HEADER OXIDOREDUCTASE/SUBSTRATE 11-FEB-13 4J6B TITLE THE 2.2 A CRYSTAL STRUCTURE OF CYP154C5 FROM NOCARDIA FARCINICA IN TITLE 2 COMPLEX WITH PREGNENOLONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOCARDIA FARCINICA; SOURCE 3 ORGANISM_TAXID: 247156; SOURCE 4 STRAIN: IFM 10152; SOURCE 5 GENE: NFA_53110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CYTOCHROM P450, STEROID HYDROXYLATING MONOOXYGENASE, STEROID BINDING, KEYWDS 2 OXIDOREDUCTASE-SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.HERZOG,K.M.HOFFMANN REVDAT 3 20-SEP-23 4J6B 1 REMARK LINK REVDAT 2 12-NOV-14 4J6B 1 JRNL REVDAT 1 05-MAR-14 4J6B 0 JRNL AUTH K.HERZOG,P.BRACCO,A.ONODA,T.HAYASHI,K.HOFFMANN,A.SCHALLMEY JRNL TITL ENZYME-SUBSTRATE COMPLEX STRUCTURES OF CYP154C5 SHED LIGHT JRNL TITL 2 ON ITS MODE OF HIGHLY SELECTIVE STEROID HYDROXYLATION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2875 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25372679 JRNL DOI 10.1107/S1399004714019129 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2204 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3025 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 147 REMARK 3 SOLVENT ATOMS : 490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : -1.22000 REMARK 3 B33 (A**2) : 1.83000 REMARK 3 B12 (A**2) : -0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.244 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.457 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6558 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4329 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8984 ; 1.658 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10536 ; 0.762 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 816 ; 5.451 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;34.286 ;23.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1025 ;13.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;14.627 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1045 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7299 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1334 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2783 ; 0.090 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 2359 ; 2.320 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2783 ; 2.590 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3870 8.1610 -9.0220 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0690 REMARK 3 T33: 0.1407 T12: 0.0517 REMARK 3 T13: 0.0359 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.4560 L22: 2.7512 REMARK 3 L33: 1.3158 L12: 0.2020 REMARK 3 L13: 0.7589 L23: -0.0379 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: -0.0907 S13: 0.0075 REMARK 3 S21: 0.0843 S22: 0.0368 S23: 0.1774 REMARK 3 S31: -0.0495 S32: -0.1614 S33: -0.0157 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2920 7.0290 -15.3430 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.0437 REMARK 3 T33: 0.0822 T12: 0.0093 REMARK 3 T13: 0.0455 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.4532 L22: 0.6551 REMARK 3 L33: 0.5381 L12: 0.3571 REMARK 3 L13: 0.1941 L23: 0.2140 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: 0.0132 S13: 0.0614 REMARK 3 S21: -0.0012 S22: 0.0432 S23: -0.0135 REMARK 3 S31: -0.0982 S32: 0.0433 S33: -0.1190 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 42.9250 -8.2560 -31.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.0970 T22: 0.1332 REMARK 3 T33: 0.0319 T12: -0.0167 REMARK 3 T13: 0.0035 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.7263 L22: 3.7499 REMARK 3 L33: 2.4189 L12: 3.0319 REMARK 3 L13: 1.5687 L23: 2.7776 REMARK 3 S TENSOR REMARK 3 S11: -0.2019 S12: 0.2705 S13: 0.1201 REMARK 3 S21: -0.0311 S22: 0.3138 S23: -0.0430 REMARK 3 S31: 0.0810 S32: 0.2162 S33: -0.1119 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 35.4410 -19.3580 -12.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.0899 REMARK 3 T33: 0.0426 T12: 0.0066 REMARK 3 T13: -0.0031 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1805 L22: 0.4695 REMARK 3 L33: 0.1425 L12: 0.2157 REMARK 3 L13: -0.0097 L23: 0.1115 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.0428 S13: -0.0279 REMARK 3 S21: -0.0054 S22: -0.0199 S23: -0.0253 REMARK 3 S31: 0.0324 S32: 0.0064 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 205 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 53.5650 -15.9440 -24.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.1118 REMARK 3 T33: 0.0598 T12: 0.0171 REMARK 3 T13: 0.0256 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 5.1844 L22: 0.2894 REMARK 3 L33: 0.0424 L12: 1.2240 REMARK 3 L13: -0.4377 L23: -0.1048 REMARK 3 S TENSOR REMARK 3 S11: -0.1292 S12: 0.3162 S13: -0.3417 REMARK 3 S21: -0.0319 S22: 0.0848 S23: -0.0846 REMARK 3 S31: 0.0061 S32: -0.0487 S33: 0.0444 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 232 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5110 -6.8520 -21.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.0763 REMARK 3 T33: 0.0866 T12: 0.0227 REMARK 3 T13: -0.0076 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.0146 L22: 0.2568 REMARK 3 L33: 0.2134 L12: 0.0156 REMARK 3 L13: 0.0254 L23: 0.0848 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.0178 S13: 0.0156 REMARK 3 S21: -0.0475 S22: -0.0052 S23: 0.0625 REMARK 3 S31: -0.0207 S32: -0.0227 S33: -0.0123 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 387 A 410 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9910 -14.7060 -8.5190 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.0653 REMARK 3 T33: 0.1473 T12: 0.0106 REMARK 3 T13: 0.0333 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 0.2991 L22: 2.8751 REMARK 3 L33: 0.2086 L12: 0.9155 REMARK 3 L13: -0.1435 L23: -0.5281 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.0240 S13: 0.1219 REMARK 3 S21: 0.0399 S22: -0.0503 S23: 0.2918 REMARK 3 S31: -0.0285 S32: -0.0422 S33: 0.0327 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 34 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4600 13.6330 8.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.0135 REMARK 3 T33: 0.0788 T12: 0.0401 REMARK 3 T13: -0.0236 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.6966 L22: 0.4351 REMARK 3 L33: 1.5765 L12: -0.4304 REMARK 3 L13: -0.5046 L23: -0.5531 REMARK 3 S TENSOR REMARK 3 S11: -0.0849 S12: 0.0626 S13: -0.2218 REMARK 3 S21: -0.0506 S22: -0.0247 S23: 0.0403 REMARK 3 S31: 0.1555 S32: -0.0029 S33: 0.1097 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8250 32.1080 18.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.1227 REMARK 3 T33: 0.0375 T12: -0.0041 REMARK 3 T13: -0.0110 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.6946 L22: 0.2927 REMARK 3 L33: 0.7408 L12: 0.1279 REMARK 3 L13: -0.3651 L23: 0.1194 REMARK 3 S TENSOR REMARK 3 S11: 0.0871 S12: -0.0845 S13: -0.0589 REMARK 3 S21: 0.0073 S22: -0.0397 S23: -0.0865 REMARK 3 S31: -0.1008 S32: 0.2134 S33: -0.0474 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 112 B 204 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1910 40.3300 13.3710 REMARK 3 T TENSOR REMARK 3 T11: 0.1112 T22: 0.0494 REMARK 3 T33: 0.0594 T12: -0.0094 REMARK 3 T13: 0.0169 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.5492 L22: 0.0757 REMARK 3 L33: 0.1199 L12: 0.1397 REMARK 3 L13: -0.0407 L23: -0.0397 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.0137 S13: 0.0689 REMARK 3 S21: -0.0231 S22: 0.0083 S23: 0.0443 REMARK 3 S31: -0.0543 S32: -0.0228 S33: -0.0422 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 205 B 227 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6320 54.7080 24.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.0589 REMARK 3 T33: 0.0781 T12: -0.0723 REMARK 3 T13: 0.0931 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 5.0641 L22: 2.2474 REMARK 3 L33: 0.3115 L12: 1.4833 REMARK 3 L13: -0.4271 L23: -0.8312 REMARK 3 S TENSOR REMARK 3 S11: 0.2280 S12: -0.3652 S13: 0.2684 REMARK 3 S21: -0.0055 S22: -0.1806 S23: 0.1547 REMARK 3 S31: 0.0161 S32: 0.0557 S33: -0.0475 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 228 B 345 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3350 23.4460 21.4730 REMARK 3 T TENSOR REMARK 3 T11: 0.1054 T22: 0.0555 REMARK 3 T33: 0.0703 T12: 0.0053 REMARK 3 T13: -0.0123 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.1212 L22: 0.0187 REMARK 3 L33: 0.4258 L12: -0.0167 REMARK 3 L13: -0.1261 L23: 0.0866 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.0592 S13: 0.0008 REMARK 3 S21: 0.0261 S22: 0.0009 S23: -0.0022 REMARK 3 S31: 0.1073 S32: 0.0349 S33: 0.0052 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 346 B 399 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1870 26.3110 19.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.0407 REMARK 3 T33: 0.0360 T12: -0.0184 REMARK 3 T13: -0.0036 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.2578 L22: 0.0101 REMARK 3 L33: 0.6583 L12: 0.0945 REMARK 3 L13: 0.3992 L23: 0.0571 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: -0.1091 S13: -0.1168 REMARK 3 S21: 0.0204 S22: -0.0145 S23: -0.0129 REMARK 3 S31: 0.1096 S32: -0.0225 S33: -0.0525 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 400 B 410 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5230 25.4290 9.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.0858 REMARK 3 T33: 0.2505 T12: -0.0565 REMARK 3 T13: -0.0243 T23: 0.0827 REMARK 3 L TENSOR REMARK 3 L11: 10.2489 L22: 1.0035 REMARK 3 L33: 0.5324 L12: -2.8055 REMARK 3 L13: 1.1577 L23: -0.0127 REMARK 3 S TENSOR REMARK 3 S11: 0.4706 S12: -0.0583 S13: -0.8985 REMARK 3 S21: -0.1288 S22: -0.0992 S23: 0.0476 REMARK 3 S31: 0.0303 S32: -0.1279 S33: -0.3714 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4J6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 82.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13900 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : 0.55900 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB-ENTRY 1GWI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M MGCHO2 , PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.56000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.76818 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.61000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 51.56000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 29.76818 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.61000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 51.56000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 29.76818 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.61000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.53636 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 145.22000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 59.53636 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 145.22000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 59.53636 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 145.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS ONE CHAIN OF THE DIMER IN THE ASYM. UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 224 REMARK 465 GLY A 225 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 4 CB SG REMARK 470 ARG A 34 CD NE CZ NH1 NH2 REMARK 470 GLU A 98 CD OE1 OE2 REMARK 470 ARG A 100 NH1 NH2 REMARK 470 LYS A 105 NZ REMARK 470 ARG A 112 CG CD NH2 REMARK 470 ARG A 113 NH1 NH2 REMARK 470 LYS A 119 NZ REMARK 470 LYS A 177 NZ REMARK 470 ASP A 213 CG OD1 OD2 REMARK 470 ALA A 222 CB REMARK 470 THR A 223 C O CB OG1 CG2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 ARG A 312 CZ NH1 NH2 REMARK 470 ARG A 346 CD NE CZ NH1 NH2 REMARK 470 ARG A 410 CB CG CD REMARK 470 CYS B 4 CB SG REMARK 470 ARG B 25 CD REMARK 470 ARG B 34 CD NE REMARK 470 GLU B 98 OE1 OE2 REMARK 470 ARG B 100 CD NE CZ NH1 NH2 REMARK 470 LYS B 105 NZ REMARK 470 ARG B 112 CG CD REMARK 470 ARG B 113 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 119 CE NZ REMARK 470 GLU B 167 OE1 OE2 REMARK 470 LYS B 177 NZ REMARK 470 GLU B 210 CG CD OE1 OE2 REMARK 470 ASP B 213 CG OD1 OD2 REMARK 470 ALA B 222 CB REMARK 470 THR B 223 CB OG1 CG2 REMARK 470 GLU B 226 CB CG CD OE1 OE2 REMARK 470 LEU B 305 CD1 REMARK 470 ARG B 312 CZ NH1 NH2 REMARK 470 ARG B 346 CD NE NH2 REMARK 470 ARG B 410 CA C O CB CG CD NE REMARK 470 ARG B 410 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 187 NH1 ARG B 135 3555 1.96 REMARK 500 NH1 ARG B 135 O HOH A 793 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 6 CG HIS A 6 CD2 0.057 REMARK 500 HIS B 6 CG HIS B 6 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 85 -30.48 -131.99 REMARK 500 PHE A 149 -67.40 -128.41 REMARK 500 ASP A 288 51.44 -144.31 REMARK 500 ILE B 85 -34.42 -130.56 REMARK 500 PHE B 149 -64.88 -128.27 REMARK 500 GLU B 226 -148.43 -88.18 REMARK 500 ASP B 288 49.91 -144.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 6 NE2 REMARK 620 2 ASP A 8 OD2 136.8 REMARK 620 3 ASP A 8 OD1 83.3 60.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 357 SG REMARK 620 2 HEM A 502 NA 114.0 REMARK 620 3 HEM A 502 NB 94.4 87.3 REMARK 620 4 HEM A 502 NC 101.6 144.4 89.3 REMARK 620 5 HEM A 502 ND 102.4 84.5 163.2 88.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 6 NE2 REMARK 620 2 ASP B 8 OD1 106.7 REMARK 620 3 ASP B 8 OD2 99.9 47.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 357 SG REMARK 620 2 HEM B 501 NA 116.3 REMARK 620 3 HEM B 501 NB 91.1 85.7 REMARK 620 4 HEM B 501 NC 100.9 142.3 87.8 REMARK 620 5 HEM B 501 ND 108.0 85.1 160.8 89.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J6B RELATED DB: PDB REMARK 900 RELATED ID: 4J6C RELATED DB: PDB REMARK 900 RELATED ID: 4JBT RELATED DB: PDB DBREF 4J6B A 1 410 UNP Q5YNS8 Q5YNS8_NOCFA 1 410 DBREF 4J6B B 1 410 UNP Q5YNS8 Q5YNS8_NOCFA 1 410 SEQRES 1 A 410 MET ASN ALA CYS PRO HIS SER ASP THR LEU THR ILE ASP SEQRES 2 A 410 PRO MET ILE THR ASP LEU ALA GLY GLU THR SER ARG LEU SEQRES 3 A 410 ARG ALA ALA GLY PRO LEU THR ARG ILE ASP LEU LEU GLY SEQRES 4 A 410 VAL PRO ALA LEU ALA VAL THR GLY HIS THR LEU ALA ARG SEQRES 5 A 410 GLN LEU LEU THR ASP THR ARG LEU VAL LYS ASP ILE ASN SEQRES 6 A 410 ALA TRP SER LEU TRP GLN SER GLY THR VAL THR ARG GLN SEQRES 7 A 410 TRP PRO LEU ILE GLY MET ILE ASP VAL ASP ARG SER MET SEQRES 8 A 410 PHE THR VAL ASP GLY PRO GLU HIS ARG ARG LEU ARG ILE SEQRES 9 A 410 LYS THR THR GLN ALA LEU THR ARG ARG ARG LEU ASP ALA SEQRES 10 A 410 LEU LYS PRO THR ILE GLU ARG TYR VAL ALA GLU LEU LEU SEQRES 11 A 410 ASP ASP LEU GLU ARG ALA GLY ALA ASP GLY ALA VAL VAL SEQRES 12 A 410 ASP LEU LYS SER VAL PHE ALA TYR PRO LEU PRO MET ARG SEQRES 13 A 410 VAL ILE SER ALA LEU MET GLY VAL PRO SER GLU ASP GLN SEQRES 14 A 410 GLU GLN LEU LEU THR TRP TYR LYS ALA PHE PHE SER ILE SEQRES 15 A 410 LEU THR PRO GLN ASP GLU ARG LEU ARG VAL ILE ASP GLU SEQRES 16 A 410 MET HIS GLY TYR PHE THR GLU MET VAL ARG ARG LYS THR SEQRES 17 A 410 ALA GLU PRO GLY ASP ASP LEU THR SER ALA LEU ILE TYR SEQRES 18 A 410 ALA THR ASP GLY GLU THR PRO LEU THR GLU GLU GLU VAL SEQRES 19 A 410 ILE GLY ASN LEU GLN ALA LEU VAL ALA ALA GLY HIS GLU SEQRES 20 A 410 THR THR VAL SER LEU ILE LEU THR ALA VAL ARG ALA LEU SEQRES 21 A 410 LEU SER HIS PRO GLU GLN LEU ARG LEU VAL ARG ASP GLY SEQRES 22 A 410 GLU ILE GLY TRP GLU THR ALA ILE GLU GLU THR LEU ARG SEQRES 23 A 410 TRP ASP GLY PRO VAL ILE HIS LEU LEU MET ARG PHE ALA SEQRES 24 A 410 THR GLU ASP ILE ASP LEU GLY ASP ALA VAL ILE PRO ARG SEQRES 25 A 410 GLY GLU GLY VAL VAL MET SER TYR ARG ALA ILE GLY ARG SEQRES 26 A 410 ASP ILE THR VAL HIS GLY ALA ASP ALA ASP ASP PHE ASP SEQRES 27 A 410 ILE THR ARG ALA THR ALA ALA ARG HIS ILE SER PHE GLY SEQRES 28 A 410 HIS GLY PRO HIS ILE CYS PRO GLY ALA ALA LEU ALA ARG SEQRES 29 A 410 LEU GLU ALA ALA ILE ALA LEU PRO ALA LEU PHE THR ARG SEQRES 30 A 410 PHE PRO HIS LEU HIS PRO ALA LEU PRO LEU ASP GLN ILE SEQRES 31 A 410 PRO ASN LEU PRO VAL LEU THR GLN ASN ASP LEU SER HIS SEQRES 32 A 410 PHE PRO ILE HIS LEU GLY ARG SEQRES 1 B 410 MET ASN ALA CYS PRO HIS SER ASP THR LEU THR ILE ASP SEQRES 2 B 410 PRO MET ILE THR ASP LEU ALA GLY GLU THR SER ARG LEU SEQRES 3 B 410 ARG ALA ALA GLY PRO LEU THR ARG ILE ASP LEU LEU GLY SEQRES 4 B 410 VAL PRO ALA LEU ALA VAL THR GLY HIS THR LEU ALA ARG SEQRES 5 B 410 GLN LEU LEU THR ASP THR ARG LEU VAL LYS ASP ILE ASN SEQRES 6 B 410 ALA TRP SER LEU TRP GLN SER GLY THR VAL THR ARG GLN SEQRES 7 B 410 TRP PRO LEU ILE GLY MET ILE ASP VAL ASP ARG SER MET SEQRES 8 B 410 PHE THR VAL ASP GLY PRO GLU HIS ARG ARG LEU ARG ILE SEQRES 9 B 410 LYS THR THR GLN ALA LEU THR ARG ARG ARG LEU ASP ALA SEQRES 10 B 410 LEU LYS PRO THR ILE GLU ARG TYR VAL ALA GLU LEU LEU SEQRES 11 B 410 ASP ASP LEU GLU ARG ALA GLY ALA ASP GLY ALA VAL VAL SEQRES 12 B 410 ASP LEU LYS SER VAL PHE ALA TYR PRO LEU PRO MET ARG SEQRES 13 B 410 VAL ILE SER ALA LEU MET GLY VAL PRO SER GLU ASP GLN SEQRES 14 B 410 GLU GLN LEU LEU THR TRP TYR LYS ALA PHE PHE SER ILE SEQRES 15 B 410 LEU THR PRO GLN ASP GLU ARG LEU ARG VAL ILE ASP GLU SEQRES 16 B 410 MET HIS GLY TYR PHE THR GLU MET VAL ARG ARG LYS THR SEQRES 17 B 410 ALA GLU PRO GLY ASP ASP LEU THR SER ALA LEU ILE TYR SEQRES 18 B 410 ALA THR ASP GLY GLU THR PRO LEU THR GLU GLU GLU VAL SEQRES 19 B 410 ILE GLY ASN LEU GLN ALA LEU VAL ALA ALA GLY HIS GLU SEQRES 20 B 410 THR THR VAL SER LEU ILE LEU THR ALA VAL ARG ALA LEU SEQRES 21 B 410 LEU SER HIS PRO GLU GLN LEU ARG LEU VAL ARG ASP GLY SEQRES 22 B 410 GLU ILE GLY TRP GLU THR ALA ILE GLU GLU THR LEU ARG SEQRES 23 B 410 TRP ASP GLY PRO VAL ILE HIS LEU LEU MET ARG PHE ALA SEQRES 24 B 410 THR GLU ASP ILE ASP LEU GLY ASP ALA VAL ILE PRO ARG SEQRES 25 B 410 GLY GLU GLY VAL VAL MET SER TYR ARG ALA ILE GLY ARG SEQRES 26 B 410 ASP ILE THR VAL HIS GLY ALA ASP ALA ASP ASP PHE ASP SEQRES 27 B 410 ILE THR ARG ALA THR ALA ALA ARG HIS ILE SER PHE GLY SEQRES 28 B 410 HIS GLY PRO HIS ILE CYS PRO GLY ALA ALA LEU ALA ARG SEQRES 29 B 410 LEU GLU ALA ALA ILE ALA LEU PRO ALA LEU PHE THR ARG SEQRES 30 B 410 PHE PRO HIS LEU HIS PRO ALA LEU PRO LEU ASP GLN ILE SEQRES 31 B 410 PRO ASN LEU PRO VAL LEU THR GLN ASN ASP LEU SER HIS SEQRES 32 B 410 PHE PRO ILE HIS LEU GLY ARG HET PLO A 501 23 HET HEM A 502 43 HET MG A 503 1 HET FMT A 504 3 HET K A 505 1 HET HEM B 501 43 HET MG B 502 1 HET PLO B 503 23 HET FMT B 504 3 HET FMT B 505 3 HET FMT B 506 3 HETNAM PLO (3BETA)-3-HYDROXYPREGN-5-EN-20-ONE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID HETNAM K POTASSIUM ION HETSYN PLO PREGNENOLONE HETSYN HEM HEME FORMUL 3 PLO 2(C21 H32 O2) FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 5 MG 2(MG 2+) FORMUL 6 FMT 4(C H2 O2) FORMUL 7 K K 1+ FORMUL 14 HOH *490(H2 O) HELIX 1 1 ASP A 18 GLY A 30 1 13 HELIX 2 2 GLY A 47 THR A 56 1 10 HELIX 3 3 ASP A 63 ALA A 66 5 4 HELIX 4 4 TRP A 67 SER A 72 1 6 HELIX 5 5 LEU A 81 ILE A 85 5 5 HELIX 6 6 GLY A 96 LEU A 110 1 15 HELIX 7 7 THR A 111 ASP A 116 1 6 HELIX 8 8 LEU A 118 GLY A 137 1 20 HELIX 9 9 ALA A 138 ALA A 141 5 4 HELIX 10 10 LEU A 145 PHE A 149 1 5 HELIX 11 11 TYR A 151 GLY A 163 1 13 HELIX 12 12 PRO A 165 GLU A 167 5 3 HELIX 13 13 ASP A 168 SER A 181 1 14 HELIX 14 14 PRO A 185 GLU A 210 1 26 HELIX 15 15 ASP A 214 TYR A 221 1 8 HELIX 16 16 THR A 230 HIS A 263 1 34 HELIX 17 17 HIS A 263 ASP A 272 1 10 HELIX 18 18 GLY A 276 GLY A 289 1 14 HELIX 19 19 SER A 319 ARG A 325 1 7 HELIX 20 20 ASP A 326 GLY A 331 1 6 HELIX 21 21 GLY A 359 PHE A 378 1 20 HELIX 22 22 PRO A 386 ILE A 390 5 5 HELIX 23 23 ASP B 18 ALA B 29 1 12 HELIX 24 24 GLY B 47 LEU B 55 1 9 HELIX 25 25 ASP B 63 ALA B 66 5 4 HELIX 26 26 TRP B 67 SER B 72 1 6 HELIX 27 27 LEU B 81 ILE B 85 5 5 HELIX 28 28 GLY B 96 LEU B 110 1 15 HELIX 29 29 THR B 111 ASP B 116 1 6 HELIX 30 30 LEU B 118 GLY B 137 1 20 HELIX 31 31 ALA B 138 ALA B 141 5 4 HELIX 32 32 LEU B 145 PHE B 149 1 5 HELIX 33 33 TYR B 151 GLY B 163 1 13 HELIX 34 34 PRO B 165 GLU B 167 5 3 HELIX 35 35 ASP B 168 SER B 181 1 14 HELIX 36 36 PRO B 185 GLU B 210 1 26 HELIX 37 37 ASP B 214 TYR B 221 1 8 HELIX 38 38 THR B 230 HIS B 263 1 34 HELIX 39 39 HIS B 263 ASP B 272 1 10 HELIX 40 40 GLY B 276 GLY B 289 1 14 HELIX 41 41 SER B 319 ARG B 325 1 7 HELIX 42 42 ASP B 326 GLY B 331 1 6 HELIX 43 43 GLY B 359 PHE B 378 1 20 HELIX 44 44 PRO B 386 ILE B 390 5 5 SHEET 1 A 6 LEU A 10 THR A 11 0 SHEET 2 A 6 LEU A 32 LEU A 37 1 O ARG A 34 N LEU A 10 SHEET 3 A 6 VAL A 40 VAL A 45 -1 O VAL A 40 N LEU A 37 SHEET 4 A 6 GLY A 315 MET A 318 1 O VAL A 317 N LEU A 43 SHEET 5 A 6 LEU A 294 ALA A 299 -1 N ARG A 297 O VAL A 316 SHEET 6 A 6 LEU A 60 VAL A 61 -1 N VAL A 61 O PHE A 298 SHEET 1 B 3 VAL A 143 ASP A 144 0 SHEET 2 B 3 PRO A 405 HIS A 407 -1 O ILE A 406 N VAL A 143 SHEET 3 B 3 HIS A 382 PRO A 383 -1 N HIS A 382 O HIS A 407 SHEET 1 C 2 ILE A 303 ASP A 304 0 SHEET 2 C 2 VAL A 309 ILE A 310 -1 O ILE A 310 N ILE A 303 SHEET 1 D 6 LEU B 10 THR B 11 0 SHEET 2 D 6 LEU B 32 LEU B 37 1 O ARG B 34 N LEU B 10 SHEET 3 D 6 VAL B 40 VAL B 45 -1 O ALA B 44 N THR B 33 SHEET 4 D 6 GLY B 315 MET B 318 1 O VAL B 317 N LEU B 43 SHEET 5 D 6 LEU B 294 ALA B 299 -1 N ARG B 297 O VAL B 316 SHEET 6 D 6 LEU B 60 VAL B 61 -1 N VAL B 61 O PHE B 298 SHEET 1 E 3 VAL B 143 ASP B 144 0 SHEET 2 E 3 PRO B 405 HIS B 407 -1 O ILE B 406 N VAL B 143 SHEET 3 E 3 HIS B 382 PRO B 383 -1 N HIS B 382 O HIS B 407 SHEET 1 F 2 ILE B 303 ASP B 304 0 SHEET 2 F 2 VAL B 309 ILE B 310 -1 O ILE B 310 N ILE B 303 LINK NE2 HIS A 6 MG MG A 503 1555 1555 1.66 LINK OD2 ASP A 8 MG MG A 503 1555 1555 1.95 LINK OD1 ASP A 8 MG MG A 503 1555 1555 2.25 LINK SG CYS A 357 FE HEM A 502 1555 1555 2.31 LINK NE2 HIS B 6 MG MG B 502 1555 1555 1.69 LINK OD1 ASP B 8 MG MG B 502 1555 1555 1.74 LINK OD2 ASP B 8 MG MG B 502 1555 1555 2.91 LINK SG CYS B 357 FE HEM B 501 1555 1555 2.32 CISPEP 1 GLY A 30 PRO A 31 0 5.39 CISPEP 2 GLU A 226 THR A 227 0 -3.25 CISPEP 3 LEU A 295 MET A 296 0 -9.07 CISPEP 4 GLY B 30 PRO B 31 0 5.44 CISPEP 5 GLY B 225 GLU B 226 0 0.65 CISPEP 6 LEU B 295 MET B 296 0 -6.37 SITE 1 AC1 11 MET A 84 PHE A 179 GLN A 239 ALA A 240 SITE 2 AC1 11 THR A 248 VAL A 291 GLN A 398 HEM A 502 SITE 3 AC1 11 HOH A 751 HOH A 779 HOH A 846 SITE 1 AC2 25 LEU A 55 MET A 91 PHE A 92 HIS A 99 SITE 2 AC2 25 ARG A 103 ILE A 158 ALA A 244 GLY A 245 SITE 3 AC2 25 THR A 248 THR A 249 PRO A 290 LEU A 294 SITE 4 AC2 25 ARG A 297 TYR A 320 SER A 349 PHE A 350 SITE 5 AC2 25 GLY A 351 HIS A 355 CYS A 357 PRO A 358 SITE 6 AC2 25 GLY A 359 ALA A 363 PLO A 501 HOH A 625 SITE 7 AC2 25 HOH A 682 SITE 1 AC3 4 HIS A 6 ASP A 8 HIS A 382 HIS A 407 SITE 1 AC4 5 LEU A 81 PHE A 180 LEU A 396 THR A 397 SITE 2 AC4 5 HOH A 782 SITE 1 AC5 1 ASP A 88 SITE 1 AC6 25 MET B 91 PHE B 92 HIS B 99 ARG B 103 SITE 2 AC6 25 ILE B 158 LEU B 241 ALA B 244 GLY B 245 SITE 3 AC6 25 THR B 248 THR B 249 PRO B 290 LEU B 294 SITE 4 AC6 25 ARG B 297 TYR B 320 SER B 349 PHE B 350 SITE 5 AC6 25 GLY B 351 HIS B 355 CYS B 357 PRO B 358 SITE 6 AC6 25 GLY B 359 ALA B 363 PLO B 503 HOH B 653 SITE 7 AC6 25 HOH B 744 SITE 1 AC7 4 HIS B 6 ASP B 8 HIS B 382 HIS B 407 SITE 1 AC8 9 GLY B 83 MET B 84 PHE B 179 GLN B 239 SITE 2 AC8 9 ALA B 240 THR B 248 GLN B 398 HEM B 501 SITE 3 AC8 9 HOH B 768 SITE 1 AC9 4 THR B 56 ASP B 57 THR B 58 ARG B 59 SITE 1 BC1 4 THR A 56 ASP A 57 THR A 58 ARG A 59 SITE 1 BC2 4 PHE B 180 LEU B 396 THR B 397 HOH B 771 CRYST1 103.120 103.120 217.830 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009697 0.005599 0.000000 0.00000 SCALE2 0.000000 0.011198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004591 0.00000