HEADER HYDROLASE/HYDROLASE INHIBITOR 05-FEB-13 4J3D TITLE PSEUDOMONAS AERUGINOSA LPXC IN COMPLEX WITH A HYDROXAMATE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE COMPND 3 DEACETYLASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: PROTEIN ENVA, UDP-3-O-ACYL-GLCNAC DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: LPXC, ENVA, PA4406; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LPXC, METALLOAMIDASE, UDP-3-O-(R-3-HYDROXYMYRISTOYL)-N- KEYWDS 2 ACETYLGLUCOSAMINE DEACETYLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.LAHIRI REVDAT 4 28-FEB-24 4J3D 1 REMARK LINK REVDAT 3 07-FEB-18 4J3D 1 REMARK REVDAT 2 01-MAY-13 4J3D 1 JRNL REVDAT 1 03-APR-13 4J3D 0 JRNL AUTH M.R.HALE,P.HILL,S.LAHIRI,M.D.MILLER,P.ROSS,R.ALM,N.GAO, JRNL AUTH 2 A.KUTSCHKE,M.JOHNSTONE,B.PRINCE,J.THRESHER,W.YANG JRNL TITL EXPLORING THE UDP POCKET OF LPXC THROUGH AMINO ACID ANALOGS. JRNL REF BIOORG.MED.CHEM.LETT. V. 23 2362 2013 JRNL REFN ISSN 0960-894X JRNL PMID 23499237 JRNL DOI 10.1016/J.BMCL.2013.02.055 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0046 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 156.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 31364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2281 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.240 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4580 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3066 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6178 ; 1.433 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7477 ; 0.899 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 569 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;34.078 ;24.327 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 799 ;16.822 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.151 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 707 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5103 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 915 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2833 ; 0.690 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1172 ; 0.143 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4566 ; 1.261 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1747 ; 2.018 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1612 ; 3.320 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 297 REMARK 3 RESIDUE RANGE : B 1 B 296 REMARK 3 RESIDUE RANGE : A 301 A 302 REMARK 3 RESIDUE RANGE : B 301 B 302 REMARK 3 RESIDUE RANGE : A 303 A 303 REMARK 3 RESIDUE RANGE : B 303 B 303 REMARK 3 RESIDUE RANGE : A 401 A 550 REMARK 3 RESIDUE RANGE : B 401 B 551 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4622 0.0615 1.1395 REMARK 3 T TENSOR REMARK 3 T11: 0.0004 T22: 0.0084 REMARK 3 T33: 0.0023 T12: 0.0009 REMARK 3 T13: 0.0008 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0198 L22: 0.1917 REMARK 3 L33: 0.0632 L12: 0.0151 REMARK 3 L13: -0.0027 L23: 0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0008 S13: -0.0034 REMARK 3 S21: 0.0008 S22: 0.0077 S23: 0.0070 REMARK 3 S31: -0.0034 S32: 0.0005 S33: -0.0065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4J3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 156.878 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-18% P3350, 15-75MM CACL2, 4% REMARK 280 ISOPROPANOL AND 0.1M HEPES PH 7.5 , VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 78.43900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 160 REMARK 465 ASP A 161 REMARK 465 HIS A 162 REMARK 465 PRO A 163 REMARK 465 VAL A 164 REMARK 465 PHE A 165 REMARK 465 ARG A 166 REMARK 465 GLY A 167 REMARK 465 ARG A 168 REMARK 465 THR A 169 REMARK 465 PHE B 160 REMARK 465 ASP B 161 REMARK 465 HIS B 162 REMARK 465 PRO B 163 REMARK 465 VAL B 164 REMARK 465 PHE B 165 REMARK 465 ARG B 166 REMARK 465 GLY B 167 REMARK 465 ARG B 168 REMARK 465 THR B 169 REMARK 465 MET B 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 198 O HOH A 523 2.03 REMARK 500 N ASP A 45 O HOH A 540 2.14 REMARK 500 NH2 ARG B 187 O HOH B 411 2.16 REMARK 500 O HOH A 517 O HOH A 546 2.17 REMARK 500 OG1 THR A 42 O HOH A 489 2.17 REMARK 500 OE2 GLU A 77 O32 1JS A 303 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 49 NZ LYS B 29 2555 1.83 REMARK 500 OE1 GLU A 49 NZ LYS B 29 2555 1.86 REMARK 500 OE2 GLU A 94 OE2 GLU B 94 2555 2.08 REMARK 500 CD GLU A 49 NZ LYS B 29 2555 2.10 REMARK 500 NH1 ARG A 221 OD1 ASP B 196 1556 2.11 REMARK 500 NH2 ARG A 187 O HOH A 479 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 49 CB GLU A 49 CG 0.182 REMARK 500 GLU A 49 CG GLU A 49 CD 0.101 REMARK 500 GLU B 49 CB GLU B 49 CG 0.178 REMARK 500 GLU B 49 CD GLU B 49 OE2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 86.42 58.09 REMARK 500 THR A 60 28.87 -145.21 REMARK 500 THR A 61 -88.98 -52.69 REMARK 500 MET A 103 -125.66 51.85 REMARK 500 GLU A 139 118.46 -165.42 REMARK 500 PHE A 149 129.33 -171.74 REMARK 500 ASP A 218 -101.06 -76.31 REMARK 500 ASN A 220 -57.20 -170.32 REMARK 500 THR B 61 -83.12 -126.76 REMARK 500 MET B 103 -127.77 52.91 REMARK 500 GLU B 139 102.90 -161.27 REMARK 500 VAL B 185 -37.74 -132.28 REMARK 500 ASP B 218 50.28 -111.45 REMARK 500 ASN B 220 -80.44 175.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 62 O REMARK 620 2 HIS A 264 NE2 100.2 REMARK 620 3 1JS A 303 N31 92.3 112.2 REMARK 620 4 HOH A 402 O 97.4 118.3 125.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 ASP A 241 OD1 95.5 REMARK 620 3 1JS A 303 O30 111.8 149.2 REMARK 620 4 1JS A 303 O32 105.5 85.9 73.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 62 O REMARK 620 2 HIS B 264 NE2 99.7 REMARK 620 3 1JS B 303 N31 94.5 103.0 REMARK 620 4 HOH B 402 O 97.8 121.7 130.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 NE2 REMARK 620 2 HIS B 237 NE2 92.8 REMARK 620 3 ASP B 241 OD1 96.0 99.4 REMARK 620 4 1JS B 303 O30 110.0 97.7 147.9 REMARK 620 5 1JS B 303 O32 104.1 162.4 83.7 72.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1JS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1JS B 303 DBREF 4J3D A 1 297 UNP P47205 LPXC_PSEAE 1 297 DBREF 4J3D B 1 297 UNP P47205 LPXC_PSEAE 1 297 SEQRES 1 A 297 MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG ALA SEQRES 2 A 297 THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR LEU SEQRES 3 A 297 THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL PHE SEQRES 4 A 297 CYS ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO ALA SEQRES 5 A 297 ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR THR SEQRES 6 A 297 LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU HIS SEQRES 7 A 297 LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN ALA SEQRES 8 A 297 TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET ASP SEQRES 9 A 297 GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER ALA SEQRES 10 A 297 GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE ARG SEQRES 11 A 297 ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS ARG SEQRES 12 A 297 ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER PHE SEQRES 13 A 297 GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG THR SEQRES 14 A 297 GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE VAL SEQRES 15 A 297 LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET ARG SEQRES 16 A 297 ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU GLY SEQRES 17 A 297 GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN ARG SEQRES 18 A 297 VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU PHE SEQRES 19 A 297 VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU TYR SEQRES 20 A 297 LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY PHE SEQRES 21 A 297 LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG THR SEQRES 22 A 297 LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR PHE SEQRES 23 A 297 GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET SEQRES 1 B 297 MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG ALA SEQRES 2 B 297 THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR LEU SEQRES 3 B 297 THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL PHE SEQRES 4 B 297 CYS ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO ALA SEQRES 5 B 297 ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR THR SEQRES 6 B 297 LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU HIS SEQRES 7 B 297 LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN ALA SEQRES 8 B 297 TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET ASP SEQRES 9 B 297 GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER ALA SEQRES 10 B 297 GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE ARG SEQRES 11 B 297 ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS ARG SEQRES 12 B 297 ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER PHE SEQRES 13 B 297 GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG THR SEQRES 14 B 297 GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE VAL SEQRES 15 B 297 LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET ARG SEQRES 16 B 297 ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU GLY SEQRES 17 B 297 GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN ARG SEQRES 18 B 297 VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU PHE SEQRES 19 B 297 VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU TYR SEQRES 20 B 297 LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY PHE SEQRES 21 B 297 LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG THR SEQRES 22 B 297 LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR PHE SEQRES 23 B 297 GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET HET ZN A 301 1 HET ZN A 302 1 HET 1JS A 303 31 HET ZN B 301 1 HET ZN B 302 1 HET 1JS B 303 31 HETNAM ZN ZINC ION HETNAM 1JS N~1~-HYDROXY-N~5~-(3-HYDROXYPROPYL)-N~2~-[4- HETNAM 2 1JS (PHENYLETHYNYL)BENZOYL]-L-GLUTAMAMIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 1JS 2(C23 H25 N3 O5) FORMUL 9 HOH *301(H2 O) HELIX 1 1 ARG A 53 GLU A 55 5 3 HELIX 2 2 VAL A 76 GLY A 87 1 12 HELIX 3 3 ALA A 107 GLY A 118 1 12 HELIX 4 4 SER A 180 VAL A 185 1 6 HELIX 5 5 MET A 194 GLN A 203 1 10 HELIX 6 6 ASP A 232 LEU A 248 1 17 HELIX 7 7 GLY A 263 ASP A 277 1 15 HELIX 8 8 ARG B 53 GLU B 55 5 3 HELIX 9 9 VAL B 76 LEU B 86 1 11 HELIX 10 10 ALA B 107 GLY B 118 1 12 HELIX 11 11 SER B 180 VAL B 185 1 6 HELIX 12 12 MET B 194 GLN B 203 1 10 HELIX 13 13 ASP B 232 TYR B 247 1 16 HELIX 14 14 LEU B 248 GLY B 250 5 3 HELIX 15 15 GLY B 263 ASP B 277 1 15 SHEET 1 A 2 LYS A 3 LEU A 7 0 SHEET 2 A 2 LEU A 119 ALA A 125 -1 O GLN A 122 N GLN A 4 SHEET 1 B 5 ILE A 11 VAL A 16 0 SHEET 2 B 5 LYS A 23 PRO A 30 -1 O LEU A 28 N ILE A 11 SHEET 3 B 5 ALA A 91 LEU A 95 -1 O GLU A 94 N THR A 27 SHEET 4 B 5 ILE A 37 ARG A 41 1 N VAL A 38 O VAL A 93 SHEET 5 B 5 VAL A 48 PRO A 51 -1 O ILE A 50 N PHE A 39 SHEET 1 C 3 VAL A 57 GLU A 59 0 SHEET 2 C 3 THR A 65 LYS A 68 -1 O THR A 65 N GLY A 58 SHEET 3 C 3 VAL A 71 ASP A 74 -1 O VAL A 73 N LEU A 66 SHEET 1 D 5 VAL A 135 GLU A 139 0 SHEET 2 D 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 D 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 D 5 PHE A 152 GLU A 157 1 N SER A 155 O GLY A 259 SHEET 5 D 5 GLN A 171 ASP A 175 -1 O VAL A 174 N VAL A 154 SHEET 1 E 5 VAL A 135 GLU A 139 0 SHEET 2 E 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 E 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 E 5 PHE A 128 ILE A 131 1 N ILE A 129 O ILE A 254 SHEET 5 E 5 TRP A 281 VAL A 284 -1 O GLU A 282 N ARG A 130 SHEET 1 F 2 PHE A 191 PHE A 193 0 SHEET 2 F 2 ILE A 215 VAL A 217 1 O ILE A 215 N GLY A 192 SHEET 1 G 2 LYS B 3 LEU B 7 0 SHEET 2 G 2 LEU B 119 ALA B 125 -1 O GLN B 122 N GLN B 4 SHEET 1 H 5 ILE B 11 VAL B 16 0 SHEET 2 H 5 LYS B 23 PRO B 30 -1 O LEU B 26 N ALA B 13 SHEET 3 H 5 ALA B 91 LEU B 95 -1 O GLU B 94 N THR B 27 SHEET 4 H 5 ILE B 37 ARG B 41 1 N CYS B 40 O LEU B 95 SHEET 5 H 5 VAL B 48 PRO B 51 -1 O VAL B 48 N ARG B 41 SHEET 1 I 3 VAL B 57 THR B 60 0 SHEET 2 I 3 THR B 64 LYS B 68 -1 O THR B 65 N GLY B 58 SHEET 3 I 3 VAL B 71 VAL B 73 -1 O VAL B 71 N LYS B 68 SHEET 1 J 5 VAL B 135 GLU B 139 0 SHEET 2 J 5 LYS B 142 VAL B 147 -1 O PHE B 146 N VAL B 135 SHEET 3 J 5 SER B 252 PHE B 260 -1 O PHE B 260 N ARG B 143 SHEET 4 J 5 PHE B 152 GLU B 157 1 N LYS B 153 O PHE B 257 SHEET 5 J 5 GLN B 171 ASP B 175 -1 O VAL B 174 N VAL B 154 SHEET 1 K 5 VAL B 135 GLU B 139 0 SHEET 2 K 5 LYS B 142 VAL B 147 -1 O PHE B 146 N VAL B 135 SHEET 3 K 5 SER B 252 PHE B 260 -1 O PHE B 260 N ARG B 143 SHEET 4 K 5 PHE B 128 ILE B 131 1 N ILE B 129 O ILE B 254 SHEET 5 K 5 TRP B 281 VAL B 284 -1 O VAL B 284 N PHE B 128 SHEET 1 L 2 PHE B 191 PHE B 193 0 SHEET 2 L 2 ILE B 215 VAL B 217 1 O ILE B 215 N GLY B 192 LINK O MET A 62 ZN ZN A 302 1555 1555 2.21 LINK NE2 HIS A 78 ZN ZN A 301 1555 1555 2.08 LINK OD1 ASP A 241 ZN ZN A 301 1555 1555 2.18 LINK NE2 HIS A 264 ZN ZN A 302 1555 1555 2.01 LINK ZN ZN A 301 O30 1JS A 303 1555 1555 2.09 LINK ZN ZN A 301 O32 1JS A 303 1555 1555 2.37 LINK ZN ZN A 302 N31 1JS A 303 1555 1555 1.91 LINK ZN ZN A 302 O HOH A 402 1555 1555 2.26 LINK O MET B 62 ZN ZN B 302 1555 1555 2.25 LINK NE2 HIS B 78 ZN ZN B 301 1555 1555 2.11 LINK NE2 HIS B 237 ZN ZN B 301 1555 1555 2.16 LINK OD1 ASP B 241 ZN ZN B 301 1555 1555 2.04 LINK NE2 HIS B 264 ZN ZN B 302 1555 1555 2.17 LINK ZN ZN B 301 O30 1JS B 303 1555 1555 2.09 LINK ZN ZN B 301 O32 1JS B 303 1555 1555 2.39 LINK ZN ZN B 302 N31 1JS B 303 1555 1555 1.87 LINK ZN ZN B 302 O HOH B 402 1555 1555 2.30 CISPEP 1 ASP A 45 PRO A 46 0 0.46 CISPEP 2 ASP B 45 PRO B 46 0 -2.20 SITE 1 AC1 4 HIS A 78 HIS A 237 ASP A 241 1JS A 303 SITE 1 AC2 4 MET A 62 HIS A 264 1JS A 303 HOH A 402 SITE 1 AC3 19 MET A 62 GLU A 77 HIS A 78 THR A 190 SITE 2 AC3 19 PHE A 191 GLY A 192 PHE A 193 ASP A 196 SITE 3 AC3 19 ILE A 197 ARG A 201 GLY A 209 SER A 210 SITE 4 AC3 19 VAL A 216 HIS A 237 LYS A 238 ASP A 241 SITE 5 AC3 19 HIS A 264 ZN A 301 ZN A 302 SITE 1 AC4 4 HIS B 78 HIS B 237 ASP B 241 1JS B 303 SITE 1 AC5 4 MET B 62 HIS B 264 1JS B 303 HOH B 402 SITE 1 AC6 20 HIS B 19 MET B 62 GLU B 77 HIS B 78 SITE 2 AC6 20 THR B 190 PHE B 191 PHE B 193 ASP B 196 SITE 3 AC6 20 ILE B 197 LEU B 200 ARG B 201 GLY B 209 SITE 4 AC6 20 SER B 210 VAL B 216 HIS B 237 LYS B 238 SITE 5 AC6 20 ASP B 241 HIS B 264 ZN B 301 ZN B 302 CRYST1 35.762 156.878 49.334 90.00 102.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027963 0.000000 0.006150 0.00000 SCALE2 0.000000 0.006374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020754 0.00000