data_4J1P # _entry.id 4J1P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4J1P pdb_00004j1p 10.2210/pdb4j1p/pdb RCSB RCSB077484 ? ? WWPDB D_1000077484 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4J3I _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4J1P _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-01 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stein, A.J.' 1 'White, A.' 2 'Suto, R.K.' 3 # _citation.id primary _citation.title 'RVX-208, an Inducer of ApoA-I in Humans, Is a BET Bromodomain Antagonist.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 8 _citation.page_first e83190 _citation.page_last e83190 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24391744 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0083190 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McLure, K.G.' 1 ? primary 'Gesner, E.M.' 2 ? primary 'Tsujikawa, L.' 3 ? primary 'Kharenko, O.A.' 4 ? primary 'Attwell, S.' 5 ? primary 'Campeau, E.' 6 ? primary 'Wasiak, S.' 7 ? primary 'Stein, A.' 8 ? primary 'White, A.' 9 ? primary 'Fontano, E.' 10 ? primary 'Suto, R.K.' 11 ? primary 'Wong, N.C.' 12 ? primary 'Wagner, G.S.' 13 ? primary 'Hansen, H.C.' 14 ? primary 'Young, P.R.' 15 ? # _cell.length_a 51.100 _cell.length_b 66.350 _cell.length_c 75.854 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4J1P _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 4J1P _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain containing 2, isoform CRA_a' 13375.410 1 ? ? ? ? 2 non-polymer syn '2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one' 370.399 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 254 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Bromodomain-containing protein 2, Putative uncharacterized protein DKFZp313H139' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_seq_one_letter_code_can ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLY n 1 4 LYS n 1 5 LEU n 1 6 SER n 1 7 GLU n 1 8 GLN n 1 9 LEU n 1 10 LYS n 1 11 HIS n 1 12 CYS n 1 13 ASN n 1 14 GLY n 1 15 ILE n 1 16 LEU n 1 17 LYS n 1 18 GLU n 1 19 LEU n 1 20 LEU n 1 21 SER n 1 22 LYS n 1 23 LYS n 1 24 HIS n 1 25 ALA n 1 26 ALA n 1 27 TYR n 1 28 ALA n 1 29 TRP n 1 30 PRO n 1 31 PHE n 1 32 TYR n 1 33 LYS n 1 34 PRO n 1 35 VAL n 1 36 ASP n 1 37 ALA n 1 38 SER n 1 39 ALA n 1 40 LEU n 1 41 GLY n 1 42 LEU n 1 43 HIS n 1 44 ASP n 1 45 TYR n 1 46 HIS n 1 47 ASP n 1 48 ILE n 1 49 ILE n 1 50 LYS n 1 51 HIS n 1 52 PRO n 1 53 MET n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 THR n 1 58 VAL n 1 59 LYS n 1 60 ARG n 1 61 LYS n 1 62 MET n 1 63 GLU n 1 64 ASN n 1 65 ARG n 1 66 ASP n 1 67 TYR n 1 68 ARG n 1 69 ASP n 1 70 ALA n 1 71 GLN n 1 72 GLU n 1 73 PHE n 1 74 ALA n 1 75 ALA n 1 76 ASP n 1 77 VAL n 1 78 ARG n 1 79 LEU n 1 80 MET n 1 81 PHE n 1 82 SER n 1 83 ASN n 1 84 CYS n 1 85 TYR n 1 86 LYS n 1 87 TYR n 1 88 ASN n 1 89 PRO n 1 90 PRO n 1 91 ASP n 1 92 HIS n 1 93 ASP n 1 94 VAL n 1 95 VAL n 1 96 ALA n 1 97 MET n 1 98 ALA n 1 99 ARG n 1 100 LYS n 1 101 LEU n 1 102 GLN n 1 103 ASP n 1 104 VAL n 1 105 PHE n 1 106 GLU n 1 107 PHE n 1 108 ARG n 1 109 TYR n 1 110 ALA n 1 111 LYS n 1 112 MET n 1 113 PRO n 1 114 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD2, DKFZp313H139, hCG_17503' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pJexpress401 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q658Y7_HUMAN _struct_ref.pdbx_db_accession Q658Y7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFS NCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _struct_ref.pdbx_align_begin 224 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4J1P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q658Y7 _struct_ref_seq.db_align_beg 224 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 335 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 344 _struct_ref_seq.pdbx_auth_seq_align_end 455 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4J1P SER A 1 ? UNP Q658Y7 ? ? 'expression tag' 342 1 1 4J1P MET A 2 ? UNP Q658Y7 ? ? 'expression tag' 343 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1K0 non-polymer . '2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one' ? 'C20 H22 N2 O5' 370.399 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4J1P _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '25% (w/v) PEG 1500, pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-04-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator SILICON _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 1.075 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 4J1P _reflns.d_resolution_high 1.080 _reflns.d_resolution_low 50.000 _reflns.number_obs 55428 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_netI_over_sigmaI 10.300 _reflns.pdbx_chi_squared 1.105 _reflns.pdbx_redundancy 4.600 _reflns.percent_possible_obs 99.600 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 55667 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.080 1.120 ? ? ? 0.388 ? ? 0.879 4.500 ? 5506 99.900 1 1 1.120 1.160 ? ? ? 0.232 ? ? 0.865 4.500 ? 5502 100.000 2 1 1.160 1.220 ? ? ? 0.187 ? ? 0.973 4.500 ? 5490 99.900 3 1 1.220 1.280 ? ? ? 0.143 ? ? 1.032 4.500 ? 5531 99.900 4 1 1.280 1.360 ? ? ? 0.107 ? ? 0.968 4.600 ? 5517 100.000 5 1 1.360 1.470 ? ? ? 0.086 ? ? 1.005 4.700 ? 5539 100.000 6 1 1.470 1.610 ? ? ? 0.075 ? ? 1.369 4.700 ? 5567 100.000 7 1 1.610 1.850 ? ? ? 0.057 ? ? 1.371 4.700 ? 5557 100.000 8 1 1.850 2.330 ? ? ? 0.039 ? ? 1.249 4.700 ? 5627 99.900 9 1 2.330 50.000 ? ? ? 0.030 ? ? 1.288 4.600 ? 5592 96.200 10 1 # _refine.entry_id 4J1P _refine.ls_d_res_high 1.0800 _refine.ls_d_res_low 19.5600 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.2800 _refine.ls_number_reflns_obs 55278 _refine.ls_number_reflns_all 55679 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1295 _refine.ls_R_factor_R_work 0.1279 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1592 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 2813 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.8182 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.1400 _refine.aniso_B[2][2] -0.5200 _refine.aniso_B[3][3] 0.6500 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9780 _refine.correlation_coeff_Fo_to_Fc_free 0.9680 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0250 _refine.pdbx_overall_ESU_R_Free 0.0280 _refine.overall_SU_ML 0.0150 _refine.overall_SU_B 0.6650 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3ONI' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 84.490 _refine.B_iso_min 6.720 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.490 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 938 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 254 _refine_hist.number_atoms_total 1223 _refine_hist.d_res_high 1.0800 _refine_hist.d_res_low 19.5600 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1080 0.027 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1036 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1468 2.402 1.993 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2406 1.202 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 136 6.710 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 52 35.027 23.462 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 204 13.204 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 7 28.880 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 144 0.145 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1216 0.018 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 256 0.004 0.020 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2112 7.209 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 29 28.105 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 2302 10.952 5.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.08 _refine_ls_shell.d_res_low 1.1070 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.4300 _refine_ls_shell.number_reflns_R_work 3817 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3140 _refine_ls_shell.R_factor_R_free 0.3040 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 203 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 4020 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4J1P _struct.title 'X-ray crystal structure of bromodomain 2 of human brd2 in complex with rvx208 to 1.08 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4J1P _struct_keywords.text 'BRD2, BROMODOMAIN, SIGNALING PROTEIN-INHIBITOR COMPLEX' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL UNIT MAY BE DIMERIC, BUT PRESENTLY THIS IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 2 ? SER A 21 ? MET A 343 SER A 362 1 ? 20 HELX_P HELX_P2 2 HIS A 24 ? TRP A 29 ? HIS A 365 TRP A 370 1 ? 6 HELX_P HELX_P3 3 PRO A 30 ? TYR A 32 ? PRO A 371 TYR A 373 5 ? 3 HELX_P HELX_P4 4 ASP A 36 ? GLY A 41 ? ASP A 377 GLY A 382 1 ? 6 HELX_P HELX_P5 5 ASP A 44 ? ILE A 49 ? ASP A 385 ILE A 390 1 ? 6 HELX_P HELX_P6 6 ASP A 54 ? ASN A 64 ? ASP A 395 ASN A 405 1 ? 11 HELX_P HELX_P7 7 ASP A 69 ? ASN A 88 ? ASP A 410 ASN A 429 1 ? 20 HELX_P HELX_P8 8 HIS A 92 ? LYS A 111 ? HIS A 433 LYS A 452 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 1K0 501 ? 12 'BINDING SITE FOR RESIDUE 1K0 A 501' AC2 Software A EDO 502 ? 5 'BINDING SITE FOR RESIDUE EDO A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 PRO A 30 ? PRO A 371 . ? 1_555 ? 2 AC1 12 PHE A 31 ? PHE A 372 . ? 1_555 ? 3 AC1 12 VAL A 35 ? VAL A 376 . ? 1_555 ? 4 AC1 12 LEU A 40 ? LEU A 381 . ? 1_555 ? 5 AC1 12 ASN A 88 ? ASN A 429 . ? 1_555 ? 6 AC1 12 HIS A 92 ? HIS A 433 . ? 1_555 ? 7 AC1 12 HOH D . ? HOH A 604 . ? 1_555 ? 8 AC1 12 HOH D . ? HOH A 644 . ? 1_555 ? 9 AC1 12 HOH D . ? HOH A 754 . ? 1_555 ? 10 AC1 12 HOH D . ? HOH A 786 . ? 1_555 ? 11 AC1 12 HOH D . ? HOH A 793 . ? 1_555 ? 12 AC1 12 HOH D . ? HOH A 850 . ? 1_555 ? 13 AC2 5 HOH D . ? HOH A 614 . ? 1_555 ? 14 AC2 5 HOH D . ? HOH A 628 . ? 1_555 ? 15 AC2 5 HOH D . ? HOH A 670 . ? 1_555 ? 16 AC2 5 HOH D . ? HOH A 726 . ? 1_555 ? 17 AC2 5 HOH D . ? HOH A 771 . ? 1_555 ? # _atom_sites.entry_id 4J1P _atom_sites.fract_transf_matrix[1][1] 0.019569 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015072 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013183 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 342 342 SER SER A . n A 1 2 MET 2 343 343 MET MET A . n A 1 3 GLY 3 344 344 GLY GLY A . n A 1 4 LYS 4 345 345 LYS LYS A . n A 1 5 LEU 5 346 346 LEU LEU A . n A 1 6 SER 6 347 347 SER SER A . n A 1 7 GLU 7 348 348 GLU GLU A . n A 1 8 GLN 8 349 349 GLN GLN A . n A 1 9 LEU 9 350 350 LEU LEU A . n A 1 10 LYS 10 351 351 LYS LYS A . n A 1 11 HIS 11 352 352 HIS HIS A . n A 1 12 CYS 12 353 353 CYS CYS A . n A 1 13 ASN 13 354 354 ASN ASN A . n A 1 14 GLY 14 355 355 GLY GLY A . n A 1 15 ILE 15 356 356 ILE ILE A . n A 1 16 LEU 16 357 357 LEU LEU A . n A 1 17 LYS 17 358 358 LYS LYS A . n A 1 18 GLU 18 359 359 GLU GLU A . n A 1 19 LEU 19 360 360 LEU LEU A . n A 1 20 LEU 20 361 361 LEU LEU A . n A 1 21 SER 21 362 362 SER SER A . n A 1 22 LYS 22 363 363 LYS LYS A . n A 1 23 LYS 23 364 364 LYS LYS A . n A 1 24 HIS 24 365 365 HIS HIS A . n A 1 25 ALA 25 366 366 ALA ALA A . n A 1 26 ALA 26 367 367 ALA ALA A . n A 1 27 TYR 27 368 368 TYR TYR A . n A 1 28 ALA 28 369 369 ALA ALA A . n A 1 29 TRP 29 370 370 TRP TRP A . n A 1 30 PRO 30 371 371 PRO PRO A . n A 1 31 PHE 31 372 372 PHE PHE A . n A 1 32 TYR 32 373 373 TYR TYR A . n A 1 33 LYS 33 374 374 LYS LYS A . n A 1 34 PRO 34 375 375 PRO PRO A . n A 1 35 VAL 35 376 376 VAL VAL A . n A 1 36 ASP 36 377 377 ASP ASP A . n A 1 37 ALA 37 378 378 ALA ALA A . n A 1 38 SER 38 379 379 SER SER A . n A 1 39 ALA 39 380 380 ALA ALA A . n A 1 40 LEU 40 381 381 LEU LEU A . n A 1 41 GLY 41 382 382 GLY GLY A . n A 1 42 LEU 42 383 383 LEU LEU A . n A 1 43 HIS 43 384 384 HIS HIS A . n A 1 44 ASP 44 385 385 ASP ASP A . n A 1 45 TYR 45 386 386 TYR TYR A . n A 1 46 HIS 46 387 387 HIS HIS A . n A 1 47 ASP 47 388 388 ASP ASP A . n A 1 48 ILE 48 389 389 ILE ILE A . n A 1 49 ILE 49 390 390 ILE ILE A . n A 1 50 LYS 50 391 391 LYS LYS A . n A 1 51 HIS 51 392 392 HIS HIS A . n A 1 52 PRO 52 393 393 PRO PRO A . n A 1 53 MET 53 394 394 MET MET A . n A 1 54 ASP 54 395 395 ASP ASP A . n A 1 55 LEU 55 396 396 LEU LEU A . n A 1 56 SER 56 397 397 SER SER A . n A 1 57 THR 57 398 398 THR THR A . n A 1 58 VAL 58 399 399 VAL VAL A . n A 1 59 LYS 59 400 400 LYS LYS A . n A 1 60 ARG 60 401 401 ARG ARG A . n A 1 61 LYS 61 402 402 LYS LYS A . n A 1 62 MET 62 403 403 MET MET A . n A 1 63 GLU 63 404 404 GLU GLU A . n A 1 64 ASN 64 405 405 ASN ASN A . n A 1 65 ARG 65 406 406 ARG ARG A . n A 1 66 ASP 66 407 407 ASP ASP A . n A 1 67 TYR 67 408 408 TYR TYR A . n A 1 68 ARG 68 409 409 ARG ARG A . n A 1 69 ASP 69 410 410 ASP ASP A . n A 1 70 ALA 70 411 411 ALA ALA A . n A 1 71 GLN 71 412 412 GLN GLN A . n A 1 72 GLU 72 413 413 GLU GLU A . n A 1 73 PHE 73 414 414 PHE PHE A . n A 1 74 ALA 74 415 415 ALA ALA A . n A 1 75 ALA 75 416 416 ALA ALA A . n A 1 76 ASP 76 417 417 ASP ASP A . n A 1 77 VAL 77 418 418 VAL VAL A . n A 1 78 ARG 78 419 419 ARG ARG A . n A 1 79 LEU 79 420 420 LEU LEU A . n A 1 80 MET 80 421 421 MET MET A . n A 1 81 PHE 81 422 422 PHE PHE A . n A 1 82 SER 82 423 423 SER SER A . n A 1 83 ASN 83 424 424 ASN ASN A . n A 1 84 CYS 84 425 425 CYS CYS A . n A 1 85 TYR 85 426 426 TYR TYR A . n A 1 86 LYS 86 427 427 LYS LYS A . n A 1 87 TYR 87 428 428 TYR TYR A . n A 1 88 ASN 88 429 429 ASN ASN A . n A 1 89 PRO 89 430 430 PRO PRO A . n A 1 90 PRO 90 431 431 PRO PRO A . n A 1 91 ASP 91 432 432 ASP ASP A . n A 1 92 HIS 92 433 433 HIS HIS A . n A 1 93 ASP 93 434 434 ASP ASP A . n A 1 94 VAL 94 435 435 VAL VAL A . n A 1 95 VAL 95 436 436 VAL VAL A . n A 1 96 ALA 96 437 437 ALA ALA A . n A 1 97 MET 97 438 438 MET MET A . n A 1 98 ALA 98 439 439 ALA ALA A . n A 1 99 ARG 99 440 440 ARG ARG A . n A 1 100 LYS 100 441 441 LYS LYS A . n A 1 101 LEU 101 442 442 LEU LEU A . n A 1 102 GLN 102 443 443 GLN GLN A . n A 1 103 ASP 103 444 444 ASP ASP A . n A 1 104 VAL 104 445 445 VAL VAL A . n A 1 105 PHE 105 446 446 PHE PHE A . n A 1 106 GLU 106 447 447 GLU GLU A . n A 1 107 PHE 107 448 448 PHE PHE A . n A 1 108 ARG 108 449 449 ARG ARG A . n A 1 109 TYR 109 450 450 TYR TYR A . n A 1 110 ALA 110 451 451 ALA ALA A . n A 1 111 LYS 111 452 452 LYS LYS A . n A 1 112 MET 112 453 453 MET MET A . n A 1 113 PRO 113 454 454 PRO PRO A . n A 1 114 ASP 114 455 455 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1K0 1 501 1 1K0 Z08 A . C 3 EDO 1 502 2 EDO EDO A . D 4 HOH 1 601 1 HOH HOH A . D 4 HOH 2 602 2 HOH HOH A . D 4 HOH 3 603 3 HOH HOH A . D 4 HOH 4 604 4 HOH HOH A . D 4 HOH 5 605 5 HOH HOH A . D 4 HOH 6 606 6 HOH HOH A . D 4 HOH 7 607 7 HOH HOH A . D 4 HOH 8 608 8 HOH HOH A . D 4 HOH 9 609 9 HOH HOH A . D 4 HOH 10 610 10 HOH HOH A . D 4 HOH 11 611 11 HOH HOH A . D 4 HOH 12 612 12 HOH HOH A . D 4 HOH 13 613 13 HOH HOH A . D 4 HOH 14 614 14 HOH HOH A . D 4 HOH 15 615 15 HOH HOH A . D 4 HOH 16 616 16 HOH HOH A . D 4 HOH 17 617 17 HOH HOH A . D 4 HOH 18 618 18 HOH HOH A . D 4 HOH 19 619 19 HOH HOH A . D 4 HOH 20 620 20 HOH HOH A . D 4 HOH 21 621 21 HOH HOH A . D 4 HOH 22 622 22 HOH HOH A . D 4 HOH 23 623 23 HOH HOH A . D 4 HOH 24 624 24 HOH HOH A . D 4 HOH 25 625 25 HOH HOH A . D 4 HOH 26 626 26 HOH HOH A . D 4 HOH 27 627 27 HOH HOH A . D 4 HOH 28 628 28 HOH HOH A . D 4 HOH 29 629 29 HOH HOH A . D 4 HOH 30 630 30 HOH HOH A . D 4 HOH 31 631 31 HOH HOH A . D 4 HOH 32 632 32 HOH HOH A . D 4 HOH 33 633 33 HOH HOH A . D 4 HOH 34 634 34 HOH HOH A . D 4 HOH 35 635 35 HOH HOH A . D 4 HOH 36 636 36 HOH HOH A . D 4 HOH 37 637 37 HOH HOH A . D 4 HOH 38 638 38 HOH HOH A . D 4 HOH 39 639 39 HOH HOH A . D 4 HOH 40 640 40 HOH HOH A . D 4 HOH 41 641 41 HOH HOH A . D 4 HOH 42 642 42 HOH HOH A . D 4 HOH 43 643 43 HOH HOH A . D 4 HOH 44 644 44 HOH HOH A . D 4 HOH 45 645 45 HOH HOH A . D 4 HOH 46 646 46 HOH HOH A . D 4 HOH 47 647 47 HOH HOH A . D 4 HOH 48 648 48 HOH HOH A . D 4 HOH 49 649 49 HOH HOH A . D 4 HOH 50 650 50 HOH HOH A . D 4 HOH 51 651 51 HOH HOH A . D 4 HOH 52 652 52 HOH HOH A . D 4 HOH 53 653 53 HOH HOH A . D 4 HOH 54 654 54 HOH HOH A . D 4 HOH 55 655 55 HOH HOH A . D 4 HOH 56 656 56 HOH HOH A . D 4 HOH 57 657 57 HOH HOH A . D 4 HOH 58 658 58 HOH HOH A . D 4 HOH 59 659 59 HOH HOH A . D 4 HOH 60 660 60 HOH HOH A . D 4 HOH 61 661 61 HOH HOH A . D 4 HOH 62 662 62 HOH HOH A . D 4 HOH 63 663 63 HOH HOH A . D 4 HOH 64 664 64 HOH HOH A . D 4 HOH 65 665 65 HOH HOH A . D 4 HOH 66 666 66 HOH HOH A . D 4 HOH 67 667 67 HOH HOH A . D 4 HOH 68 668 68 HOH HOH A . D 4 HOH 69 669 69 HOH HOH A . D 4 HOH 70 670 70 HOH HOH A . D 4 HOH 71 671 71 HOH HOH A . D 4 HOH 72 672 72 HOH HOH A . D 4 HOH 73 673 73 HOH HOH A . D 4 HOH 74 674 74 HOH HOH A . D 4 HOH 75 675 75 HOH HOH A . D 4 HOH 76 676 76 HOH HOH A . D 4 HOH 77 677 77 HOH HOH A . D 4 HOH 78 678 78 HOH HOH A . D 4 HOH 79 679 79 HOH HOH A . D 4 HOH 80 680 80 HOH HOH A . D 4 HOH 81 681 81 HOH HOH A . D 4 HOH 82 682 82 HOH HOH A . D 4 HOH 83 683 83 HOH HOH A . D 4 HOH 84 684 84 HOH HOH A . D 4 HOH 85 685 85 HOH HOH A . D 4 HOH 86 686 86 HOH HOH A . D 4 HOH 87 687 87 HOH HOH A . D 4 HOH 88 688 88 HOH HOH A . D 4 HOH 89 689 89 HOH HOH A . D 4 HOH 90 690 90 HOH HOH A . D 4 HOH 91 691 91 HOH HOH A . D 4 HOH 92 692 92 HOH HOH A . D 4 HOH 93 693 93 HOH HOH A . D 4 HOH 94 694 94 HOH HOH A . D 4 HOH 95 695 95 HOH HOH A . D 4 HOH 96 696 96 HOH HOH A . D 4 HOH 97 697 97 HOH HOH A . D 4 HOH 98 698 98 HOH HOH A . D 4 HOH 99 699 99 HOH HOH A . D 4 HOH 100 700 100 HOH HOH A . D 4 HOH 101 701 101 HOH HOH A . D 4 HOH 102 702 102 HOH HOH A . D 4 HOH 103 703 103 HOH HOH A . D 4 HOH 104 704 104 HOH HOH A . D 4 HOH 105 705 105 HOH HOH A . D 4 HOH 106 706 106 HOH HOH A . D 4 HOH 107 707 107 HOH HOH A . D 4 HOH 108 708 108 HOH HOH A . D 4 HOH 109 709 109 HOH HOH A . D 4 HOH 110 710 110 HOH HOH A . D 4 HOH 111 711 111 HOH HOH A . D 4 HOH 112 712 112 HOH HOH A . D 4 HOH 113 713 113 HOH HOH A . D 4 HOH 114 714 114 HOH HOH A . D 4 HOH 115 715 115 HOH HOH A . D 4 HOH 116 716 116 HOH HOH A . D 4 HOH 117 717 117 HOH HOH A . D 4 HOH 118 718 118 HOH HOH A . D 4 HOH 119 719 119 HOH HOH A . D 4 HOH 120 720 120 HOH HOH A . D 4 HOH 121 721 121 HOH HOH A . D 4 HOH 122 722 122 HOH HOH A . D 4 HOH 123 723 123 HOH HOH A . D 4 HOH 124 724 124 HOH HOH A . D 4 HOH 125 725 125 HOH HOH A . D 4 HOH 126 726 126 HOH HOH A . D 4 HOH 127 727 127 HOH HOH A . D 4 HOH 128 728 128 HOH HOH A . D 4 HOH 129 729 129 HOH HOH A . D 4 HOH 130 730 130 HOH HOH A . D 4 HOH 131 731 131 HOH HOH A . D 4 HOH 132 732 132 HOH HOH A . D 4 HOH 133 733 133 HOH HOH A . D 4 HOH 134 734 134 HOH HOH A . D 4 HOH 135 735 135 HOH HOH A . D 4 HOH 136 736 136 HOH HOH A . D 4 HOH 137 737 137 HOH HOH A . D 4 HOH 138 738 138 HOH HOH A . D 4 HOH 139 739 139 HOH HOH A . D 4 HOH 140 740 140 HOH HOH A . D 4 HOH 141 741 141 HOH HOH A . D 4 HOH 142 742 142 HOH HOH A . D 4 HOH 143 743 143 HOH HOH A . D 4 HOH 144 744 144 HOH HOH A . D 4 HOH 145 745 145 HOH HOH A . D 4 HOH 146 746 146 HOH HOH A . D 4 HOH 147 747 147 HOH HOH A . D 4 HOH 148 748 148 HOH HOH A . D 4 HOH 149 749 149 HOH HOH A . D 4 HOH 150 750 150 HOH HOH A . D 4 HOH 151 751 151 HOH HOH A . D 4 HOH 152 752 152 HOH HOH A . D 4 HOH 153 753 153 HOH HOH A . D 4 HOH 154 754 154 HOH HOH A . D 4 HOH 155 755 155 HOH HOH A . D 4 HOH 156 756 156 HOH HOH A . D 4 HOH 157 757 157 HOH HOH A . D 4 HOH 158 758 158 HOH HOH A . D 4 HOH 159 759 159 HOH HOH A . D 4 HOH 160 760 160 HOH HOH A . D 4 HOH 161 761 161 HOH HOH A . D 4 HOH 162 762 162 HOH HOH A . D 4 HOH 163 763 163 HOH HOH A . D 4 HOH 164 764 164 HOH HOH A . D 4 HOH 165 765 165 HOH HOH A . D 4 HOH 166 766 166 HOH HOH A . D 4 HOH 167 767 167 HOH HOH A . D 4 HOH 168 768 168 HOH HOH A . D 4 HOH 169 769 169 HOH HOH A . D 4 HOH 170 770 170 HOH HOH A . D 4 HOH 171 771 171 HOH HOH A . D 4 HOH 172 772 172 HOH HOH A . D 4 HOH 173 773 173 HOH HOH A . D 4 HOH 174 774 174 HOH HOH A . D 4 HOH 175 775 175 HOH HOH A . D 4 HOH 176 776 176 HOH HOH A . D 4 HOH 177 777 177 HOH HOH A . D 4 HOH 178 778 178 HOH HOH A . D 4 HOH 179 779 179 HOH HOH A . D 4 HOH 180 780 180 HOH HOH A . D 4 HOH 181 781 181 HOH HOH A . D 4 HOH 182 782 182 HOH HOH A . D 4 HOH 183 783 183 HOH HOH A . D 4 HOH 184 784 184 HOH HOH A . D 4 HOH 185 785 185 HOH HOH A . D 4 HOH 186 786 186 HOH HOH A . D 4 HOH 187 787 187 HOH HOH A . D 4 HOH 188 788 188 HOH HOH A . D 4 HOH 189 789 189 HOH HOH A . D 4 HOH 190 790 190 HOH HOH A . D 4 HOH 191 791 191 HOH HOH A . D 4 HOH 192 792 192 HOH HOH A . D 4 HOH 193 793 193 HOH HOH A . D 4 HOH 194 794 194 HOH HOH A . D 4 HOH 195 795 195 HOH HOH A . D 4 HOH 196 796 196 HOH HOH A . D 4 HOH 197 797 197 HOH HOH A . D 4 HOH 198 798 198 HOH HOH A . D 4 HOH 199 799 199 HOH HOH A . D 4 HOH 200 800 200 HOH HOH A . D 4 HOH 201 801 201 HOH HOH A . D 4 HOH 202 802 202 HOH HOH A . D 4 HOH 203 803 203 HOH HOH A . D 4 HOH 204 804 204 HOH HOH A . D 4 HOH 205 805 205 HOH HOH A . D 4 HOH 206 806 206 HOH HOH A . D 4 HOH 207 807 207 HOH HOH A . D 4 HOH 208 808 208 HOH HOH A . D 4 HOH 209 809 209 HOH HOH A . D 4 HOH 210 810 210 HOH HOH A . D 4 HOH 211 811 211 HOH HOH A . D 4 HOH 212 812 212 HOH HOH A . D 4 HOH 213 813 213 HOH HOH A . D 4 HOH 214 814 214 HOH HOH A . D 4 HOH 215 815 215 HOH HOH A . D 4 HOH 216 816 216 HOH HOH A . D 4 HOH 217 817 217 HOH HOH A . D 4 HOH 218 818 218 HOH HOH A . D 4 HOH 219 819 219 HOH HOH A . D 4 HOH 220 820 220 HOH HOH A . D 4 HOH 221 821 221 HOH HOH A . D 4 HOH 222 822 222 HOH HOH A . D 4 HOH 223 823 223 HOH HOH A . D 4 HOH 224 824 224 HOH HOH A . D 4 HOH 225 825 225 HOH HOH A . D 4 HOH 226 826 226 HOH HOH A . D 4 HOH 227 827 227 HOH HOH A . D 4 HOH 228 828 228 HOH HOH A . D 4 HOH 229 829 229 HOH HOH A . D 4 HOH 230 830 230 HOH HOH A . D 4 HOH 231 831 231 HOH HOH A . D 4 HOH 232 832 232 HOH HOH A . D 4 HOH 233 833 233 HOH HOH A . D 4 HOH 234 834 234 HOH HOH A . D 4 HOH 235 835 235 HOH HOH A . D 4 HOH 236 836 236 HOH HOH A . D 4 HOH 237 837 237 HOH HOH A . D 4 HOH 238 838 238 HOH HOH A . D 4 HOH 239 839 239 HOH HOH A . D 4 HOH 240 840 240 HOH HOH A . D 4 HOH 241 841 241 HOH HOH A . D 4 HOH 242 842 242 HOH HOH A . D 4 HOH 243 843 243 HOH HOH A . D 4 HOH 244 844 244 HOH HOH A . D 4 HOH 245 845 245 HOH HOH A . D 4 HOH 246 846 246 HOH HOH A . D 4 HOH 247 847 247 HOH HOH A . D 4 HOH 248 848 248 HOH HOH A . D 4 HOH 249 849 249 HOH HOH A . D 4 HOH 250 850 250 HOH HOH A . D 4 HOH 251 851 251 HOH HOH A . D 4 HOH 252 852 252 HOH HOH A . D 4 HOH 253 853 253 HOH HOH A . D 4 HOH 254 854 254 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-15 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_ref_seq_dif 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC 5.7.0029 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 651 ? ? O A HOH 673 ? ? 1.80 2 1 O A HOH 667 ? ? O A HOH 685 ? ? 1.95 3 1 OD2 A ASP 444 ? D O A HOH 694 ? ? 2.17 4 1 CE A MET 403 ? A O A HOH 740 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N A SER 342 ? ? 1_555 O A HOH 786 ? ? 7_544 1.92 2 1 CE2 A PHE 448 ? D 1_555 O A HOH 841 ? ? 3_554 2.13 3 1 O A HOH 803 ? ? 1_555 O A HOH 806 ? ? 3_554 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N A SER 342 ? ? CA A SER 342 ? ? 1.596 1.459 0.137 0.020 N 2 1 N A GLY 344 ? ? CA A GLY 344 ? ? 1.317 1.456 -0.139 0.015 N 3 1 CD A GLU 348 ? B OE1 A GLU 348 ? B 1.343 1.252 0.091 0.011 N 4 1 CZ A ARG 409 ? ? NH1 A ARG 409 ? ? 1.415 1.326 0.089 0.013 N 5 1 CD A ARG 440 ? D NE A ARG 440 ? D 1.569 1.460 0.109 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD A LYS 374 ? B CE A LYS 374 ? B NZ A LYS 374 ? B 96.10 111.70 -15.60 2.30 N 2 1 NE A ARG 401 ? ? CZ A ARG 401 ? ? NH2 A ARG 401 ? ? 117.16 120.30 -3.14 0.50 N 3 1 CG A MET 403 ? B SD A MET 403 ? B CE A MET 403 ? B 81.01 100.20 -19.19 1.60 N 4 1 NE A ARG 440 ? D CZ A ARG 440 ? D NH1 A ARG 440 ? D 114.91 120.30 -5.39 0.50 N 5 1 NE A ARG 440 ? D CZ A ARG 440 ? D NH2 A ARG 440 ? D 123.84 120.30 3.54 0.50 N 6 1 CB A PHE 448 ? C CG A PHE 448 ? C CD2 A PHE 448 ? C 116.38 120.80 -4.42 0.70 N 7 1 CB A PHE 448 ? C CG A PHE 448 ? C CD1 A PHE 448 ? C 126.25 120.80 5.45 0.70 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id MET _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 343 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -108.29 _pdbx_validate_torsion.psi 67.16 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 MET _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 343 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLY _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 344 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -129.32 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id MET _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 343 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 20.82 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 449 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.110 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1K0 O1 O N N 1 1K0 C1 C N N 2 1K0 C2 C Y N 3 1K0 C3 C Y N 4 1K0 C4 C Y N 5 1K0 N1 N N N 6 1K0 C5 C N N 7 1K0 O2 O N N 8 1K0 C6 C Y N 9 1K0 O3 O N N 10 1K0 N2 N N N 11 1K0 C7 C N N 12 1K0 C8 C N N 13 1K0 O4 O N N 14 1K0 O5 O N N 15 1K0 C9 C Y N 16 1K0 C18 C Y N 17 1K0 C16 C Y N 18 1K0 C17 C N N 19 1K0 C13 C Y N 20 1K0 C14 C N N 21 1K0 C15 C N N 22 1K0 C11 C Y N 23 1K0 C12 C N N 24 1K0 C10 C Y N 25 1K0 C19 C Y N 26 1K0 C20 C Y N 27 1K0 H1 H N N 28 1K0 H2 H N N 29 1K0 H3 H N N 30 1K0 H4 H N N 31 1K0 H5 H N N 32 1K0 H6 H N N 33 1K0 H7 H N N 34 1K0 H8 H N N 35 1K0 H9 H N N 36 1K0 H10 H N N 37 1K0 H11 H N N 38 1K0 H12 H N N 39 1K0 H13 H N N 40 1K0 H14 H N N 41 1K0 H15 H N N 42 1K0 H16 H N N 43 1K0 H17 H N N 44 1K0 H18 H N N 45 1K0 H19 H N N 46 1K0 H20 H N N 47 1K0 H21 H N N 48 1K0 H22 H N N 49 ALA N N N N 50 ALA CA C N S 51 ALA C C N N 52 ALA O O N N 53 ALA CB C N N 54 ALA OXT O N N 55 ALA H H N N 56 ALA H2 H N N 57 ALA HA H N N 58 ALA HB1 H N N 59 ALA HB2 H N N 60 ALA HB3 H N N 61 ALA HXT H N N 62 ARG N N N N 63 ARG CA C N S 64 ARG C C N N 65 ARG O O N N 66 ARG CB C N N 67 ARG CG C N N 68 ARG CD C N N 69 ARG NE N N N 70 ARG CZ C N N 71 ARG NH1 N N N 72 ARG NH2 N N N 73 ARG OXT O N N 74 ARG H H N N 75 ARG H2 H N N 76 ARG HA H N N 77 ARG HB2 H N N 78 ARG HB3 H N N 79 ARG HG2 H N N 80 ARG HG3 H N N 81 ARG HD2 H N N 82 ARG HD3 H N N 83 ARG HE H N N 84 ARG HH11 H N N 85 ARG HH12 H N N 86 ARG HH21 H N N 87 ARG HH22 H N N 88 ARG HXT H N N 89 ASN N N N N 90 ASN CA C N S 91 ASN C C N N 92 ASN O O N N 93 ASN CB C N N 94 ASN CG C N N 95 ASN OD1 O N N 96 ASN ND2 N N N 97 ASN OXT O N N 98 ASN H H N N 99 ASN H2 H N N 100 ASN HA H N N 101 ASN HB2 H N N 102 ASN HB3 H N N 103 ASN HD21 H N N 104 ASN HD22 H N N 105 ASN HXT H N N 106 ASP N N N N 107 ASP CA C N S 108 ASP C C N N 109 ASP O O N N 110 ASP CB C N N 111 ASP CG C N N 112 ASP OD1 O N N 113 ASP OD2 O N N 114 ASP OXT O N N 115 ASP H H N N 116 ASP H2 H N N 117 ASP HA H N N 118 ASP HB2 H N N 119 ASP HB3 H N N 120 ASP HD2 H N N 121 ASP HXT H N N 122 CYS N N N N 123 CYS CA C N R 124 CYS C C N N 125 CYS O O N N 126 CYS CB C N N 127 CYS SG S N N 128 CYS OXT O N N 129 CYS H H N N 130 CYS H2 H N N 131 CYS HA H N N 132 CYS HB2 H N N 133 CYS HB3 H N N 134 CYS HG H N N 135 CYS HXT H N N 136 EDO C1 C N N 137 EDO O1 O N N 138 EDO C2 C N N 139 EDO O2 O N N 140 EDO H11 H N N 141 EDO H12 H N N 142 EDO HO1 H N N 143 EDO H21 H N N 144 EDO H22 H N N 145 EDO HO2 H N N 146 GLN N N N N 147 GLN CA C N S 148 GLN C C N N 149 GLN O O N N 150 GLN CB C N N 151 GLN CG C N N 152 GLN CD C N N 153 GLN OE1 O N N 154 GLN NE2 N N N 155 GLN OXT O N N 156 GLN H H N N 157 GLN H2 H N N 158 GLN HA H N N 159 GLN HB2 H N N 160 GLN HB3 H N N 161 GLN HG2 H N N 162 GLN HG3 H N N 163 GLN HE21 H N N 164 GLN HE22 H N N 165 GLN HXT H N N 166 GLU N N N N 167 GLU CA C N S 168 GLU C C N N 169 GLU O O N N 170 GLU CB C N N 171 GLU CG C N N 172 GLU CD C N N 173 GLU OE1 O N N 174 GLU OE2 O N N 175 GLU OXT O N N 176 GLU H H N N 177 GLU H2 H N N 178 GLU HA H N N 179 GLU HB2 H N N 180 GLU HB3 H N N 181 GLU HG2 H N N 182 GLU HG3 H N N 183 GLU HE2 H N N 184 GLU HXT H N N 185 GLY N N N N 186 GLY CA C N N 187 GLY C C N N 188 GLY O O N N 189 GLY OXT O N N 190 GLY H H N N 191 GLY H2 H N N 192 GLY HA2 H N N 193 GLY HA3 H N N 194 GLY HXT H N N 195 HIS N N N N 196 HIS CA C N S 197 HIS C C N N 198 HIS O O N N 199 HIS CB C N N 200 HIS CG C Y N 201 HIS ND1 N Y N 202 HIS CD2 C Y N 203 HIS CE1 C Y N 204 HIS NE2 N Y N 205 HIS OXT O N N 206 HIS H H N N 207 HIS H2 H N N 208 HIS HA H N N 209 HIS HB2 H N N 210 HIS HB3 H N N 211 HIS HD1 H N N 212 HIS HD2 H N N 213 HIS HE1 H N N 214 HIS HE2 H N N 215 HIS HXT H N N 216 HOH O O N N 217 HOH H1 H N N 218 HOH H2 H N N 219 ILE N N N N 220 ILE CA C N S 221 ILE C C N N 222 ILE O O N N 223 ILE CB C N S 224 ILE CG1 C N N 225 ILE CG2 C N N 226 ILE CD1 C N N 227 ILE OXT O N N 228 ILE H H N N 229 ILE H2 H N N 230 ILE HA H N N 231 ILE HB H N N 232 ILE HG12 H N N 233 ILE HG13 H N N 234 ILE HG21 H N N 235 ILE HG22 H N N 236 ILE HG23 H N N 237 ILE HD11 H N N 238 ILE HD12 H N N 239 ILE HD13 H N N 240 ILE HXT H N N 241 LEU N N N N 242 LEU CA C N S 243 LEU C C N N 244 LEU O O N N 245 LEU CB C N N 246 LEU CG C N N 247 LEU CD1 C N N 248 LEU CD2 C N N 249 LEU OXT O N N 250 LEU H H N N 251 LEU H2 H N N 252 LEU HA H N N 253 LEU HB2 H N N 254 LEU HB3 H N N 255 LEU HG H N N 256 LEU HD11 H N N 257 LEU HD12 H N N 258 LEU HD13 H N N 259 LEU HD21 H N N 260 LEU HD22 H N N 261 LEU HD23 H N N 262 LEU HXT H N N 263 LYS N N N N 264 LYS CA C N S 265 LYS C C N N 266 LYS O O N N 267 LYS CB C N N 268 LYS CG C N N 269 LYS CD C N N 270 LYS CE C N N 271 LYS NZ N N N 272 LYS OXT O N N 273 LYS H H N N 274 LYS H2 H N N 275 LYS HA H N N 276 LYS HB2 H N N 277 LYS HB3 H N N 278 LYS HG2 H N N 279 LYS HG3 H N N 280 LYS HD2 H N N 281 LYS HD3 H N N 282 LYS HE2 H N N 283 LYS HE3 H N N 284 LYS HZ1 H N N 285 LYS HZ2 H N N 286 LYS HZ3 H N N 287 LYS HXT H N N 288 MET N N N N 289 MET CA C N S 290 MET C C N N 291 MET O O N N 292 MET CB C N N 293 MET CG C N N 294 MET SD S N N 295 MET CE C N N 296 MET OXT O N N 297 MET H H N N 298 MET H2 H N N 299 MET HA H N N 300 MET HB2 H N N 301 MET HB3 H N N 302 MET HG2 H N N 303 MET HG3 H N N 304 MET HE1 H N N 305 MET HE2 H N N 306 MET HE3 H N N 307 MET HXT H N N 308 PHE N N N N 309 PHE CA C N S 310 PHE C C N N 311 PHE O O N N 312 PHE CB C N N 313 PHE CG C Y N 314 PHE CD1 C Y N 315 PHE CD2 C Y N 316 PHE CE1 C Y N 317 PHE CE2 C Y N 318 PHE CZ C Y N 319 PHE OXT O N N 320 PHE H H N N 321 PHE H2 H N N 322 PHE HA H N N 323 PHE HB2 H N N 324 PHE HB3 H N N 325 PHE HD1 H N N 326 PHE HD2 H N N 327 PHE HE1 H N N 328 PHE HE2 H N N 329 PHE HZ H N N 330 PHE HXT H N N 331 PRO N N N N 332 PRO CA C N S 333 PRO C C N N 334 PRO O O N N 335 PRO CB C N N 336 PRO CG C N N 337 PRO CD C N N 338 PRO OXT O N N 339 PRO H H N N 340 PRO HA H N N 341 PRO HB2 H N N 342 PRO HB3 H N N 343 PRO HG2 H N N 344 PRO HG3 H N N 345 PRO HD2 H N N 346 PRO HD3 H N N 347 PRO HXT H N N 348 SER N N N N 349 SER CA C N S 350 SER C C N N 351 SER O O N N 352 SER CB C N N 353 SER OG O N N 354 SER OXT O N N 355 SER H H N N 356 SER H2 H N N 357 SER HA H N N 358 SER HB2 H N N 359 SER HB3 H N N 360 SER HG H N N 361 SER HXT H N N 362 THR N N N N 363 THR CA C N S 364 THR C C N N 365 THR O O N N 366 THR CB C N R 367 THR OG1 O N N 368 THR CG2 C N N 369 THR OXT O N N 370 THR H H N N 371 THR H2 H N N 372 THR HA H N N 373 THR HB H N N 374 THR HG1 H N N 375 THR HG21 H N N 376 THR HG22 H N N 377 THR HG23 H N N 378 THR HXT H N N 379 TRP N N N N 380 TRP CA C N S 381 TRP C C N N 382 TRP O O N N 383 TRP CB C N N 384 TRP CG C Y N 385 TRP CD1 C Y N 386 TRP CD2 C Y N 387 TRP NE1 N Y N 388 TRP CE2 C Y N 389 TRP CE3 C Y N 390 TRP CZ2 C Y N 391 TRP CZ3 C Y N 392 TRP CH2 C Y N 393 TRP OXT O N N 394 TRP H H N N 395 TRP H2 H N N 396 TRP HA H N N 397 TRP HB2 H N N 398 TRP HB3 H N N 399 TRP HD1 H N N 400 TRP HE1 H N N 401 TRP HE3 H N N 402 TRP HZ2 H N N 403 TRP HZ3 H N N 404 TRP HH2 H N N 405 TRP HXT H N N 406 TYR N N N N 407 TYR CA C N S 408 TYR C C N N 409 TYR O O N N 410 TYR CB C N N 411 TYR CG C Y N 412 TYR CD1 C Y N 413 TYR CD2 C Y N 414 TYR CE1 C Y N 415 TYR CE2 C Y N 416 TYR CZ C Y N 417 TYR OH O N N 418 TYR OXT O N N 419 TYR H H N N 420 TYR H2 H N N 421 TYR HA H N N 422 TYR HB2 H N N 423 TYR HB3 H N N 424 TYR HD1 H N N 425 TYR HD2 H N N 426 TYR HE1 H N N 427 TYR HE2 H N N 428 TYR HH H N N 429 TYR HXT H N N 430 VAL N N N N 431 VAL CA C N S 432 VAL C C N N 433 VAL O O N N 434 VAL CB C N N 435 VAL CG1 C N N 436 VAL CG2 C N N 437 VAL OXT O N N 438 VAL H H N N 439 VAL H2 H N N 440 VAL HA H N N 441 VAL HB H N N 442 VAL HG11 H N N 443 VAL HG12 H N N 444 VAL HG13 H N N 445 VAL HG21 H N N 446 VAL HG22 H N N 447 VAL HG23 H N N 448 VAL HXT H N N 449 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1K0 C5 O2 sing N N 1 1K0 O2 C4 sing N N 2 1K0 C3 C4 doub Y N 3 1K0 C3 C2 sing Y N 4 1K0 O1 C2 sing N N 5 1K0 O1 C1 sing N N 6 1K0 C4 C6 sing Y N 7 1K0 C2 C20 doub Y N 8 1K0 C6 C19 doub Y N 9 1K0 C6 C7 sing N N 10 1K0 C20 C19 sing Y N 11 1K0 O5 C7 doub N N 12 1K0 C19 N2 sing N N 13 1K0 C7 N1 sing N N 14 1K0 N2 C8 doub N N 15 1K0 N1 C8 sing N N 16 1K0 C8 C9 sing N N 17 1K0 C9 C18 doub Y N 18 1K0 C9 C10 sing Y N 19 1K0 C18 C16 sing Y N 20 1K0 C10 C11 doub Y N 21 1K0 C16 C17 sing N N 22 1K0 C16 C13 doub Y N 23 1K0 C11 C13 sing Y N 24 1K0 C11 C12 sing N N 25 1K0 C13 O3 sing N N 26 1K0 O3 C14 sing N N 27 1K0 C14 C15 sing N N 28 1K0 O4 C15 sing N N 29 1K0 C1 H1 sing N N 30 1K0 C1 H2 sing N N 31 1K0 C1 H3 sing N N 32 1K0 C3 H4 sing N N 33 1K0 N1 H5 sing N N 34 1K0 C5 H6 sing N N 35 1K0 C5 H7 sing N N 36 1K0 C5 H8 sing N N 37 1K0 O4 H9 sing N N 38 1K0 C18 H10 sing N N 39 1K0 C17 H11 sing N N 40 1K0 C17 H12 sing N N 41 1K0 C17 H13 sing N N 42 1K0 C14 H14 sing N N 43 1K0 C14 H15 sing N N 44 1K0 C15 H16 sing N N 45 1K0 C15 H17 sing N N 46 1K0 C12 H18 sing N N 47 1K0 C12 H19 sing N N 48 1K0 C12 H20 sing N N 49 1K0 C10 H21 sing N N 50 1K0 C20 H22 sing N N 51 ALA N CA sing N N 52 ALA N H sing N N 53 ALA N H2 sing N N 54 ALA CA C sing N N 55 ALA CA CB sing N N 56 ALA CA HA sing N N 57 ALA C O doub N N 58 ALA C OXT sing N N 59 ALA CB HB1 sing N N 60 ALA CB HB2 sing N N 61 ALA CB HB3 sing N N 62 ALA OXT HXT sing N N 63 ARG N CA sing N N 64 ARG N H sing N N 65 ARG N H2 sing N N 66 ARG CA C sing N N 67 ARG CA CB sing N N 68 ARG CA HA sing N N 69 ARG C O doub N N 70 ARG C OXT sing N N 71 ARG CB CG sing N N 72 ARG CB HB2 sing N N 73 ARG CB HB3 sing N N 74 ARG CG CD sing N N 75 ARG CG HG2 sing N N 76 ARG CG HG3 sing N N 77 ARG CD NE sing N N 78 ARG CD HD2 sing N N 79 ARG CD HD3 sing N N 80 ARG NE CZ sing N N 81 ARG NE HE sing N N 82 ARG CZ NH1 sing N N 83 ARG CZ NH2 doub N N 84 ARG NH1 HH11 sing N N 85 ARG NH1 HH12 sing N N 86 ARG NH2 HH21 sing N N 87 ARG NH2 HH22 sing N N 88 ARG OXT HXT sing N N 89 ASN N CA sing N N 90 ASN N H sing N N 91 ASN N H2 sing N N 92 ASN CA C sing N N 93 ASN CA CB sing N N 94 ASN CA HA sing N N 95 ASN C O doub N N 96 ASN C OXT sing N N 97 ASN CB CG sing N N 98 ASN CB HB2 sing N N 99 ASN CB HB3 sing N N 100 ASN CG OD1 doub N N 101 ASN CG ND2 sing N N 102 ASN ND2 HD21 sing N N 103 ASN ND2 HD22 sing N N 104 ASN OXT HXT sing N N 105 ASP N CA sing N N 106 ASP N H sing N N 107 ASP N H2 sing N N 108 ASP CA C sing N N 109 ASP CA CB sing N N 110 ASP CA HA sing N N 111 ASP C O doub N N 112 ASP C OXT sing N N 113 ASP CB CG sing N N 114 ASP CB HB2 sing N N 115 ASP CB HB3 sing N N 116 ASP CG OD1 doub N N 117 ASP CG OD2 sing N N 118 ASP OD2 HD2 sing N N 119 ASP OXT HXT sing N N 120 CYS N CA sing N N 121 CYS N H sing N N 122 CYS N H2 sing N N 123 CYS CA C sing N N 124 CYS CA CB sing N N 125 CYS CA HA sing N N 126 CYS C O doub N N 127 CYS C OXT sing N N 128 CYS CB SG sing N N 129 CYS CB HB2 sing N N 130 CYS CB HB3 sing N N 131 CYS SG HG sing N N 132 CYS OXT HXT sing N N 133 EDO C1 O1 sing N N 134 EDO C1 C2 sing N N 135 EDO C1 H11 sing N N 136 EDO C1 H12 sing N N 137 EDO O1 HO1 sing N N 138 EDO C2 O2 sing N N 139 EDO C2 H21 sing N N 140 EDO C2 H22 sing N N 141 EDO O2 HO2 sing N N 142 GLN N CA sing N N 143 GLN N H sing N N 144 GLN N H2 sing N N 145 GLN CA C sing N N 146 GLN CA CB sing N N 147 GLN CA HA sing N N 148 GLN C O doub N N 149 GLN C OXT sing N N 150 GLN CB CG sing N N 151 GLN CB HB2 sing N N 152 GLN CB HB3 sing N N 153 GLN CG CD sing N N 154 GLN CG HG2 sing N N 155 GLN CG HG3 sing N N 156 GLN CD OE1 doub N N 157 GLN CD NE2 sing N N 158 GLN NE2 HE21 sing N N 159 GLN NE2 HE22 sing N N 160 GLN OXT HXT sing N N 161 GLU N CA sing N N 162 GLU N H sing N N 163 GLU N H2 sing N N 164 GLU CA C sing N N 165 GLU CA CB sing N N 166 GLU CA HA sing N N 167 GLU C O doub N N 168 GLU C OXT sing N N 169 GLU CB CG sing N N 170 GLU CB HB2 sing N N 171 GLU CB HB3 sing N N 172 GLU CG CD sing N N 173 GLU CG HG2 sing N N 174 GLU CG HG3 sing N N 175 GLU CD OE1 doub N N 176 GLU CD OE2 sing N N 177 GLU OE2 HE2 sing N N 178 GLU OXT HXT sing N N 179 GLY N CA sing N N 180 GLY N H sing N N 181 GLY N H2 sing N N 182 GLY CA C sing N N 183 GLY CA HA2 sing N N 184 GLY CA HA3 sing N N 185 GLY C O doub N N 186 GLY C OXT sing N N 187 GLY OXT HXT sing N N 188 HIS N CA sing N N 189 HIS N H sing N N 190 HIS N H2 sing N N 191 HIS CA C sing N N 192 HIS CA CB sing N N 193 HIS CA HA sing N N 194 HIS C O doub N N 195 HIS C OXT sing N N 196 HIS CB CG sing N N 197 HIS CB HB2 sing N N 198 HIS CB HB3 sing N N 199 HIS CG ND1 sing Y N 200 HIS CG CD2 doub Y N 201 HIS ND1 CE1 doub Y N 202 HIS ND1 HD1 sing N N 203 HIS CD2 NE2 sing Y N 204 HIS CD2 HD2 sing N N 205 HIS CE1 NE2 sing Y N 206 HIS CE1 HE1 sing N N 207 HIS NE2 HE2 sing N N 208 HIS OXT HXT sing N N 209 HOH O H1 sing N N 210 HOH O H2 sing N N 211 ILE N CA sing N N 212 ILE N H sing N N 213 ILE N H2 sing N N 214 ILE CA C sing N N 215 ILE CA CB sing N N 216 ILE CA HA sing N N 217 ILE C O doub N N 218 ILE C OXT sing N N 219 ILE CB CG1 sing N N 220 ILE CB CG2 sing N N 221 ILE CB HB sing N N 222 ILE CG1 CD1 sing N N 223 ILE CG1 HG12 sing N N 224 ILE CG1 HG13 sing N N 225 ILE CG2 HG21 sing N N 226 ILE CG2 HG22 sing N N 227 ILE CG2 HG23 sing N N 228 ILE CD1 HD11 sing N N 229 ILE CD1 HD12 sing N N 230 ILE CD1 HD13 sing N N 231 ILE OXT HXT sing N N 232 LEU N CA sing N N 233 LEU N H sing N N 234 LEU N H2 sing N N 235 LEU CA C sing N N 236 LEU CA CB sing N N 237 LEU CA HA sing N N 238 LEU C O doub N N 239 LEU C OXT sing N N 240 LEU CB CG sing N N 241 LEU CB HB2 sing N N 242 LEU CB HB3 sing N N 243 LEU CG CD1 sing N N 244 LEU CG CD2 sing N N 245 LEU CG HG sing N N 246 LEU CD1 HD11 sing N N 247 LEU CD1 HD12 sing N N 248 LEU CD1 HD13 sing N N 249 LEU CD2 HD21 sing N N 250 LEU CD2 HD22 sing N N 251 LEU CD2 HD23 sing N N 252 LEU OXT HXT sing N N 253 LYS N CA sing N N 254 LYS N H sing N N 255 LYS N H2 sing N N 256 LYS CA C sing N N 257 LYS CA CB sing N N 258 LYS CA HA sing N N 259 LYS C O doub N N 260 LYS C OXT sing N N 261 LYS CB CG sing N N 262 LYS CB HB2 sing N N 263 LYS CB HB3 sing N N 264 LYS CG CD sing N N 265 LYS CG HG2 sing N N 266 LYS CG HG3 sing N N 267 LYS CD CE sing N N 268 LYS CD HD2 sing N N 269 LYS CD HD3 sing N N 270 LYS CE NZ sing N N 271 LYS CE HE2 sing N N 272 LYS CE HE3 sing N N 273 LYS NZ HZ1 sing N N 274 LYS NZ HZ2 sing N N 275 LYS NZ HZ3 sing N N 276 LYS OXT HXT sing N N 277 MET N CA sing N N 278 MET N H sing N N 279 MET N H2 sing N N 280 MET CA C sing N N 281 MET CA CB sing N N 282 MET CA HA sing N N 283 MET C O doub N N 284 MET C OXT sing N N 285 MET CB CG sing N N 286 MET CB HB2 sing N N 287 MET CB HB3 sing N N 288 MET CG SD sing N N 289 MET CG HG2 sing N N 290 MET CG HG3 sing N N 291 MET SD CE sing N N 292 MET CE HE1 sing N N 293 MET CE HE2 sing N N 294 MET CE HE3 sing N N 295 MET OXT HXT sing N N 296 PHE N CA sing N N 297 PHE N H sing N N 298 PHE N H2 sing N N 299 PHE CA C sing N N 300 PHE CA CB sing N N 301 PHE CA HA sing N N 302 PHE C O doub N N 303 PHE C OXT sing N N 304 PHE CB CG sing N N 305 PHE CB HB2 sing N N 306 PHE CB HB3 sing N N 307 PHE CG CD1 doub Y N 308 PHE CG CD2 sing Y N 309 PHE CD1 CE1 sing Y N 310 PHE CD1 HD1 sing N N 311 PHE CD2 CE2 doub Y N 312 PHE CD2 HD2 sing N N 313 PHE CE1 CZ doub Y N 314 PHE CE1 HE1 sing N N 315 PHE CE2 CZ sing Y N 316 PHE CE2 HE2 sing N N 317 PHE CZ HZ sing N N 318 PHE OXT HXT sing N N 319 PRO N CA sing N N 320 PRO N CD sing N N 321 PRO N H sing N N 322 PRO CA C sing N N 323 PRO CA CB sing N N 324 PRO CA HA sing N N 325 PRO C O doub N N 326 PRO C OXT sing N N 327 PRO CB CG sing N N 328 PRO CB HB2 sing N N 329 PRO CB HB3 sing N N 330 PRO CG CD sing N N 331 PRO CG HG2 sing N N 332 PRO CG HG3 sing N N 333 PRO CD HD2 sing N N 334 PRO CD HD3 sing N N 335 PRO OXT HXT sing N N 336 SER N CA sing N N 337 SER N H sing N N 338 SER N H2 sing N N 339 SER CA C sing N N 340 SER CA CB sing N N 341 SER CA HA sing N N 342 SER C O doub N N 343 SER C OXT sing N N 344 SER CB OG sing N N 345 SER CB HB2 sing N N 346 SER CB HB3 sing N N 347 SER OG HG sing N N 348 SER OXT HXT sing N N 349 THR N CA sing N N 350 THR N H sing N N 351 THR N H2 sing N N 352 THR CA C sing N N 353 THR CA CB sing N N 354 THR CA HA sing N N 355 THR C O doub N N 356 THR C OXT sing N N 357 THR CB OG1 sing N N 358 THR CB CG2 sing N N 359 THR CB HB sing N N 360 THR OG1 HG1 sing N N 361 THR CG2 HG21 sing N N 362 THR CG2 HG22 sing N N 363 THR CG2 HG23 sing N N 364 THR OXT HXT sing N N 365 TRP N CA sing N N 366 TRP N H sing N N 367 TRP N H2 sing N N 368 TRP CA C sing N N 369 TRP CA CB sing N N 370 TRP CA HA sing N N 371 TRP C O doub N N 372 TRP C OXT sing N N 373 TRP CB CG sing N N 374 TRP CB HB2 sing N N 375 TRP CB HB3 sing N N 376 TRP CG CD1 doub Y N 377 TRP CG CD2 sing Y N 378 TRP CD1 NE1 sing Y N 379 TRP CD1 HD1 sing N N 380 TRP CD2 CE2 doub Y N 381 TRP CD2 CE3 sing Y N 382 TRP NE1 CE2 sing Y N 383 TRP NE1 HE1 sing N N 384 TRP CE2 CZ2 sing Y N 385 TRP CE3 CZ3 doub Y N 386 TRP CE3 HE3 sing N N 387 TRP CZ2 CH2 doub Y N 388 TRP CZ2 HZ2 sing N N 389 TRP CZ3 CH2 sing Y N 390 TRP CZ3 HZ3 sing N N 391 TRP CH2 HH2 sing N N 392 TRP OXT HXT sing N N 393 TYR N CA sing N N 394 TYR N H sing N N 395 TYR N H2 sing N N 396 TYR CA C sing N N 397 TYR CA CB sing N N 398 TYR CA HA sing N N 399 TYR C O doub N N 400 TYR C OXT sing N N 401 TYR CB CG sing N N 402 TYR CB HB2 sing N N 403 TYR CB HB3 sing N N 404 TYR CG CD1 doub Y N 405 TYR CG CD2 sing Y N 406 TYR CD1 CE1 sing Y N 407 TYR CD1 HD1 sing N N 408 TYR CD2 CE2 doub Y N 409 TYR CD2 HD2 sing N N 410 TYR CE1 CZ doub Y N 411 TYR CE1 HE1 sing N N 412 TYR CE2 CZ sing Y N 413 TYR CE2 HE2 sing N N 414 TYR CZ OH sing N N 415 TYR OH HH sing N N 416 TYR OXT HXT sing N N 417 VAL N CA sing N N 418 VAL N H sing N N 419 VAL N H2 sing N N 420 VAL CA C sing N N 421 VAL CA CB sing N N 422 VAL CA HA sing N N 423 VAL C O doub N N 424 VAL C OXT sing N N 425 VAL CB CG1 sing N N 426 VAL CB CG2 sing N N 427 VAL CB HB sing N N 428 VAL CG1 HG11 sing N N 429 VAL CG1 HG12 sing N N 430 VAL CG1 HG13 sing N N 431 VAL CG2 HG21 sing N N 432 VAL CG2 HG22 sing N N 433 VAL CG2 HG23 sing N N 434 VAL OXT HXT sing N N 435 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one' 1K0 3 1,2-ETHANEDIOL EDO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ONI _pdbx_initial_refinement_model.details 'PDB ENTRY 3ONI' #