HEADER UNKNOWN FUNCTION 14-FEB-13 4J8L TITLE CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT PROTEIN YHFS TITLE 2 FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YHFS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YHFS, B3376, JW3339; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TWO DOMAINS, UNKNOWN FUNCTION, PLP COVALENTLY ATTACHED TO LYSINE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,D.F.XIANG,F.M.RAUSHEL,S.C.ALMO REVDAT 1 05-MAR-14 4J8L 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,D.F.XIANG,F.M.RAUSHEL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT JRNL TITL 2 PROTEIN YHFS FROM ESCHERICHIA COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1390 - 4.3268 1.00 2804 141 0.1552 0.1797 REMARK 3 2 4.3268 - 3.4346 1.00 2630 147 0.1476 0.1565 REMARK 3 3 3.4346 - 3.0006 1.00 2589 158 0.1776 0.1958 REMARK 3 4 3.0006 - 2.7263 1.00 2586 145 0.1854 0.2108 REMARK 3 5 2.7263 - 2.5309 1.00 2569 135 0.1793 0.1753 REMARK 3 6 2.5309 - 2.3817 1.00 2581 132 0.1747 0.2171 REMARK 3 7 2.3817 - 2.2624 1.00 2559 137 0.1694 0.2138 REMARK 3 8 2.2624 - 2.1639 1.00 2552 126 0.1700 0.2079 REMARK 3 9 2.1639 - 2.0806 1.00 2549 119 0.1677 0.2121 REMARK 3 10 2.0806 - 2.0088 1.00 2547 141 0.1643 0.2005 REMARK 3 11 2.0088 - 1.9460 1.00 2520 150 0.1732 0.2043 REMARK 3 12 1.9460 - 1.8904 1.00 2518 147 0.1711 0.2378 REMARK 3 13 1.8904 - 1.8406 1.00 2518 138 0.1767 0.2171 REMARK 3 14 1.8406 - 1.7957 1.00 2543 117 0.1859 0.2362 REMARK 3 15 1.7957 - 1.7549 1.00 2506 150 0.1995 0.2461 REMARK 3 16 1.7549 - 1.7175 1.00 2542 124 0.1905 0.2350 REMARK 3 17 1.7175 - 1.6832 1.00 2512 132 0.2061 0.2312 REMARK 3 18 1.6832 - 1.6514 0.98 2499 115 0.2272 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2820 REMARK 3 ANGLE : 1.068 3836 REMARK 3 CHIRALITY : 0.069 447 REMARK 3 PLANARITY : 0.006 510 REMARK 3 DIHEDRAL : 13.062 1043 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 1 through 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2805 51.2025 36.4030 REMARK 3 T TENSOR REMARK 3 T11: 0.1583 T22: 0.1657 REMARK 3 T33: 0.1365 T12: -0.0190 REMARK 3 T13: -0.0448 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.1218 L22: 7.4331 REMARK 3 L33: 3.4447 L12: -2.1999 REMARK 3 L13: -1.8242 L23: 2.8857 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: 0.2711 S13: -0.1740 REMARK 3 S21: -0.6479 S22: -0.1527 S23: 0.1524 REMARK 3 S31: -0.1035 S32: -0.0576 S33: 0.0539 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 29 through 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8308 61.4237 60.3316 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1635 REMARK 3 T33: 0.1992 T12: -0.0029 REMARK 3 T13: 0.0293 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.6951 L22: 2.7456 REMARK 3 L33: 5.8913 L12: 1.3472 REMARK 3 L13: -1.9082 L23: -4.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.0996 S12: -0.0774 S13: 0.1546 REMARK 3 S21: 0.1865 S22: -0.0140 S23: 0.2400 REMARK 3 S31: -0.2493 S32: -0.0003 S33: -0.1049 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 50 through 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6742 53.1325 52.2987 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.1142 REMARK 3 T33: 0.1689 T12: 0.0128 REMARK 3 T13: 0.0165 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.3812 L22: 0.9730 REMARK 3 L33: 7.4730 L12: 0.9923 REMARK 3 L13: 2.1702 L23: 0.1028 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: -0.0485 S13: 0.0975 REMARK 3 S21: -0.0938 S22: -0.0150 S23: 0.2989 REMARK 3 S31: -0.3415 S32: -0.2448 S33: 0.0022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resid 74 through 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6892 29.1714 45.7156 REMARK 3 T TENSOR REMARK 3 T11: 0.2569 T22: 0.1719 REMARK 3 T33: 0.2808 T12: -0.0719 REMARK 3 T13: -0.0155 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 1.1066 L22: 1.7535 REMARK 3 L33: 1.7453 L12: -0.4885 REMARK 3 L13: -0.1440 L23: -0.0704 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: 0.1658 S13: -0.3512 REMARK 3 S21: -0.2137 S22: 0.0031 S23: 0.1400 REMARK 3 S31: 0.4001 S32: -0.2230 S33: -0.0200 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resid 171 through 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3338 44.9573 51.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.1519 T22: 0.1368 REMARK 3 T33: 0.2081 T12: -0.0089 REMARK 3 T13: -0.0081 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.7893 L22: 0.9788 REMARK 3 L33: 2.0115 L12: -0.0530 REMARK 3 L13: -0.4576 L23: 0.2325 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.0690 S13: -0.0314 REMARK 3 S21: -0.0534 S22: 0.0239 S23: 0.1590 REMARK 3 S31: 0.1030 S32: -0.1236 S33: -0.0504 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resid 229 through 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4635 51.8143 41.7231 REMARK 3 T TENSOR REMARK 3 T11: 0.1439 T22: 0.1196 REMARK 3 T33: 0.1222 T12: -0.0003 REMARK 3 T13: -0.0100 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.8586 L22: 0.8516 REMARK 3 L33: 6.3122 L12: -0.9281 REMARK 3 L13: -5.3143 L23: 0.9467 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: -0.0376 S13: 0.1541 REMARK 3 S21: -0.1855 S22: 0.0816 S23: 0.0666 REMARK 3 S31: -0.1408 S32: 0.2009 S33: -0.2062 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resid 262 through 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9494 35.6855 37.8333 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1225 REMARK 3 T33: 0.2041 T12: 0.0226 REMARK 3 T13: 0.0624 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.3673 L22: 1.5425 REMARK 3 L33: 2.0001 L12: -0.6460 REMARK 3 L13: -0.1828 L23: 0.4373 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: 0.1916 S13: -0.3196 REMARK 3 S21: -0.1261 S22: -0.0390 S23: -0.1255 REMARK 3 S31: 0.1164 S32: 0.0940 S33: 0.0194 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resid 300 through 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6044 37.1608 47.0511 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.1324 REMARK 3 T33: 0.1773 T12: 0.0083 REMARK 3 T13: 0.0236 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.7673 L22: 4.0974 REMARK 3 L33: 2.2116 L12: -0.2685 REMARK 3 L13: -0.1595 L23: 1.9714 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.0018 S13: -0.2769 REMARK 3 S21: 0.2170 S22: -0.0433 S23: 0.0361 REMARK 3 S31: 0.3024 S32: -0.0254 S33: 0.0777 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'A' and (resid 337 through 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3324 44.3903 39.1797 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.1362 REMARK 3 T33: 0.1069 T12: 0.0168 REMARK 3 T13: 0.0445 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 5.0566 L22: 4.2027 REMARK 3 L33: 1.5383 L12: 0.7016 REMARK 3 L13: -1.0558 L23: 0.1401 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: -0.0305 S13: 0.0336 REMARK 3 S21: -0.3261 S22: 0.0499 S23: -0.2878 REMARK 3 S31: -0.0318 S32: 0.1012 S33: 0.0045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48578 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.651 REMARK 200 RESOLUTION RANGE LOW (A) : 46.121 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE , PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.09467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.04733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.09467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.04733 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.09467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 25.04733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.09467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.04733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.45750 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 116.83982 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 752 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 756 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 758 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 512 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 -134.19 51.46 REMARK 500 ASN A 343 -124.91 50.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 401 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 717 O REMARK 620 2 HOH A 716 O 94.5 REMARK 620 3 CYS A 336 SG 93.6 91.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 405 DBREF 4J8L A 2 361 UNP P45545 YHFS_ECOLI 2 361 SEQADV 4J8L MSE A 1 UNP P45545 EXPRESSION TAG SEQRES 1 A 361 MSE LYS THR PHE PRO LEU GLN SER LEU THR ILE ILE GLU SEQRES 2 A 361 ALA GLN GLN LYS GLN PHE ALA LEU VAL ASP SER ILE CYS SEQRES 3 A 361 ARG HIS PHE PRO GLY SER GLU PHE LEU THR GLY GLY ASP SEQRES 4 A 361 LEU GLY LEU THR PRO GLY LEU ASN GLN PRO ARG VAL THR SEQRES 5 A 361 GLN ARG VAL GLU GLN VAL LEU ALA ASP ALA PHE HIS ALA SEQRES 6 A 361 GLN ALA ALA ALA LEU VAL GLN GLY ALA GLY THR GLY ALA SEQRES 7 A 361 ILE ARG ALA GLY LEU ALA ALA LEU LEU LYS PRO GLY GLN SEQRES 8 A 361 ARG LEU LEU VAL HIS ASP ALA PRO VAL TYR PRO THR THR SEQRES 9 A 361 ARG VAL ILE ILE GLU GLN MSE GLY LEU THR LEU ILE THR SEQRES 10 A 361 VAL ASP PHE ASN ASP LEU SER ALA LEU LYS GLN VAL VAL SEQRES 11 A 361 ASP GLU GLN GLN PRO ASP ALA ALA LEU VAL GLN HIS THR SEQRES 12 A 361 ARG GLN GLN PRO GLN ASP SER TYR VAL LEU ALA ASP VAL SEQRES 13 A 361 LEU ALA THR LEU ARG ALA ALA GLY VAL PRO ALA LEU THR SEQRES 14 A 361 ASP ASP ASN TYR ALA VAL MSE LYS VAL ALA ARG ILE GLY SEQRES 15 A 361 CYS GLU CYS GLY ALA ASN VAL SER THR PHE SER CYS PHE SEQRES 16 A 361 LLP LEU PHE GLY PRO GLU GLY VAL GLY ALA VAL VAL GLY SEQRES 17 A 361 ASP ALA ASP VAL ILE ASN ARG ILE ARG ALA THR LEU TYR SEQRES 18 A 361 SER GLY GLY SER GLN ILE GLN GLY ALA GLN ALA LEU GLU SEQRES 19 A 361 VAL LEU ARG GLY LEU VAL PHE ALA PRO VAL MSE HIS ALA SEQRES 20 A 361 VAL GLN ALA GLY VAL SER GLU ARG LEU LEU ALA LEU LEU SEQRES 21 A 361 ASN GLY GLY ALA VAL PRO GLU VAL LYS SER ALA VAL ILE SEQRES 22 A 361 ALA ASN ALA GLN SER LYS VAL LEU ILE VAL GLU PHE HIS SEQRES 23 A 361 GLN PRO ILE ALA ALA ARG VAL LEU GLU GLU ALA GLN LYS SEQRES 24 A 361 ARG GLY ALA LEU PRO TYR PRO VAL GLY ALA GLU SER LYS SEQRES 25 A 361 TYR GLU ILE PRO PRO LEU PHE TYR ARG LEU SER GLY THR SEQRES 26 A 361 PHE ARG GLN ALA ASN PRO GLN SER GLU HIS CYS ALA ILE SEQRES 27 A 361 ARG ILE ASN PRO ASN ARG SER GLY GLU GLU THR VAL LEU SEQRES 28 A 361 ARG ILE LEU ARG GLU SER ILE ALA SER ILE MODRES 4J8L MSE A 1 MET SELENOMETHIONINE MODRES 4J8L MSE A 111 MET SELENOMETHIONINE MODRES 4J8L MSE A 176 MET SELENOMETHIONINE MODRES 4J8L LLP A 196 LYS MODRES 4J8L MSE A 245 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 111 8 HET MSE A 176 8 HET LLP A 196 24 HET MSE A 245 8 HET NI A 401 1 HET ACY A 402 4 HET ACY A 403 4 HET ACY A 404 4 HET PEG A 405 7 HETNAM MSE SELENOMETHIONINE HETNAM LLP 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL- HETNAM 2 LLP PYRIDIN-4-YLMETHANE) HETNAM NI NICKEL (II) ION HETNAM ACY ACETIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 1 LLP C14 H24 N3 O7 P FORMUL 2 NI NI 2+ FORMUL 3 ACY 3(C2 H4 O2) FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *276(H2 O) HELIX 1 1 THR A 10 PHE A 29 1 20 HELIX 2 2 PRO A 30 LEU A 35 1 6 HELIX 3 3 PRO A 49 PHE A 63 1 15 HELIX 4 4 GLY A 73 LEU A 87 1 15 HELIX 5 5 TYR A 101 GLY A 112 1 12 HELIX 6 6 ASP A 122 GLN A 134 1 13 HELIX 7 7 VAL A 152 ALA A 163 1 12 HELIX 8 8 ILE A 181 CYS A 185 5 5 HELIX 9 9 PHE A 195 PHE A 198 5 4 HELIX 10 10 ASP A 209 LEU A 220 1 12 HELIX 11 11 GLN A 228 GLY A 262 1 35 HELIX 12 12 ILE A 289 ARG A 300 1 12 HELIX 13 13 SER A 323 ASN A 330 1 8 HELIX 14 14 GLN A 332 HIS A 335 5 4 HELIX 15 15 GLY A 346 ILE A 361 1 16 SHEET 1 A 7 ALA A 67 GLN A 72 0 SHEET 2 A 7 VAL A 203 GLY A 208 -1 O GLY A 204 N VAL A 71 SHEET 3 A 7 VAL A 189 SER A 193 -1 N SER A 190 O VAL A 207 SHEET 4 A 7 ALA A 167 ASP A 170 1 N THR A 169 O VAL A 189 SHEET 5 A 7 ALA A 137 GLN A 141 1 N VAL A 140 O LEU A 168 SHEET 6 A 7 ARG A 92 HIS A 96 1 N LEU A 94 O ALA A 137 SHEET 7 A 7 THR A 114 VAL A 118 1 O ILE A 116 N VAL A 95 SHEET 1 B 4 VAL A 268 ASN A 275 0 SHEET 2 B 4 LYS A 279 PHE A 285 -1 O ILE A 282 N VAL A 272 SHEET 3 B 4 ALA A 337 ASN A 341 -1 O ILE A 340 N LEU A 281 SHEET 4 B 4 LEU A 318 TYR A 320 -1 N LEU A 318 O ASN A 341 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C GLN A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N GLY A 112 1555 1555 1.33 LINK C VAL A 175 N MSE A 176 1555 1555 1.34 LINK C MSE A 176 N LYS A 177 1555 1555 1.33 LINK C PHE A 195 N LLP A 196 1555 1555 1.34 LINK C LLP A 196 N LEU A 197 1555 1555 1.33 LINK C VAL A 244 N MSE A 245 1555 1555 1.33 LINK C MSE A 245 N HIS A 246 1555 1555 1.33 LINK NI NI A 401 O HOH A 717 1555 1555 1.82 LINK NI NI A 401 O HOH A 716 1555 1555 2.07 LINK SG CYS A 336 NI NI A 401 1555 1555 2.23 CISPEP 1 ALA A 276 GLN A 277 0 -4.17 CISPEP 2 GLY A 308 ALA A 309 0 -3.32 SITE 1 AC1 7 PHE A 285 HIS A 286 GLN A 287 PRO A 288 SITE 2 AC1 7 CYS A 336 HOH A 716 HOH A 717 SITE 1 AC2 7 ALA A 276 ILE A 282 LEU A 322 SER A 323 SITE 2 AC2 7 PHE A 326 ARG A 339 HOH A 723 SITE 1 AC3 2 ARG A 50 ARG A 54 SITE 1 AC4 7 SER A 8 LYS A 177 LYS A 279 HOH A 564 SITE 2 AC4 7 HOH A 578 HOH A 688 HOH A 727 SITE 1 AC5 7 TYR A 173 TYR A 320 ARG A 339 ASN A 341 SITE 2 AC5 7 HOH A 616 HOH A 746 HOH A 766 CRYST1 134.915 134.915 75.142 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007412 0.004279 0.000000 0.00000 SCALE2 0.000000 0.008559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013308 0.00000 HETATM 1 N MSE A 1 40.286 29.089 30.536 1.00 59.96 N ANISOU 1 N MSE A 1 8255 6271 8256 1617 1819 -998 N HETATM 2 CA MSE A 1 38.983 28.506 30.838 1.00 58.24 C ANISOU 2 CA MSE A 1 8319 5909 7900 1510 1782 -912 C HETATM 3 C MSE A 1 37.851 29.441 30.431 1.00 53.35 C ANISOU 3 C MSE A 1 7770 5333 7169 1246 1759 -920 C HETATM 4 O MSE A 1 38.056 30.641 30.252 1.00 54.40 O ANISOU 4 O MSE A 1 7747 5611 7310 1185 1743 -941 O HETATM 5 CB MSE A 1 38.866 28.198 32.326 1.00 56.79 C ANISOU 5 CB MSE A 1 8158 5688 7731 1706 1625 -794 C HETATM 6 CG MSE A 1 38.811 29.436 33.192 1.00 58.78 C ANISOU 6 CG MSE A 1 8230 6098 8004 1744 1454 -750 C HETATM 7 SE MSE A 1 38.297 29.018 35.015 0.75 72.23 SE ANISOU 7 SE MSE A 1 10116 7714 9612 1940 1271 -566 SE HETATM 8 CE MSE A 1 38.195 30.801 35.699 1.00 37.75 C ANISOU 8 CE MSE A 1 5502 3579 5261 1925 1065 -555 C