HEADER HYDROLASE/HYDROLASE INHIBITOR 08-FEB-13 4J5J TITLE CRYSTAL STRUCTURE OF MULTIDRUG RESISTANT HIV-1 PROTEASE CLINICAL TITLE 2 ISOLATE PR20 IN COMPLEX WITH AMPRENAVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 501-599; COMPND 5 EC: 3.4.23.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS MULTIDRUG RESISTANT HIV-1 PROTEASE CLINICAL ISOLATE PR20, CLINICAL KEYWDS 2 INHIBITOR AMPRENAVIR, POTENT ANTIVIRAL INHIBITOR GRL-0519A, POTENT KEYWDS 3 ANTIVIRAL INHIBITOR GRL-02031, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.H.SHEN,I.T.WEBER REVDAT 3 20-SEP-23 4J5J 1 REMARK SEQADV REVDAT 2 05-JUN-13 4J5J 1 JRNL REVDAT 1 15-MAY-13 4J5J 0 JRNL AUTH J.AGNISWAMY,C.H.SHEN,Y.F.WANG,A.K.GHOSH,K.V.RAO,C.X.XU, JRNL AUTH 2 J.M.SAYER,J.M.LOUIS,I.T.WEBER JRNL TITL EXTREME MULTIDRUG RESISTANT HIV-1 PROTEASE WITH 20 MUTATIONS JRNL TITL 2 IS RESISTANT TO NOVEL PROTEASE INHIBITORS WITH JRNL TITL 3 P1'-PYRROLIDINONE OR P2-TRIS-TETRAHYDROFURAN. JRNL REF J.MED.CHEM. V. 56 4017 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23590295 JRNL DOI 10.1021/JM400231V REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 15764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 828 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 868 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.855 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1652 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2251 ; 2.108 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 7.020 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;38.889 ;24.237 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 277 ;14.446 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.208 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1199 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 703 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1124 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.104 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.168 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.083 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 990 ; 1.427 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1620 ; 2.394 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 662 ; 3.199 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 627 ; 5.180 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 44 REMARK 3 RESIDUE RANGE : B 135 B 144 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8609 -12.1299 -8.8418 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0459 REMARK 3 T33: 0.1006 T12: -0.0255 REMARK 3 T13: 0.0522 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.6015 L22: 1.7717 REMARK 3 L33: 5.5204 L12: -0.3657 REMARK 3 L13: 1.2137 L23: 1.3485 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0204 S13: -0.0646 REMARK 3 S21: 0.0925 S22: -0.0410 S23: 0.0155 REMARK 3 S31: 0.2177 S32: -0.0776 S33: 0.0542 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 57 REMARK 3 RESIDUE RANGE : B 145 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9310 -15.3042 -8.3015 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.0591 REMARK 3 T33: 0.1042 T12: -0.0073 REMARK 3 T13: 0.0231 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.6345 L22: -0.0201 REMARK 3 L33: 3.9023 L12: 0.1521 REMARK 3 L13: -0.0813 L23: 0.1023 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: -0.0629 S13: -0.1108 REMARK 3 S21: -0.0092 S22: -0.0234 S23: -0.0217 REMARK 3 S31: 0.2160 S32: 0.0717 S33: 0.0785 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 72 REMARK 3 RESIDUE RANGE : B 164 B 172 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2691 6.3077 -10.6516 REMARK 3 T TENSOR REMARK 3 T11: 0.0735 T22: 0.0262 REMARK 3 T33: 0.1145 T12: -0.0145 REMARK 3 T13: 0.0331 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.0975 L22: 0.4832 REMARK 3 L33: 4.3008 L12: -0.1735 REMARK 3 L13: 0.3543 L23: 0.0636 REMARK 3 S TENSOR REMARK 3 S11: 0.0956 S12: -0.0239 S13: 0.1909 REMARK 3 S21: -0.0434 S22: 0.0927 S23: -0.0288 REMARK 3 S31: -0.2700 S32: -0.0877 S33: -0.1883 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 82 REMARK 3 RESIDUE RANGE : B 178 B 182 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5525 -12.0001 -9.0136 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.0671 REMARK 3 T33: 0.1434 T12: 0.0175 REMARK 3 T13: 0.0059 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: -0.0338 L22: 0.0098 REMARK 3 L33: 1.8671 L12: -0.0672 REMARK 3 L13: -0.5962 L23: 0.4998 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: -0.0203 S13: -0.0087 REMARK 3 S21: 0.0518 S22: 0.0544 S23: -0.0254 REMARK 3 S31: 0.2435 S32: 0.0589 S33: -0.0351 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 20 REMARK 3 RESIDUE RANGE : B 113 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7046 -1.1132 -9.8833 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0319 REMARK 3 T33: 0.0909 T12: -0.0013 REMARK 3 T13: -0.0224 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.7120 L22: 0.0758 REMARK 3 L33: 4.9705 L12: 0.5166 REMARK 3 L13: 2.4233 L23: -0.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: -0.1203 S13: 0.0978 REMARK 3 S21: 0.0053 S22: -0.0705 S23: 0.0265 REMARK 3 S31: 0.2171 S32: -0.0643 S33: -0.0551 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 RESIDUE RANGE : B 101 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3193 5.9928 -10.2950 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.0941 REMARK 3 T33: 0.1090 T12: 0.0052 REMARK 3 T13: 0.0001 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.4641 L22: 0.8595 REMARK 3 L33: 0.6265 L12: 0.0358 REMARK 3 L13: 0.2490 L23: -0.2211 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: -0.0117 S13: 0.0344 REMARK 3 S21: -0.0115 S22: -0.0210 S23: -0.0062 REMARK 3 S31: -0.0745 S32: 0.0006 S33: 0.0102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84999 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16791 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3UCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.67 M SODIUM CHLORIDE, 67 MM REMARK 280 CITRATE/PHOSPHATE, PH 4.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.35850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.89900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.35850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.89900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 21 CB GLU A 21 CG -0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 29 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 29 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 49.63 -152.05 REMARK 500 ALA B 167 -125.22 48.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 478 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 478 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J54 RELATED DB: PDB REMARK 900 RELATED ID: 4J55 RELATED DB: PDB DBREF 4J5J A 1 99 UNP P03367 POL_HV1BR 501 599 DBREF 4J5J B 101 199 UNP P03367 POL_HV1BR 501 599 SEQADV 4J5J LYS A 7 UNP P03367 GLN 507 ENGINEERED MUTATION SEQADV 4J5J PHE A 10 UNP P03367 LEU 510 ENGINEERED MUTATION SEQADV 4J5J VAL A 13 UNP P03367 ILE 513 ENGINEERED MUTATION SEQADV 4J5J VAL A 15 UNP P03367 ILE 515 ENGINEERED MUTATION SEQADV 4J5J ASN A 30 UNP P03367 ASP 530 ENGINEERED MUTATION SEQADV 4J5J ILE A 32 UNP P03367 VAL 532 ENGINEERED MUTATION SEQADV 4J5J PHE A 33 UNP P03367 LEU 533 ENGINEERED MUTATION SEQADV 4J5J ASP A 35 UNP P03367 GLU 535 ENGINEERED MUTATION SEQADV 4J5J ILE A 36 UNP P03367 MET 536 ENGINEERED MUTATION SEQADV 4J5J ASN A 37 UNP P03367 SER 537 ENGINEERED MUTATION SEQADV 4J5J VAL A 47 UNP P03367 ILE 547 ENGINEERED MUTATION SEQADV 4J5J LEU A 54 UNP P03367 ILE 554 ENGINEERED MUTATION SEQADV 4J5J GLU A 58 UNP P03367 GLN 558 ENGINEERED MUTATION SEQADV 4J5J VAL A 62 UNP P03367 ILE 562 ENGINEERED MUTATION SEQADV 4J5J PRO A 63 UNP P03367 LEU 563 ENGINEERED MUTATION SEQADV 4J5J ALA A 67 UNP P03367 CYS 567 ENGINEERED MUTATION SEQADV 4J5J VAL A 71 UNP P03367 ALA 571 ENGINEERED MUTATION SEQADV 4J5J VAL A 84 UNP P03367 ILE 584 ENGINEERED MUTATION SEQADV 4J5J ASP A 88 UNP P03367 ASN 588 ENGINEERED MUTATION SEQADV 4J5J THR A 89 UNP P03367 LEU 589 ENGINEERED MUTATION SEQADV 4J5J MET A 90 UNP P03367 LEU 590 ENGINEERED MUTATION SEQADV 4J5J ALA A 95 UNP P03367 CYS 595 ENGINEERED MUTATION SEQADV 4J5J LYS B 107 UNP P03367 GLN 507 ENGINEERED MUTATION SEQADV 4J5J PHE B 110 UNP P03367 LEU 510 ENGINEERED MUTATION SEQADV 4J5J VAL B 113 UNP P03367 ILE 513 ENGINEERED MUTATION SEQADV 4J5J VAL B 115 UNP P03367 ILE 515 ENGINEERED MUTATION SEQADV 4J5J ASN B 130 UNP P03367 ASP 530 ENGINEERED MUTATION SEQADV 4J5J ILE B 132 UNP P03367 VAL 532 ENGINEERED MUTATION SEQADV 4J5J PHE B 133 UNP P03367 LEU 533 ENGINEERED MUTATION SEQADV 4J5J ASP B 135 UNP P03367 GLU 535 ENGINEERED MUTATION SEQADV 4J5J ILE B 136 UNP P03367 MET 536 ENGINEERED MUTATION SEQADV 4J5J ASN B 137 UNP P03367 SER 537 ENGINEERED MUTATION SEQADV 4J5J VAL B 147 UNP P03367 ILE 547 ENGINEERED MUTATION SEQADV 4J5J LEU B 154 UNP P03367 ILE 554 ENGINEERED MUTATION SEQADV 4J5J GLU B 158 UNP P03367 GLN 558 ENGINEERED MUTATION SEQADV 4J5J VAL B 162 UNP P03367 ILE 562 ENGINEERED MUTATION SEQADV 4J5J PRO B 163 UNP P03367 LEU 563 ENGINEERED MUTATION SEQADV 4J5J ALA B 167 UNP P03367 CYS 567 ENGINEERED MUTATION SEQADV 4J5J VAL B 171 UNP P03367 ALA 571 ENGINEERED MUTATION SEQADV 4J5J VAL B 184 UNP P03367 ILE 584 ENGINEERED MUTATION SEQADV 4J5J ASP B 188 UNP P03367 ASN 588 ENGINEERED MUTATION SEQADV 4J5J THR B 189 UNP P03367 LEU 589 ENGINEERED MUTATION SEQADV 4J5J MET B 190 UNP P03367 LEU 590 ENGINEERED MUTATION SEQADV 4J5J ALA B 195 UNP P03367 CYS 595 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP LYS ARG PRO PHE VAL THR VAL SEQRES 2 A 99 LYS VAL GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASN THR ILE PHE GLU ASP ILE ASN LEU PRO SEQRES 4 A 99 GLY ARG TRP LYS PRO LYS MET VAL GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE LEU LYS VAL ARG GLU TYR ASP GLN VAL PRO ILE GLU SEQRES 6 A 99 ILE ALA GLY HIS LYS VAL ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO VAL ASN VAL ILE GLY ARG ASP THR MET THR SEQRES 8 A 99 GLN ILE GLY ALA THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP LYS ARG PRO PHE VAL THR VAL SEQRES 2 B 99 LYS VAL GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASN THR ILE PHE GLU ASP ILE ASN LEU PRO SEQRES 4 B 99 GLY ARG TRP LYS PRO LYS MET VAL GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE LEU LYS VAL ARG GLU TYR ASP GLN VAL PRO ILE GLU SEQRES 6 B 99 ILE ALA GLY HIS LYS VAL ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO VAL ASN VAL ILE GLY ARG ASP THR MET THR SEQRES 8 B 99 GLN ILE GLY ALA THR LEU ASN PHE HET CL A 101 1 HET 478 B 401 35 HET 478 B 402 35 HET CL B 403 1 HET CL B 404 1 HETNAM CL CHLORIDE ION HETNAM 478 {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL- HETNAM 2 478 2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL HETNAM 3 478 ESTER HETSYN 478 AMPRENAVIR FORMUL 3 CL 3(CL 1-) FORMUL 4 478 2(C25 H35 N3 O6 S) FORMUL 8 HOH *95(H2 O) HELIX 1 1 GLY A 86 ILE A 93 1 8 HELIX 2 2 GLY B 186 THR B 191 1 6 HELIX 3 3 GLN B 192 GLY B 194 5 3 SHEET 1 A 4 GLN A 2 ILE A 3 0 SHEET 2 A 4 THR B 196 ASN B 198 -1 O LEU B 197 N ILE A 3 SHEET 3 A 4 THR A 96 ASN A 98 -1 N THR A 96 O ASN B 198 SHEET 4 A 4 GLN B 102 ILE B 103 -1 O ILE B 103 N LEU A 97 SHEET 1 B 8 LYS A 43 GLY A 49 0 SHEET 2 B 8 GLY A 52 ILE A 66 -1 O GLU A 58 N LYS A 43 SHEET 3 B 8 HIS A 69 VAL A 77 -1 O VAL A 71 N ILE A 64 SHEET 4 B 8 ILE A 32 PHE A 33 1 N PHE A 33 O LEU A 76 SHEET 5 B 8 VAL A 84 ILE A 85 -1 O VAL A 84 N ILE A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 B 8 PHE A 10 VAL A 15 -1 N VAL A 13 O LYS A 20 SHEET 8 B 8 GLY A 52 ILE A 66 -1 O GLU A 65 N LYS A 14 SHEET 1 C 8 LYS B 143 GLY B 149 0 SHEET 2 C 8 GLY B 152 ILE B 166 -1 O GLU B 158 N LYS B 143 SHEET 3 C 8 HIS B 169 VAL B 177 -1 O VAL B 175 N TYR B 159 SHEET 4 C 8 THR B 131 PHE B 133 1 N THR B 131 O LEU B 176 SHEET 5 C 8 VAL B 184 ILE B 185 -1 O VAL B 184 N ILE B 132 SHEET 6 C 8 GLN B 118 LEU B 124 1 N LEU B 123 O ILE B 185 SHEET 7 C 8 PHE B 110 VAL B 115 -1 N VAL B 113 O LYS B 120 SHEET 8 C 8 GLY B 152 ILE B 166 -1 O GLU B 165 N LYS B 114 SITE 1 AC1 3 ASP B 135 GLY B 178 PRO B 179 SITE 1 AC2 20 ASP A 25 GLY A 27 ALA A 28 ASP A 29 SITE 2 AC2 20 ASN A 30 GLY A 48 GLY A 49 ILE A 50 SITE 3 AC2 20 VAL A 82 ASP B 125 GLY B 127 ALA B 128 SITE 4 AC2 20 ASN B 130 ILE B 132 GLY B 148 GLY B 149 SITE 5 AC2 20 ILE B 150 PRO B 181 VAL B 182 HOH B 501 SITE 1 AC3 17 TRP A 6 GLY A 40 ARG A 41 TRP B 142 SITE 2 AC3 17 PRO B 144 LYS B 145 LYS B 155 VAL B 156 SITE 3 AC3 17 ARG B 157 VAL B 177 PRO B 179 GLN B 192 SITE 4 AC3 17 ILE B 193 GLY B 194 CL B 404 HOH B 508 SITE 5 AC3 17 HOH B 545 SITE 1 AC4 1 GLU B 121 SITE 1 AC5 2 TRP A 6 478 B 402 CRYST1 28.717 65.798 93.560 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010688 0.00000