HEADER HYDROLASE 04-FEB-13 4J2M TITLE MOLECULAR ENGINEERING OF ORGANOPHOSPHATE HYDROLYSIS ACTIVITY FROM A TITLE 2 WEAK PROMISCUOUS LACTONASE TEMPLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, ORGANOPHOSPHATE HYDROLYSIS ACTIVITY EXPDTA X-RAY DIFFRACTION AUTHOR C.RAJENDRAN,M.MEIER,S.REINHARD REVDAT 2 04-SEP-13 4J2M 1 JRNL REVDAT 1 24-JUL-13 4J2M 0 JRNL AUTH M.M.MEIER,C.RAJENDRAN,C.MALISI,N.G.FOX,C.XU,S.SCHLEE, JRNL AUTH 2 D.P.BARONDEAU,B.HOCKER,R.STERNER,F.M.RAUSHEL JRNL TITL MOLECULAR ENGINEERING OF ORGANOPHOSPHATE HYDROLYSIS ACTIVITY JRNL TITL 2 FROM A WEAK PROMISCUOUS LACTONASE TEMPLATE. JRNL REF J.AM.CHEM.SOC. V. 135 11670 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23837603 JRNL DOI 10.1021/JA405911H REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 43548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3818 - 4.4993 1.00 2831 151 0.2485 0.2615 REMARK 3 2 4.4993 - 3.5716 1.00 2673 141 0.1790 0.2044 REMARK 3 3 3.5716 - 3.1203 1.00 2648 140 0.2071 0.2235 REMARK 3 4 3.1203 - 2.8350 1.00 2597 137 0.2054 0.2371 REMARK 3 5 2.8350 - 2.6318 1.00 2635 138 0.2097 0.2478 REMARK 3 6 2.6318 - 2.4767 0.99 2544 134 0.2198 0.2692 REMARK 3 7 2.4767 - 2.3526 0.99 2597 137 0.2217 0.2882 REMARK 3 8 2.3526 - 2.2502 0.99 2555 134 0.2186 0.2803 REMARK 3 9 2.2502 - 2.1636 0.99 2583 137 0.2281 0.2799 REMARK 3 10 2.1636 - 2.0889 0.99 2551 133 0.2309 0.2821 REMARK 3 11 2.0889 - 2.0236 0.99 2544 134 0.2342 0.2871 REMARK 3 12 2.0236 - 1.9658 0.99 2548 134 0.2330 0.2362 REMARK 3 13 1.9658 - 1.9140 0.99 2537 134 0.2369 0.2923 REMARK 3 14 1.9140 - 1.8673 0.99 2532 133 0.2566 0.3459 REMARK 3 15 1.8673 - 1.8249 0.99 2538 134 0.2696 0.3059 REMARK 3 16 1.8249 - 1.7860 0.96 2455 129 0.3033 0.3121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 42.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.69270 REMARK 3 B22 (A**2) : 6.69270 REMARK 3 B33 (A**2) : -13.38530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2486 REMARK 3 ANGLE : 1.337 3384 REMARK 3 CHIRALITY : 0.073 381 REMARK 3 PLANARITY : 0.007 450 REMARK 3 DIHEDRAL : 14.465 890 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43548 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 47.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 1.3 M MGSO4, VAPOR REMARK 280 DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.90233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 135.80467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 135.80467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.90233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 THR A 104 OG1 CG2 REMARK 470 THR A 105 OG1 CG2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 218 HH22 ARG A 258 1.14 REMARK 500 HE1 PHE A 97 HD1 TYR A 98 1.33 REMARK 500 OE1 GLU A 122 HH21 ARG A 125 1.49 REMARK 500 OD1 ASP A 257 O HOH A 766 1.83 REMARK 500 O LEU A 218 NH2 ARG A 258 1.87 REMARK 500 O HOH A 651 O HOH A 653 1.91 REMARK 500 O HOH A 768 O HOH A 769 1.92 REMARK 500 OD1 ASP A 286 O HOH A 760 1.92 REMARK 500 O HOH A 728 O HOH A 760 1.99 REMARK 500 OE2 GLU A 99 O HOH A 758 1.99 REMARK 500 NH1 ARG A 167 O HOH A 699 2.01 REMARK 500 O HOH A 714 O HOH A 731 2.03 REMARK 500 O HOH A 732 O HOH A 752 2.03 REMARK 500 OD2 ASP A 286 O HOH A 665 2.06 REMARK 500 O HOH A 663 O HOH A 668 2.13 REMARK 500 O HOH A 562 O HOH A 754 2.14 REMARK 500 O HOH A 631 O HOH A 641 2.15 REMARK 500 O HOH A 642 O HOH A 654 2.15 REMARK 500 OE1 GLU A 122 NH2 ARG A 125 2.15 REMARK 500 O HOH A 660 O HOH A 674 2.17 REMARK 500 OE2 GLU A 122 O HOH A 704 2.18 REMARK 500 O HOH A 585 O HOH A 690 2.19 REMARK 500 O HOH A 682 O HOH A 684 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 761 O HOH A 766 5544 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 97 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 134.33 43.36 REMARK 500 TYR A 98 153.51 -29.65 REMARK 500 ALA A 103 -133.90 58.57 REMARK 500 THR A 104 179.11 75.90 REMARK 500 THR A 105 -46.80 74.30 REMARK 500 VAL A 315 -52.06 -127.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 764 DISTANCE = 5.13 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 756 O REMARK 620 2 HIS A 23 NE2 133.7 REMARK 620 3 HIS A 21 NE2 113.5 111.6 REMARK 620 4 ASP A 264 OD1 85.0 88.5 85.4 REMARK 620 5 KCX A 143 OQ1 95.1 88.3 98.5 175.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 204 NE2 REMARK 620 2 HOH A 756 O 101.0 REMARK 620 3 HIS A 176 ND1 95.7 151.1 REMARK 620 4 KCX A 143 OQ2 113.7 91.6 103.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J35 RELATED DB: PDB DBREF 4J2M A 1 323 UNP Q9RVU2 Q9RVU2_DEIRA 1 323 SEQADV 4J2M LEU A 28 UNP Q9RVU2 TYR 28 ENGINEERED MUTATION SEQADV 4J2M ASN A 71 UNP Q9RVU2 ASP 71 ENGINEERED MUTATION SEQADV 4J2M PHE A 97 UNP Q9RVU2 TYR 97 ENGINEERED MUTATION SEQADV 4J2M GLY A 101 UNP Q9RVU2 GLU 101 ENGINEERED MUTATION SEQADV 4J2M ASP A 179 UNP Q9RVU2 GLU 179 ENGINEERED MUTATION SEQADV 4J2M LEU A 235 UNP Q9RVU2 VAL 235 ENGINEERED MUTATION SEQADV 4J2M MET A 270 UNP Q9RVU2 LEU 270 ENGINEERED MUTATION SEQRES 1 A 323 MET THR ALA GLN THR VAL THR GLY ALA VAL ALA ALA ALA SEQRES 2 A 323 GLN LEU GLY ALA THR LEU PRO HIS GLU HIS VAL ILE PHE SEQRES 3 A 323 GLY LEU PRO GLY TYR ALA GLY ASP VAL THR LEU GLY PRO SEQRES 4 A 323 PHE ASP HIS ALA ALA ALA LEU ALA SER CYS THR GLU THR SEQRES 5 A 323 ALA ARG ALA LEU LEU ALA ARG GLY ILE GLN THR VAL VAL SEQRES 6 A 323 ASP ALA THR PRO ASN ASN CYS GLY ARG ASN PRO ALA PHE SEQRES 7 A 323 LEU ARG GLU VAL SER GLU ALA THR GLY LEU GLN ILE LEU SEQRES 8 A 323 CYS ALA THR GLY PHE PHE TYR GLU GLY GLY GLY ALA THR SEQRES 9 A 323 THR TYR PHE LYS PHE ARG ALA SER LEU GLY ASP ALA GLU SEQRES 10 A 323 SER GLU ILE TYR GLU MET MET ARG THR GLU VAL THR GLU SEQRES 11 A 323 GLY ILE ALA GLY THR GLY ILE ARG ALA GLY VAL ILE KCX SEQRES 12 A 323 LEU ALA SER SER ARG ASP ALA ILE THR PRO TYR GLU GLN SEQRES 13 A 323 LEU PHE PHE ARG ALA ALA ALA ARG VAL GLN ARG GLU THR SEQRES 14 A 323 GLY VAL PRO ILE ILE THR HIS THR GLN ASP GLY GLN GLN SEQRES 15 A 323 GLY PRO GLN GLN ALA GLU LEU LEU THR SER LEU GLY ALA SEQRES 16 A 323 ASP PRO ALA ARG ILE MET ILE GLY HIS MET ASP GLY ASN SEQRES 17 A 323 THR ASP PRO ALA TYR HIS ARG GLU THR LEU ARG HIS GLY SEQRES 18 A 323 VAL SER ILE ALA PHE ASP ARG ILE GLY LEU GLN GLY MET SEQRES 19 A 323 LEU GLY THR PRO THR ASP ALA GLU ARG LEU SER VAL LEU SEQRES 20 A 323 THR THR LEU LEU GLY GLU GLY TYR ALA ASP ARG LEU LEU SEQRES 21 A 323 LEU SER HIS ASP SER ILE TRP HIS TRP MET GLY ARG PRO SEQRES 22 A 323 PRO ALA ILE PRO GLU ALA ALA LEU PRO ALA VAL LYS ASP SEQRES 23 A 323 TRP HIS PRO LEU HIS ILE SER ASP ASP ILE LEU PRO ASP SEQRES 24 A 323 LEU ARG ARG ARG GLY ILE THR GLU GLU GLN VAL GLY GLN SEQRES 25 A 323 MET THR VAL GLY ASN PRO ALA ARG LEU PHE GLY MODRES 4J2M KCX A 143 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 143 12 HET CO A 401 1 HET CO A 402 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CO COBALT (II) ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 CO 2(CO 2+) FORMUL 4 HOH *272(H2 O) HELIX 1 1 ALA A 11 LEU A 15 5 5 HELIX 2 2 GLY A 30 VAL A 35 5 6 HELIX 3 3 ASP A 41 ARG A 59 1 19 HELIX 4 4 ASN A 75 GLY A 87 1 13 HELIX 5 5 THR A 105 GLY A 114 1 10 HELIX 6 6 ASP A 115 GLU A 130 1 16 HELIX 7 7 THR A 152 GLY A 170 1 19 HELIX 8 8 GLN A 182 LEU A 193 1 12 HELIX 9 9 ASP A 196 ALA A 198 5 3 HELIX 10 10 HIS A 204 ASN A 208 5 5 HELIX 11 11 ASP A 210 ARG A 219 1 10 HELIX 12 12 THR A 239 GLU A 253 1 15 HELIX 13 13 GLY A 254 ASP A 257 5 4 HELIX 14 14 PRO A 277 ALA A 279 5 3 HELIX 15 15 ALA A 280 ASP A 286 1 7 HELIX 16 16 LEU A 290 ASP A 295 1 6 HELIX 17 17 ASP A 295 ARG A 303 1 9 HELIX 18 18 THR A 306 VAL A 315 1 10 HELIX 19 19 VAL A 315 GLY A 323 1 9 SHEET 1 A 2 ALA A 3 THR A 5 0 SHEET 2 A 2 GLY A 8 VAL A 10 -1 O VAL A 10 N ALA A 3 SHEET 1 B 4 GLN A 89 LEU A 91 0 SHEET 2 B 4 ILE A 61 ASP A 66 1 N ASP A 66 O LEU A 91 SHEET 3 B 4 ALA A 17 PHE A 26 1 N LEU A 19 O VAL A 65 SHEET 4 B 4 ILE A 266 TRP A 269 1 O TRP A 267 N HIS A 23 SHEET 1 C 6 ALA A 93 THR A 94 0 SHEET 2 C 6 VAL A 141 ALA A 145 1 O KCX A 143 N THR A 94 SHEET 3 C 6 ILE A 173 HIS A 176 1 O ILE A 174 N ILE A 142 SHEET 4 C 6 ILE A 200 ILE A 202 1 O MET A 201 N ILE A 173 SHEET 5 C 6 SER A 223 PHE A 226 1 O SER A 223 N ILE A 202 SHEET 6 C 6 LEU A 259 LEU A 261 1 O LEU A 260 N PHE A 226 LINK C ILE A 142 N KCX A 143 1555 1555 1.33 LINK C KCX A 143 N LEU A 144 1555 1555 1.34 LINK CO CO A 401 O HOH A 756 1555 1555 1.84 LINK NE2 HIS A 23 CO CO A 401 1555 1555 1.97 LINK NE2 HIS A 204 CO CO A 402 1555 1555 2.07 LINK CO CO A 402 O HOH A 756 1555 1555 2.11 LINK NE2 HIS A 21 CO CO A 401 1555 1555 2.11 LINK ND1 HIS A 176 CO CO A 402 1555 1555 2.11 LINK OD1 ASP A 264 CO CO A 401 1555 1555 2.12 LINK OQ2 KCX A 143 CO CO A 402 1555 1555 1.93 LINK OQ1 KCX A 143 CO CO A 401 1555 1555 2.11 SITE 1 AC1 6 HIS A 21 HIS A 23 KCX A 143 ASP A 264 SITE 2 AC1 6 CO A 402 HOH A 756 SITE 1 AC2 5 KCX A 143 HIS A 176 HIS A 204 CO A 401 SITE 2 AC2 5 HOH A 756 CRYST1 61.779 61.779 203.707 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016187 0.009345 0.000000 0.00000 SCALE2 0.000000 0.018691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004909 0.00000