LEU ALA PHE ALA PRO GLY ALA GLU MET PHE LEU LYS ASP SEQRES 13 C 235 PHE GLU PHE TYR PRO LEU ALA ILE ASP ILE GLN ARG VAL SEQRES 14 C 235 VAL LYS ASP GLY MET ASP ILE THR PHE MET ARG LYS VAL SEQRES 15 C 235 LEU LYS GLN ARG TYR GLY THR LYS THR ALA ASP ASP TRP SEQRES 16 C 235 MET ILE SER GLU VAL THR ALA ILE GLN SER ALA VAL LYS SEQRES 17 C 235 VAL VAL ALA LYS LEU PRO TRP ALA LYS ALA GLY PHE THR SEQRES 18 C 235 ALA ALA ALA LYS ASN PHE LEU ALA LYS PHE ASN ILE SER SEQRES 19 C 235 VAL SEQRES 1 B 235 MET SER THR GLY PRO ASP PHE ILE TYR ASP ASP ARG PRO SEQRES 2 B 235 ALA ALA VAL SER SER THR PHE ASN PRO GLU LYS GLY TYR SEQRES 3 B 235 MET ASP PHE ILE THR ALA TYR GLY LYS ASN ILE ASN ALA SEQRES 4 B 235 ASP ASN VAL ARG ILE PHE PHE LEU ASN HIS LYS LYS ALA SEQRES 5 B 235 LYS ASP SER LEU LYS GLY SER PRO LYS VAL GLU VAL ASP SEQRES 6 B 235 LEU GLN PHE GLY THR LEU ARG VAL LYS VAL VAL ASN ASN SEQRES 7 B 235 HIS ASN PRO ARG ASN ARG ASP ASN PRO VAL ALA ASP ASN SEQRES 8 B 235 ALA ILE THR LEU HIS ARG LEU SER GLY TYR LEU ALA LYS SEQRES 9 B 235 TRP CYS PHE ASP GLU ILE ASP HIS GLY GLN ILE GLU GLU SEQRES 10 B 235 ALA GLU VAL LYS SER LYS VAL VAL ILE PRO LEU ALA GLU SEQRES 11 B 235 ALA LYS GLY CYS LYS TRP GLY ASP GLY VAL ALA LEU TYR SEQRES 12 B 235 LEU ALA PHE ALA PRO GLY ALA GLU MET PHE LEU LYS ASP SEQRES 13 B 235 PHE GLU PHE TYR PRO LEU ALA ILE ASP ILE GLN ARG VAL SEQRES 14 B 235 VAL LYS ASP GLY MET ASP ILE THR PHE MET ARG LYS VAL SEQRES 15 B 235 LEU LYS GLN ARG TYR GLY THR LYS THR ALA ASP ASP TRP SEQRES 16 B 235 MET ILE SER GLU VAL THR ALA ILE GLN SER ALA VAL LYS SEQRES 17 B 235 VAL VAL ALA LYS LEU PRO TRP ALA LYS ALA GLY PHE THR SEQRES 18 B 235 ALA ALA ALA LYS ASN PHE LEU ALA LYS PHE ASN ILE SER SEQRES 19 B 235 VAL SEQRES 1 E 45 U U U U U U U U U U U U U SEQRES 2 E 45 U U U U U U U U U U U U U SEQRES 3 E 45 U U U U U U U U U U U U U SEQRES 4 E 45 U U U U U U FORMUL 6 HOH *62(H2 O) HELIX 1 1 ASN A 21 GLY A 34 1 14 HELIX 2 2 ASN A 38 SER A 59 1 22 HELIX 3 3 PRO A 81 ASN A 86 5 6 HELIX 4 4 LEU A 95 HIS A 112 1 18 HELIX 5 5 GLY A 113 VAL A 124 1 12 HELIX 6 6 ILE A 126 ALA A 131 1 6 HELIX 7 7 LYS A 135 ASP A 138 5 4 HELIX 8 8 GLY A 139 ALA A 145 1 7 HELIX 9 9 GLY A 149 LEU A 154 5 6 HELIX 10 10 PHE A 159 GLY A 173 1 15 HELIX 11 11 ASP A 175 GLN A 185 5 11 HELIX 12 12 THR A 191 GLU A 199 1 9 HELIX 13 13 GLU A 199 LYS A 212 1 14 HELIX 14 14 ALA A 223 LYS A 230 1 8 HELIX 15 15 ASN D 21 GLY D 34 1 14 HELIX 16 16 ASN D 38 SER D 59 1 22 HELIX 17 17 ASN D 80 ASN D 86 5 7 HELIX 18 18 THR D 94 HIS D 112 1 19 HELIX 19 19 GLY D 113 VAL D 124 1 12 HELIX 20 20 ILE D 126 ALA D 131 1 6 HELIX 21 21 LYS D 135 ASP D 138 5 4 HELIX 22 22 GLY D 139 ALA D 145 1 7 HELIX 23 23 GLY D 149 PHE D 153 5 5 HELIX 24 24 PHE D 159 GLY D 173 1 15 HELIX 25 25 ASP D 175 ARG D 180 5 6 HELIX 26 26 THR D 191 GLU D 199 1 9 HELIX 27 27 GLU D 199 LYS D 212 1 14 HELIX 28 28 ASN C 21 GLY C 34 1 14 HELIX 29 29 ASN C 38 ASN C 48 1 11 HELIX 30 30 ASN C 48 SER C 59 1 12 HELIX 31 31 ASN C 80 ASN C 86 5 7 HELIX 32 32 THR C 94 HIS C 112 1 19 HELIX 33 33 GLY C 113 VAL C 124 1 12 HELIX 34 34 ILE C 126 ALA C 131 1 6 HELIX 35 35 LYS C 135 ASP C 138 5 4 HELIX 36 36 GLY C 139 ALA C 145 1 7 HELIX 37 37 GLY C 149 LEU C 154 5 6 HELIX 38 38 PHE C 159 GLY C 173 1 15 HELIX 39 39 ASP C 175 THR C 177 5 3 HELIX 40 40 PHE C 178 LEU C 183 1 6 HELIX 41 41 THR C 191 GLU C 199 1 9 HELIX 42 42 GLU C 199 LYS C 212 1 14 HELIX 43 43 ALA C 223 ALA C 229 1 7 HELIX 44 44 ASN B 21 GLY B 34 1 14 HELIX 45 45 ASN B 38 SER B 59 1 22 HELIX 46 46 ASN B 80 ARG B 84 5 5 HELIX 47 47 THR B 94 HIS B 112 1 19 HELIX 48 48 GLY B 113 VAL B 124 1 12 HELIX 49 49 ILE B 126 ALA B 131 1 6 HELIX 50 50 LYS B 135 ASP B 138 5 4 HELIX 51 51 GLY B 139 ALA B 145 1 7 HELIX 52 52 GLY B 149 LEU B 154 5 6 HELIX 53 53 PHE B 159 GLY B 173 1 15 HELIX 54 54 ASP B 175 ARG B 180 5 6 HELIX 55 55 LYS B 181 GLN B 185 5 5 HELIX 56 56 THR B 191 GLU B 199 1 9 HELIX 57 57 GLU B 199 LYS B 212 1 14 SHEET 1 A 4 ILE A 93 THR A 94 0 SHEET 2 A 4 LEU A 71 VAL A 76 1 N VAL A 76 O ILE A 93 SHEET 3 A 4 GLU A 63 PHE A 68 -1 N PHE A 68 O LEU A 71 SHEET 4 A 4 TYR B 9 ASP B 10 1 O ASP B 10 N GLN A 67 SHEET 1 B 3 ILE D 8 ASP D 10 0 SHEET 2 B 3 GLU C 63 PHE C 68 1 O GLN C 67 N ASP D 10 SHEET 3 B 3 LEU C 71 VAL C 76 -1 O LEU C 71 N PHE C 68 SHEET 1 C 2 GLU D 63 PHE D 68 0 SHEET 2 C 2 LEU D 71 VAL D 76 -1 O LEU D 71 N PHE D 68 SHEET 1 D 2 GLU B 63 PHE B 68 0 SHEET 2 D 2 LEU B 71 VAL B 76 -1 O LEU B 71 N PHE B 68 CISPEP 1 ALA A 222 ALA A 223 0 17.53 CISPEP 2 ALA D 218 GLY D 219 0 -16.72 CISPEP 3 ALA D 224 LYS D 225 0 20.76 CISPEP 4 ALA C 222 ALA C 223 0 20.13 CISPEP 5 ALA B 216 LYS B 217 0 7.11 CRYST1 49.839 73.832 79.884 69.74 89.66 75.44 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020065 -0.005211 0.001859 0.00000 SCALE2 0.000000 0.013994 -0.005335 0.00000 SCALE3 0.000000 0.000000 0.013397 0.00000