HEADER TRANSFERASE 05-FEB-13 4J3C TITLE CRYSTAL STRUCTURE OF 16S RIBOSOMAL RNA METHYLTRANSFERASE RSME COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.193; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: R00771, SMC00826; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS NYSGRC, PSI-BIOLOGY, STRUCTURAL GENOMICS, NEW YORK STRUCTURAL KEYWDS 2 GENOMICS RESEARCH CONSORTIUM, THREE LAYER, TWO DOMAINS, METHYLATION, KEYWDS 3 RRNA PROCESSING, S-ADENOSYL-L-METHIONINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ESWARAMOORTHY,S.CHAMALA,B.EVANS,F.FOTI,A.GIZZI,B.HILLERICH,A.KAR, AUTHOR 2 J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,N.AL OBAIDI,S.C.ALMO, AUTHOR 3 S.SWAMINATHAN,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 4 (NYSGRC) REVDAT 1 20-FEB-13 4J3C 0 JRNL AUTH S.ESWARAMOORTHY,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF 16S RIBOSOMAL RNA METHYLTRANSFERASE JRNL TITL 2 RSME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 37312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1969 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -2.59000 REMARK 3 B33 (A**2) : 1.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.116 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3608 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4891 ; 1.496 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 6.115 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;34.196 ;23.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 602 ;17.380 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.611 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2730 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2313 ; 0.766 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3688 ; 1.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 2.374 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1203 ; 3.846 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 60.1315 10.4701 23.6531 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.1585 REMARK 3 T33: 0.0489 T12: -0.0234 REMARK 3 T13: -0.0099 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.7917 L22: 3.9230 REMARK 3 L33: 1.0955 L12: -1.8392 REMARK 3 L13: -0.6024 L23: 0.5795 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: 0.2745 S13: -0.0461 REMARK 3 S21: -0.0616 S22: -0.0862 S23: -0.1957 REMARK 3 S31: 0.0609 S32: -0.0873 S33: 0.1409 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): 82.5544 23.2329 25.4670 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.2228 REMARK 3 T33: 0.5494 T12: -0.0359 REMARK 3 T13: -0.1315 T23: 0.0723 REMARK 3 L TENSOR REMARK 3 L11: 0.3381 L22: 2.9804 REMARK 3 L33: 0.7405 L12: 0.6593 REMARK 3 L13: -0.3811 L23: -0.4823 REMARK 3 S TENSOR REMARK 3 S11: -0.1114 S12: 0.0968 S13: -0.0192 REMARK 3 S21: -0.0571 S22: 0.0548 S23: -0.7368 REMARK 3 S31: -0.0366 S32: -0.0038 S33: 0.0566 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4J3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9733 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 0.1M HEPES, 0.2M L- REMARK 280 PROLINE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.04250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.04100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.04250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.04100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 PHE A 5 REMARK 465 ARG A 6 REMARK 465 ASN A 30 REMARK 465 TYR A 31 REMARK 465 LEU A 32 REMARK 465 ILE A 33 REMARK 465 LYS A 64 REMARK 465 ASN A 173 REMARK 465 ASP A 174 REMARK 465 MSE B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 ALA B 3 REMARK 465 ASN B 4 REMARK 465 PHE B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 64 REMARK 465 LYS B 91 REMARK 465 ASP B 170 REMARK 465 GLU B 171 REMARK 465 GLY B 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 8 CG CD OE1 NE2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 PHE B 29 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 34 CG OD1 ND2 REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 65 CG CD OE1 NE2 REMARK 470 VAL B 92 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 104.07 -53.51 REMARK 500 ARG A 26 -24.18 56.18 REMARK 500 GLU A 27 22.79 -70.42 REMARK 500 GLN A 28 7.36 -51.79 REMARK 500 LEU A 36 34.58 -82.60 REMARK 500 MSE A 60 81.90 64.36 REMARK 500 VAL B 71 -60.19 -103.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-021602 RELATED DB: TARGETTRACK DBREF 4J3C A 1 245 UNP Q92RS8 Q92RS8_RHIME 1 245 DBREF 4J3C B 1 245 UNP Q92RS8 Q92RS8_RHIME 1 245 SEQADV 4J3C MSE A -21 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS A -20 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS A -19 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS A -18 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS A -17 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS A -16 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS A -15 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C SER A -14 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C SER A -13 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C GLY A -12 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C VAL A -11 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C ASP A -10 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C LEU A -9 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C GLY A -8 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C THR A -7 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C GLU A -6 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C ASN A -5 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C LEU A -4 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C TYR A -3 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C PHE A -2 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C GLN A -1 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C SER A 0 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C MSE B -21 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS B -20 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS B -19 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS B -18 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS B -17 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS B -16 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C HIS B -15 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C SER B -14 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C SER B -13 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C GLY B -12 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C VAL B -11 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C ASP B -10 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C LEU B -9 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C GLY B -8 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C THR B -7 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C GLU B -6 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C ASN B -5 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C LEU B -4 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C TYR B -3 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C PHE B -2 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C GLN B -1 UNP Q92RS8 EXPRESSION TAG SEQADV 4J3C SER B 0 UNP Q92RS8 EXPRESSION TAG SEQRES 1 A 267 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 267 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ARG ALA ASN SEQRES 3 A 267 PHE ARG MSE GLN ARG LEU PHE ILE GLU ASN ALA LEU HIS SEQRES 4 A 267 ALA GLY ALA LYS HIS GLU ALA THR ARG GLU GLN PHE ASN SEQRES 5 A 267 TYR LEU ILE ASN VAL LEU ARG LEU GLY GLU GLY SER SER SEQRES 6 A 267 LEU LEU VAL PHE ASN GLY ARG ASP GLY GLU TRP ARG ALA SEQRES 7 A 267 GLU ILE ALA MSE PRO SER ARG LYS GLN ALA VAL LEU VAL SEQRES 8 A 267 ALA VAL GLU GLN THR ARG PRO GLN PRO ALA PRO CYS ASP SEQRES 9 A 267 LEU VAL TYR LEU PHE ALA PRO LEU LYS VAL GLY ARG LEU SEQRES 10 A 267 ASP TYR LEU VAL GLN LYS ALA VAL GLU MSE GLY ALA GLY SEQRES 11 A 267 VAL LEU GLN PRO VAL MSE THR GLN HIS VAL GLN GLY LYS SEQRES 12 A 267 ILE GLY SER LEU GLU ARG VAL ARG ALA ASN VAL ILE GLU SEQRES 13 A 267 ALA ALA GLU GLN CYS GLY VAL LEU GLY ILE PRO ALA VAL SEQRES 14 A 267 GLU GLU PRO ARG LYS LEU GLU ASP LEU LEU ILE ASP TRP SEQRES 15 A 267 PRO ARG ASP ARG ARG ILE VAL PHE CYS ASP GLU GLY ASN SEQRES 16 A 267 ASP SER GLN ASN PRO LEU PRO ILE LEU GLU GLY ILE ALA SEQRES 17 A 267 GLU ARG ARG LEU ALA LEU LEU ILE GLY PRO GLU GLY GLY SEQRES 18 A 267 PHE SER GLU ALA GLU ARG ASP LEU LEU ARG SER ARG ASP SEQRES 19 A 267 PHE VAL THR ALA ILE PRO LEU GLY PRO ARG ILE LEU ARG SEQRES 20 A 267 ALA ASP THR ALA ALA VAL ALA ALA MSE ALA VAL ILE GLN SEQRES 21 A 267 ALA THR LEU GLY ASP TRP ARG SEQRES 1 B 267 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 267 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ARG ALA ASN SEQRES 3 B 267 PHE ARG MSE GLN ARG LEU PHE ILE GLU ASN ALA LEU HIS SEQRES 4 B 267 ALA GLY ALA LYS HIS GLU ALA THR ARG GLU GLN PHE ASN SEQRES 5 B 267 TYR LEU ILE ASN VAL LEU ARG LEU GLY GLU GLY SER SER SEQRES 6 B 267 LEU LEU VAL PHE ASN GLY ARG ASP GLY GLU TRP ARG ALA SEQRES 7 B 267 GLU ILE ALA MSE PRO SER ARG LYS GLN ALA VAL LEU VAL SEQRES 8 B 267 ALA VAL GLU GLN THR ARG PRO GLN PRO ALA PRO CYS ASP SEQRES 9 B 267 LEU VAL TYR LEU PHE ALA PRO LEU LYS VAL GLY ARG LEU SEQRES 10 B 267 ASP TYR LEU VAL GLN LYS ALA VAL GLU MSE GLY ALA GLY SEQRES 11 B 267 VAL LEU GLN PRO VAL MSE THR GLN HIS VAL GLN GLY LYS SEQRES 12 B 267 ILE GLY SER LEU GLU ARG VAL ARG ALA ASN VAL ILE GLU SEQRES 13 B 267 ALA ALA GLU GLN CYS GLY VAL LEU GLY ILE PRO ALA VAL SEQRES 14 B 267 GLU GLU PRO ARG LYS LEU GLU ASP LEU LEU ILE ASP TRP SEQRES 15 B 267 PRO ARG ASP ARG ARG ILE VAL PHE CYS ASP GLU GLY ASN SEQRES 16 B 267 ASP SER GLN ASN PRO LEU PRO ILE LEU GLU GLY ILE ALA SEQRES 17 B 267 GLU ARG ARG LEU ALA LEU LEU ILE GLY PRO GLU GLY GLY SEQRES 18 B 267 PHE SER GLU ALA GLU ARG ASP LEU LEU ARG SER ARG ASP SEQRES 19 B 267 PHE VAL THR ALA ILE PRO LEU GLY PRO ARG ILE LEU ARG SEQRES 20 B 267 ALA ASP THR ALA ALA VAL ALA ALA MSE ALA VAL ILE GLN SEQRES 21 B 267 ALA THR LEU GLY ASP TRP ARG MODRES 4J3C MSE A 7 MET SELENOMETHIONINE MODRES 4J3C MSE A 60 MET SELENOMETHIONINE MODRES 4J3C MSE A 105 MET SELENOMETHIONINE MODRES 4J3C MSE A 114 MET SELENOMETHIONINE MODRES 4J3C MSE A 234 MET SELENOMETHIONINE MODRES 4J3C MSE B 7 MET SELENOMETHIONINE MODRES 4J3C MSE B 60 MET SELENOMETHIONINE MODRES 4J3C MSE B 105 MET SELENOMETHIONINE MODRES 4J3C MSE B 114 MET SELENOMETHIONINE MODRES 4J3C MSE B 234 MET SELENOMETHIONINE HET MSE A 7 8 HET MSE A 60 8 HET MSE A 105 8 HET MSE A 114 8 HET MSE A 234 8 HET MSE B 7 8 HET MSE B 60 8 HET MSE B 105 8 HET MSE B 114 8 HET MSE B 234 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 HOH *60(H2 O) HELIX 1 1 ARG A 94 MSE A 105 1 12 HELIX 2 2 SER A 124 GLY A 140 1 17 HELIX 3 3 LEU A 153 ASP A 159 1 7 HELIX 4 4 ASN A 177 GLY A 184 1 8 HELIX 5 5 SER A 201 ARG A 211 1 11 HELIX 6 6 ARG A 225 LEU A 241 1 17 HELIX 7 7 THR B 25 ASN B 34 1 10 HELIX 8 8 GLY B 93 MSE B 105 1 13 HELIX 9 9 SER B 124 GLY B 140 1 17 HELIX 10 10 LEU B 153 LEU B 157 1 5 HELIX 11 11 ASN B 177 GLY B 184 1 8 HELIX 12 12 SER B 201 SER B 210 1 10 HELIX 13 13 ARG B 225 LEU B 241 1 17 SHEET 1 A 5 ARG A 9 PHE A 11 0 SHEET 2 A 5 SER A 43 PHE A 47 1 O LEU A 45 N LEU A 10 SHEET 3 A 5 GLU A 53 ILE A 58 -1 O TRP A 54 N VAL A 46 SHEET 4 A 5 VAL A 67 ARG A 75 -1 O VAL A 69 N GLU A 57 SHEET 5 A 5 LYS A 21 GLU A 23 -1 N HIS A 22 O LEU A 68 SHEET 1 B 3 ALA A 146 VAL A 147 0 SHEET 2 B 3 VAL A 109 MSE A 114 1 N LEU A 110 O ALA A 146 SHEET 3 B 3 ARG A 151 LYS A 152 1 O ARG A 151 N MSE A 114 SHEET 1 C 6 ALA A 146 VAL A 147 0 SHEET 2 C 6 VAL A 109 MSE A 114 1 N LEU A 110 O ALA A 146 SHEET 3 C 6 VAL A 84 PHE A 87 1 N TYR A 85 O GLN A 111 SHEET 4 C 6 ARG A 189 ILE A 194 1 O LEU A 192 N LEU A 86 SHEET 5 C 6 ARG A 164 CYS A 169 1 N VAL A 167 O ALA A 191 SHEET 6 C 6 VAL A 214 ILE A 217 1 O THR A 215 N ILE A 166 SHEET 1 D 5 ARG B 9 PHE B 11 0 SHEET 2 D 5 SER B 43 PHE B 47 1 O LEU B 45 N LEU B 10 SHEET 3 D 5 GLU B 53 ALA B 59 -1 O ALA B 56 N LEU B 44 SHEET 4 D 5 VAL B 67 ARG B 75 -1 O VAL B 67 N ALA B 59 SHEET 5 D 5 LYS B 21 GLU B 23 -1 N HIS B 22 O LEU B 68 SHEET 1 E 3 ALA B 146 VAL B 147 0 SHEET 2 E 3 VAL B 109 MSE B 114 1 N LEU B 110 O ALA B 146 SHEET 3 E 3 ARG B 151 LYS B 152 1 O ARG B 151 N MSE B 114 SHEET 1 F 6 ALA B 146 VAL B 147 0 SHEET 2 F 6 VAL B 109 MSE B 114 1 N LEU B 110 O ALA B 146 SHEET 3 F 6 VAL B 84 PHE B 87 1 N TYR B 85 O GLN B 111 SHEET 4 F 6 LEU B 190 ILE B 194 1 O LEU B 192 N LEU B 86 SHEET 5 F 6 ARG B 165 PHE B 168 1 N VAL B 167 O LEU B 193 SHEET 6 F 6 VAL B 214 ALA B 216 1 O THR B 215 N ILE B 166 LINK C MSE A 7 N GLN A 8 1555 1555 1.33 LINK C ALA A 59 N MSE A 60 1555 1555 1.34 LINK C MSE A 60 N PRO A 61 1555 1555 1.35 LINK C GLU A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N GLY A 106 1555 1555 1.34 LINK C VAL A 113 N MSE A 114 1555 1555 1.34 LINK C MSE A 114 N THR A 115 1555 1555 1.33 LINK C ALA A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N ALA A 235 1555 1555 1.33 LINK C MSE B 7 N GLN B 8 1555 1555 1.33 LINK C ALA B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N PRO B 61 1555 1555 1.34 LINK C GLU B 104 N MSE B 105 1555 1555 1.33 LINK C MSE B 105 N GLY B 106 1555 1555 1.34 LINK C VAL B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N THR B 115 1555 1555 1.33 LINK C ALA B 233 N MSE B 234 1555 1555 1.33 LINK C MSE B 234 N ALA B 235 1555 1555 1.33 CISPEP 1 VAL A 35 LEU A 36 0 21.23 CRYST1 96.085 152.082 38.995 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025644 0.00000 HETATM 1 N MSE A 7 74.078 -7.740 20.547 1.00 47.05 N ANISOU 1 N MSE A 7 6036 4919 6922 375 1140 -445 N HETATM 2 CA MSE A 7 73.208 -8.296 19.468 1.00 46.64 C ANISOU 2 CA MSE A 7 6059 4898 6764 318 1252 -612 C HETATM 3 C MSE A 7 72.449 -7.152 18.806 1.00 43.96 C ANISOU 3 C MSE A 7 5745 4741 6216 249 1222 -641 C HETATM 4 O MSE A 7 72.076 -6.220 19.476 1.00 42.38 O ANISOU 4 O MSE A 7 5547 4602 5953 209 1107 -544 O HETATM 5 CB MSE A 7 72.194 -9.267 20.071 1.00 47.11 C ANISOU 5 CB MSE A 7 6211 4836 6854 274 1242 -660 C HETATM 6 CG MSE A 7 72.265 -10.687 19.506 1.00 51.85 C ANISOU 6 CG MSE A 7 6829 5295 7577 299 1373 -804 C HETATM 7 SE MSE A 7 71.155 -11.924 20.545 1.00 57.31 SE ANISOU 7 SE MSE A 7 7609 5760 8405 249 1394 -807 SE HETATM 8 CE MSE A 7 72.456 -13.369 20.777 1.00 58.38 C ANISOU 8 CE MSE A 7 7721 5661 8799 388 1509 -775 C