HEADER VIRAL PROTEIN 07-FEB-13 4J4S TITLE TRIPLE MUTANT SFTAVN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SFTSVN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHLEBOVIRUS; SOURCE 3 ORGANISM_TAXID: 1205901; SOURCE 4 STRAIN: JS2010-018; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOCAPSID PROTEIN, NUCLEOPROTEIN, NUCLEOCAPSID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.JIAO,S.OUYANG,M.LIANG,F.NIU,N.SHAW,W.WU,W.DING,C.JIN,Y.ZHU,F.ZHANG, AUTHOR 2 T.WANG,C.LI,X.ZUO,C.H.LUAN,D.LI,Z.J.LIU REVDAT 3 08-NOV-23 4J4S 1 REMARK SEQADV LINK REVDAT 2 10-JUL-13 4J4S 1 JRNL REVDAT 1 22-MAY-13 4J4S 0 JRNL AUTH L.JIAO,S.OUYANG,M.LIANG,F.NIU,N.SHAW,W.WU,W.DING,C.JIN, JRNL AUTH 2 Y.PENG,Y.ZHU,F.ZHANG,T.WANG,C.LI,X.ZUO,C.H.LUAN,D.LI,Z.J.LIU JRNL TITL STRUCTURE OF SEVERE FEVER WITH THROMBOCYTOPENIA SYNDROME JRNL TITL 2 VIRUS NUCLEOCAPSID PROTEIN IN COMPLEX WITH SURAMIN REVEALS JRNL TITL 3 THERAPEUTIC POTENTIAL JRNL REF J.VIROL. V. 87 6829 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23576501 JRNL DOI 10.1128/JVI.00672-13 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 42171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8163 - 5.8806 1.00 3088 154 0.1701 0.2036 REMARK 3 2 5.8806 - 4.6693 1.00 2988 148 0.1866 0.2234 REMARK 3 3 4.6693 - 4.0796 1.00 2948 147 0.1670 0.2114 REMARK 3 4 4.0796 - 3.7068 1.00 2931 146 0.1918 0.2542 REMARK 3 5 3.7068 - 3.4412 1.00 2908 145 0.2073 0.2691 REMARK 3 6 3.4412 - 3.2384 1.00 2941 146 0.2313 0.3019 REMARK 3 7 3.2384 - 3.0763 1.00 2915 145 0.2539 0.3304 REMARK 3 8 3.0763 - 2.9424 1.00 2905 144 0.2668 0.3253 REMARK 3 9 2.9424 - 2.8291 1.00 2909 145 0.2647 0.3303 REMARK 3 10 2.8291 - 2.7315 1.00 2890 145 0.2534 0.3262 REMARK 3 11 2.7315 - 2.6461 1.00 2876 142 0.2573 0.3804 REMARK 3 12 2.6461 - 2.5705 1.00 2899 144 0.2543 0.3408 REMARK 3 13 2.5705 - 2.5028 0.99 2867 142 0.2655 0.3764 REMARK 3 14 2.5028 - 2.4418 0.73 2108 105 0.2856 0.3410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 7578 REMARK 3 ANGLE : 1.467 10277 REMARK 3 CHIRALITY : 0.104 1169 REMARK 3 PLANARITY : 0.010 1314 REMARK 3 DIHEDRAL : 16.747 2795 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.1056 -30.7575 -25.4299 REMARK 3 T TENSOR REMARK 3 T11: 0.3136 T22: 0.3433 REMARK 3 T33: 0.3522 T12: 0.0217 REMARK 3 T13: -0.0179 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: -0.1299 L22: 0.0495 REMARK 3 L33: 0.4545 L12: 0.1380 REMARK 3 L13: 0.1661 L23: 0.0445 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.0120 S13: 0.0405 REMARK 3 S21: 0.0012 S22: -0.0377 S23: 0.0468 REMARK 3 S31: 0.0723 S32: 0.0535 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.442 REMARK 200 RESOLUTION RANGE LOW (A) : 43.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4J4R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M NACL, 0.1M NAAC, 0.2M LI2SO4, PH REMARK 280 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.70400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 110.70400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.74450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.23950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.74450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.23950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 110.70400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.74450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.23950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 110.70400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.74450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.23950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 GLY B 187 REMARK 465 ALA B 188 REMARK 465 SER B 189 REMARK 465 LYS B 190 REMARK 465 THR B 191 REMARK 465 GLU B 192 REMARK 465 VAL B 193 REMARK 465 TYR B 194 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 VAL C 183 REMARK 465 LYS C 184 REMARK 465 MET C 185 REMARK 465 ARG C 186 REMARK 465 GLY C 187 REMARK 465 ALA C 188 REMARK 465 SER C 189 REMARK 465 LYS C 190 REMARK 465 THR C 191 REMARK 465 GLU C 192 REMARK 465 VAL C 193 REMARK 465 TYR C 194 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 182 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 38 CD1 LEU B 42 1.39 REMARK 500 CB ALA A 96 NH2 ARG A 106 1.47 REMARK 500 OG1 THR D 113 O HOH D 403 1.97 REMARK 500 O ILE D 102 O HOH D 406 2.08 REMARK 500 OE1 GLN D 109 OG SER D 151 2.13 REMARK 500 N VAL D 93 O HOH D 406 2.14 REMARK 500 OD1 ASN D 17 O HOH D 404 2.15 REMARK 500 O VAL D 93 O HOH D 406 2.16 REMARK 500 O GLY A 32 NH1 ARG A 99 2.17 REMARK 500 OD1 ASN A 244 O HOH A 433 2.19 REMARK 500 OD2 ASP C 53 OH TYR C 90 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 48 O VAL D 208 5455 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 146 CB CYS A 146 SG -0.107 REMARK 500 TYR C 140 CE1 TYR C 140 CZ -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 111 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 PRO C 141 C - N - CD ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 100 -13.45 74.95 REMARK 500 ASN B 244 30.81 -97.69 REMARK 500 GLU C 124 -8.19 -58.97 REMARK 500 SER D 76 170.51 -54.97 REMARK 500 ASN D 244 42.80 -94.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 301 DBREF 4J4S A 1 245 UNP I6WJ72 I6WJ72_9VIRU 1 245 DBREF 4J4S B 1 245 UNP I6WJ72 I6WJ72_9VIRU 1 245 DBREF 4J4S C 1 245 UNP I6WJ72 I6WJ72_9VIRU 1 245 DBREF 4J4S D 1 245 UNP I6WJ72 I6WJ72_9VIRU 1 245 SEQADV 4J4S SER A -2 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ASN A -1 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ALA A 0 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ASP A 64 UNP I6WJ72 ARG 64 ENGINEERED MUTATION SEQADV 4J4S ASP A 67 UNP I6WJ72 LYS 67 ENGINEERED MUTATION SEQADV 4J4S ASP A 74 UNP I6WJ72 LYS 74 ENGINEERED MUTATION SEQADV 4J4S SER B -2 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ASN B -1 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ALA B 0 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ASP B 64 UNP I6WJ72 ARG 64 ENGINEERED MUTATION SEQADV 4J4S ASP B 67 UNP I6WJ72 LYS 67 ENGINEERED MUTATION SEQADV 4J4S ASP B 74 UNP I6WJ72 LYS 74 ENGINEERED MUTATION SEQADV 4J4S SER C -2 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ASN C -1 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ALA C 0 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ASP C 64 UNP I6WJ72 ARG 64 ENGINEERED MUTATION SEQADV 4J4S ASP C 67 UNP I6WJ72 LYS 67 ENGINEERED MUTATION SEQADV 4J4S ASP C 74 UNP I6WJ72 LYS 74 ENGINEERED MUTATION SEQADV 4J4S SER D -2 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ASN D -1 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ALA D 0 UNP I6WJ72 EXPRESSION TAG SEQADV 4J4S ASP D 64 UNP I6WJ72 ARG 64 ENGINEERED MUTATION SEQADV 4J4S ASP D 67 UNP I6WJ72 LYS 67 ENGINEERED MUTATION SEQADV 4J4S ASP D 74 UNP I6WJ72 LYS 74 ENGINEERED MUTATION SEQRES 1 A 248 SER ASN ALA MET SER GLU TRP SER ARG ILE ALA VAL GLU SEQRES 2 A 248 PHE GLY GLU GLN GLN LEU ASN LEU THR GLU LEU GLU ASP SEQRES 3 A 248 PHE ALA ARG GLU LEU ALA TYR GLU GLY LEU ASP PRO ALA SEQRES 4 A 248 LEU ILE ILE LYS LYS LEU LYS GLU THR GLY GLY ASP ASP SEQRES 5 A 248 TRP VAL LYS ASP THR LYS PHE ILE ILE VAL PHE ALA LEU SEQRES 6 A 248 THR ASP GLY ASN ASP ILE VAL LYS ALA SER GLY ASP MET SEQRES 7 A 248 SER ASN SER GLY SER LYS ARG LEU MET ALA LEU GLN GLU SEQRES 8 A 248 LYS TYR GLY LEU VAL GLU ARG ALA GLU THR ARG LEU SER SEQRES 9 A 248 ILE THR PRO VAL ARG VAL ALA GLN SER LEU PRO THR TRP SEQRES 10 A 248 THR CYS ALA ALA ALA ALA ALA LEU LYS GLU TYR LEU PRO SEQRES 11 A 248 VAL GLY PRO ALA VAL MET ASN LEU LYS VAL GLU ASN TYR SEQRES 12 A 248 PRO PRO GLU MET MET CYS MET ALA PHE GLY SER LEU ILE SEQRES 13 A 248 PRO THR ALA GLY VAL SER GLU ALA THR THR LYS THR LEU SEQRES 14 A 248 MET GLU ALA TYR SER LEU TRP GLN ASP ALA PHE THR LYS SEQRES 15 A 248 THR ILE ASN VAL LYS MET ARG GLY ALA SER LYS THR GLU SEQRES 16 A 248 VAL TYR ASN SER PHE ARG ASP PRO LEU HIS ALA ALA VAL SEQRES 17 A 248 ASN SER VAL PHE PHE PRO ASN ASP VAL ARG VAL LYS TRP SEQRES 18 A 248 LEU LYS ALA LYS GLY ILE LEU GLY PRO ASP GLY VAL PRO SEQRES 19 A 248 SER ARG ALA ALA GLU VAL ALA ALA ALA ALA TYR ARG ASN SEQRES 20 A 248 LEU SEQRES 1 B 248 SER ASN ALA MET SER GLU TRP SER ARG ILE ALA VAL GLU SEQRES 2 B 248 PHE GLY GLU GLN GLN LEU ASN LEU THR GLU LEU GLU ASP SEQRES 3 B 248 PHE ALA ARG GLU LEU ALA TYR GLU GLY LEU ASP PRO ALA SEQRES 4 B 248 LEU ILE ILE LYS LYS LEU LYS GLU THR GLY GLY ASP ASP SEQRES 5 B 248 TRP VAL LYS ASP THR LYS PHE ILE ILE VAL PHE ALA LEU SEQRES 6 B 248 THR ASP GLY ASN ASP ILE VAL LYS ALA SER GLY ASP MET SEQRES 7 B 248 SER ASN SER GLY SER LYS ARG LEU MET ALA LEU GLN GLU SEQRES 8 B 248 LYS TYR GLY LEU VAL GLU ARG ALA GLU THR ARG LEU SER SEQRES 9 B 248 ILE THR PRO VAL ARG VAL ALA GLN SER LEU PRO THR TRP SEQRES 10 B 248 THR CYS ALA ALA ALA ALA ALA LEU LYS GLU TYR LEU PRO SEQRES 11 B 248 VAL GLY PRO ALA VAL MET ASN LEU LYS VAL GLU ASN TYR SEQRES 12 B 248 PRO PRO GLU MET MET CYS MET ALA PHE GLY SER LEU ILE SEQRES 13 B 248 PRO THR ALA GLY VAL SER GLU ALA THR THR LYS THR LEU SEQRES 14 B 248 MET GLU ALA TYR SER LEU TRP GLN ASP ALA PHE THR LYS SEQRES 15 B 248 THR ILE ASN VAL LYS MET ARG GLY ALA SER LYS THR GLU SEQRES 16 B 248 VAL TYR ASN SER PHE ARG ASP PRO LEU HIS ALA ALA VAL SEQRES 17 B 248 ASN SER VAL PHE PHE PRO ASN ASP VAL ARG VAL LYS TRP SEQRES 18 B 248 LEU LYS ALA LYS GLY ILE LEU GLY PRO ASP GLY VAL PRO SEQRES 19 B 248 SER ARG ALA ALA GLU VAL ALA ALA ALA ALA TYR ARG ASN SEQRES 20 B 248 LEU SEQRES 1 C 248 SER ASN ALA MET SER GLU TRP SER ARG ILE ALA VAL GLU SEQRES 2 C 248 PHE GLY GLU GLN GLN LEU ASN LEU THR GLU LEU GLU ASP SEQRES 3 C 248 PHE ALA ARG GLU LEU ALA TYR GLU GLY LEU ASP PRO ALA SEQRES 4 C 248 LEU ILE ILE LYS LYS LEU LYS GLU THR GLY GLY ASP ASP SEQRES 5 C 248 TRP VAL LYS ASP THR LYS PHE ILE ILE VAL PHE ALA LEU SEQRES 6 C 248 THR ASP GLY ASN ASP ILE VAL LYS ALA SER GLY ASP MET SEQRES 7 C 248 SER ASN SER GLY SER LYS ARG LEU MET ALA LEU GLN GLU SEQRES 8 C 248 LYS TYR GLY LEU VAL GLU ARG ALA GLU THR ARG LEU SER SEQRES 9 C 248 ILE THR PRO VAL ARG VAL ALA GLN SER LEU PRO THR TRP SEQRES 10 C 248 THR CYS ALA ALA ALA ALA ALA LEU LYS GLU TYR LEU PRO SEQRES 11 C 248 VAL GLY PRO ALA VAL MET ASN LEU LYS VAL GLU ASN TYR SEQRES 12 C 248 PRO PRO GLU MET MET CYS MET ALA PHE GLY SER LEU ILE SEQRES 13 C 248 PRO THR ALA GLY VAL SER GLU ALA THR THR LYS THR LEU SEQRES 14 C 248 MET GLU ALA TYR SER LEU TRP GLN ASP ALA PHE THR LYS SEQRES 15 C 248 THR ILE ASN VAL LYS MET ARG GLY ALA SER LYS THR GLU SEQRES 16 C 248 VAL TYR ASN SER PHE ARG ASP PRO LEU HIS ALA ALA VAL SEQRES 17 C 248 ASN SER VAL PHE PHE PRO ASN ASP VAL ARG VAL LYS TRP SEQRES 18 C 248 LEU LYS ALA LYS GLY ILE LEU GLY PRO ASP GLY VAL PRO SEQRES 19 C 248 SER ARG ALA ALA GLU VAL ALA ALA ALA ALA TYR ARG ASN SEQRES 20 C 248 LEU SEQRES 1 D 248 SER ASN ALA MET SER GLU TRP SER ARG ILE ALA VAL GLU SEQRES 2 D 248 PHE GLY GLU GLN GLN LEU ASN LEU THR GLU LEU GLU ASP SEQRES 3 D 248 PHE ALA ARG GLU LEU ALA TYR GLU GLY LEU ASP PRO ALA SEQRES 4 D 248 LEU ILE ILE LYS LYS LEU LYS GLU THR GLY GLY ASP ASP SEQRES 5 D 248 TRP VAL LYS ASP THR LYS PHE ILE ILE VAL PHE ALA LEU SEQRES 6 D 248 THR ASP GLY ASN ASP ILE VAL LYS ALA SER GLY ASP MET SEQRES 7 D 248 SER ASN SER GLY SER LYS ARG LEU MET ALA LEU GLN GLU SEQRES 8 D 248 LYS TYR GLY LEU VAL GLU ARG ALA GLU THR ARG LEU SER SEQRES 9 D 248 ILE THR PRO VAL ARG VAL ALA GLN SER LEU PRO THR TRP SEQRES 10 D 248 THR CYS ALA ALA ALA ALA ALA LEU LYS GLU TYR LEU PRO SEQRES 11 D 248 VAL GLY PRO ALA VAL MET ASN LEU LYS VAL GLU ASN TYR SEQRES 12 D 248 PRO PRO GLU MET MET CYS MET ALA PHE GLY SER LEU ILE SEQRES 13 D 248 PRO THR ALA GLY VAL SER GLU ALA THR THR LYS THR LEU SEQRES 14 D 248 MET GLU ALA TYR SER LEU TRP GLN ASP ALA PHE THR LYS SEQRES 15 D 248 THR ILE ASN VAL LYS MET ARG GLY ALA SER LYS THR GLU SEQRES 16 D 248 VAL TYR ASN SER PHE ARG ASP PRO LEU HIS ALA ALA VAL SEQRES 17 D 248 ASN SER VAL PHE PHE PRO ASN ASP VAL ARG VAL LYS TRP SEQRES 18 D 248 LEU LYS ALA LYS GLY ILE LEU GLY PRO ASP GLY VAL PRO SEQRES 19 D 248 SER ARG ALA ALA GLU VAL ALA ALA ALA ALA TYR ARG ASN SEQRES 20 D 248 LEU HET NA A 301 1 HET NA A 302 1 HET NA A 303 1 HET NA B 301 1 HET NA B 302 1 HET NA B 303 1 HET NA C 301 1 HET NA D 301 1 HETNAM NA SODIUM ION FORMUL 5 NA 8(NA 1+) FORMUL 13 HOH *78(H2 O) HELIX 1 1 SER A 2 GLY A 12 1 11 HELIX 2 2 ASN A 17 LEU A 28 1 12 HELIX 3 3 ASP A 34 GLY A 47 1 14 HELIX 4 4 ASP A 49 GLY A 65 1 17 HELIX 5 5 ASP A 67 GLY A 73 1 7 HELIX 6 6 SER A 76 GLY A 91 1 16 HELIX 7 7 THR A 103 LEU A 111 1 9 HELIX 8 8 LEU A 111 LEU A 122 1 12 HELIX 9 9 LYS A 123 LEU A 126 5 4 HELIX 10 10 GLY A 129 VAL A 137 1 9 HELIX 11 11 PRO A 141 MET A 145 5 5 HELIX 12 12 ALA A 148 LEU A 152 5 5 HELIX 13 13 SER A 159 ASN A 182 1 24 HELIX 14 14 VAL A 183 ALA A 188 5 6 HELIX 15 15 SER A 189 SER A 207 1 19 HELIX 16 16 PRO A 211 LYS A 222 1 12 HELIX 17 17 SER A 232 ASN A 244 1 13 HELIX 18 18 SER B 2 GLU B 13 1 12 HELIX 19 19 ASN B 17 ALA B 29 1 13 HELIX 20 20 ASP B 34 GLY B 47 1 14 HELIX 21 21 ASP B 49 GLY B 65 1 17 HELIX 22 22 ASP B 67 MET B 75 1 9 HELIX 23 23 SER B 76 GLY B 91 1 16 HELIX 24 24 THR B 103 LEU B 111 1 9 HELIX 25 25 LEU B 111 LEU B 122 1 12 HELIX 26 26 LYS B 123 LEU B 126 5 4 HELIX 27 27 GLY B 129 VAL B 137 1 9 HELIX 28 28 ALA B 148 ILE B 153 5 6 HELIX 29 29 SER B 159 ASN B 182 1 24 HELIX 30 30 PRO B 211 LYS B 222 1 12 HELIX 31 31 SER B 232 ASN B 244 1 13 HELIX 32 32 SER C 2 GLY C 12 1 11 HELIX 33 33 ASN C 17 ALA C 29 1 13 HELIX 34 34 ASP C 34 GLY C 46 1 13 HELIX 35 35 ASP C 49 GLY C 65 1 17 HELIX 36 36 ASP C 67 GLY C 73 1 7 HELIX 37 37 SER C 76 GLY C 91 1 16 HELIX 38 38 THR C 103 LEU C 111 1 9 HELIX 39 39 LEU C 111 LEU C 122 1 12 HELIX 40 40 LYS C 123 LEU C 126 5 4 HELIX 41 41 GLY C 129 ASN C 134 1 6 HELIX 42 42 PRO C 141 MET C 145 5 5 HELIX 43 43 ALA C 148 ILE C 153 5 6 HELIX 44 44 SER C 159 LYS C 179 1 21 HELIX 45 45 PRO C 211 LYS C 222 1 12 HELIX 46 46 SER C 232 ASN C 244 1 13 HELIX 47 47 SER D 2 GLY D 12 1 11 HELIX 48 48 ASN D 17 LEU D 28 1 12 HELIX 49 49 ASP D 34 GLY D 47 1 14 HELIX 50 50 ASP D 49 GLY D 65 1 17 HELIX 51 51 ASP D 67 MET D 75 1 9 HELIX 52 52 SER D 76 GLY D 91 1 16 HELIX 53 53 THR D 103 LEU D 111 1 9 HELIX 54 54 LEU D 111 LEU D 122 1 12 HELIX 55 55 LYS D 123 LEU D 126 5 4 HELIX 56 56 GLY D 129 ASN D 134 1 6 HELIX 57 57 PRO D 141 MET D 145 5 5 HELIX 58 58 PHE D 149 ILE D 153 5 5 HELIX 59 59 SER D 159 ASN D 182 1 24 HELIX 60 60 VAL D 183 ALA D 188 5 6 HELIX 61 61 SER D 189 ASN D 206 1 18 HELIX 62 62 PRO D 211 LYS D 222 1 12 HELIX 63 63 SER D 232 ASN D 244 1 13 LINK OE2 GLU A 192 NA NA A 303 1555 1555 2.63 LINK NA NA A 302 O HOH B 401 1555 1555 2.93 LINK NA NA B 303 O HOH B 414 1555 1555 2.72 CISPEP 1 ASN A 244 LEU A 245 0 5.95 SITE 1 AC1 4 GLY A 226 PRO A 227 ASP A 228 VAL A 230 SITE 1 AC2 4 LYS A 55 ASN B 17 LEU B 21 HOH B 401 SITE 1 AC3 5 GLU A 192 ALA B 176 LYS B 179 THR B 180 SITE 2 AC3 5 NA B 303 SITE 1 AC4 2 GLY B 226 ASP B 228 SITE 1 AC5 2 ARG B 26 PRO C 227 SITE 1 AC6 4 GLU A 192 NA A 303 THR B 180 HOH B 414 SITE 1 AC7 4 GLY C 226 ASP C 228 GLY C 229 VAL C 230 SITE 1 AC8 4 GLY D 226 PRO D 227 ASP D 228 VAL D 230 CRYST1 95.489 108.479 221.408 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010472 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004517 0.00000