HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-FEB-13 4J8Q TITLE CRYSTAL STRUCTURE OF A NIGD-LIKE PROTEIN (BF0700) FROM BACTEROIDES TITLE 2 FRAGILIS NCTC 9343 AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: ATCC 25285 / NCTC 9343; SOURCE 5 GENE: BF0700, BF9343_0666; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NIGD-LIKE PROTEIN, PF12667 FAMILY, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4J8Q 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4J8Q 1 JRNL REVDAT 3 15-NOV-17 4J8Q 1 REMARK REVDAT 2 24-DEC-14 4J8Q 1 TITLE REVDAT 1 06-MAR-13 4J8Q 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BF0700) FROM JRNL TITL 2 BACTEROIDES FRAGILIS NCTC 9343 AT 2.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 9409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 647 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1541 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.51000 REMARK 3 B22 (A**2) : -1.60000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.403 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.275 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1584 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1465 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2151 ; 1.156 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3354 ; 0.687 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 193 ; 6.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;30.509 ;24.938 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 244 ;16.255 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;12.637 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 233 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1824 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 775 ; 3.573 ; 5.393 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 774 ; 3.551 ; 5.386 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 964 ; 5.868 ;10.012 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9020 46.0960 40.5030 REMARK 3 T TENSOR REMARK 3 T11: 0.1498 T22: 0.1434 REMARK 3 T33: 0.1538 T12: 0.0157 REMARK 3 T13: 0.0136 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0758 L22: 2.6778 REMARK 3 L33: 1.3792 L12: -0.3548 REMARK 3 L13: 0.2886 L23: -1.4888 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.0068 S13: 0.0361 REMARK 3 S21: 0.0711 S22: -0.0053 S23: -0.0649 REMARK 3 S31: -0.0299 S32: 0.0215 S33: -0.0175 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3270 26.4420 51.9680 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.1877 REMARK 3 T33: 0.1791 T12: 0.0850 REMARK 3 T13: -0.0801 T23: 0.0501 REMARK 3 L TENSOR REMARK 3 L11: 2.1350 L22: 0.1649 REMARK 3 L33: 0.7392 L12: 0.5407 REMARK 3 L13: 0.8276 L23: 0.1290 REMARK 3 S TENSOR REMARK 3 S11: 0.1134 S12: -0.4540 S13: -0.1219 REMARK 3 S21: -0.0461 S22: -0.1547 S23: -0.0091 REMARK 3 S31: 0.2314 S32: -0.0286 S33: 0.0414 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7570 27.8800 45.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.1360 REMARK 3 T33: 0.1417 T12: 0.0308 REMARK 3 T13: -0.0318 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 3.1284 L22: 1.8879 REMARK 3 L33: 0.3078 L12: 0.4664 REMARK 3 L13: -0.8190 L23: 0.2860 REMARK 3 S TENSOR REMARK 3 S11: -0.0649 S12: 0.1157 S13: -0.2750 REMARK 3 S21: 0.0838 S22: 0.0163 S23: -0.1763 REMARK 3 S31: 0.0206 S32: -0.0365 S33: 0.0486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. 1,2-ETHANEDIOL (EDO) FROM THE CRYOPROTECTION REMARK 3 SOLUTION IS MODELED. REMARK 4 REMARK 4 4J8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97944,0.97853 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9419 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.767 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM NITRATE, 20% REMARK 280 POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.03600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.03600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.77800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.21250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.77800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.21250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.03600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.77800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.21250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.03600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.77800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.21250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 84.10800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 425 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 CYS A 22 REMARK 465 ASP A 23 REMARK 465 ASP A 24 REMARK 465 ASN A 25 REMARK 465 PRO A 146 REMARK 465 VAL A 147 REMARK 465 LYS A 148 REMARK 465 GLU A 149 REMARK 465 VAL A 184 REMARK 465 THR A 185 REMARK 465 ALA A 186 REMARK 465 ARG A 187 REMARK 465 GLY A 228 REMARK 465 GLN A 229 REMARK 465 SER A 230 REMARK 465 MSE A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 GLU A 234 REMARK 465 ALA A 235 REMARK 465 LYS A 236 REMARK 465 GLN A 237 REMARK 465 VAL A 238 REMARK 465 THR A 239 REMARK 465 LEU A 240 REMARK 465 SER A 241 REMARK 465 ASP A 242 REMARK 465 GLU A 243 REMARK 465 VAL A 244 REMARK 465 GLN A 245 REMARK 465 ILE A 246 REMARK 465 LYS A 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 ASP A 168 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 120 60.68 -162.43 REMARK 500 ARG A 142 -74.38 63.82 REMARK 500 ASP A 168 31.91 86.95 REMARK 500 ASP A 169 -13.39 -152.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-393152 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 22-247 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4J8Q A 22 247 UNP Q5LHD5 Q5LHD5_BACFN 22 247 SEQADV 4J8Q GLY A 0 UNP Q5LHD5 EXPRESSION TAG SEQRES 1 A 227 GLY CYS ASP ASP ASN ASP GLY TYR SER LEU GLY ASP ILE SEQRES 2 A 227 ALA VAL ASP TRP ALA THR VAL ARG VAL VAL GLY GLY ASP SEQRES 3 A 227 THR TYR SER LEU ASN ALA ASP ARG TRP GLY THR LEU TRP SEQRES 4 A 227 PRO ALA ALA THR ALA ILE PRO PHE TYR LYS PRO ILE ASP SEQRES 5 A 227 GLY GLN ARG VAL ILE THR TYR PHE ASN PRO LEU TYR ASP SEQRES 6 A 227 ASN TYR GLU GLY TYR ASP HIS ALA VAL LYS VAL GLU HIS SEQRES 7 A 227 ASN TYR ASN VAL LEU THR LYS GLN VAL GLU ASP LEU THR SEQRES 8 A 227 ALA GLU ASN GLU SER GLU PHE GLY ASN ASP PRO VAL TRP SEQRES 9 A 227 VAL ASN LYS ASP MSE MSE TRP ILE GLY GLY GLY TYR LEU SEQRES 10 A 227 ASN VAL ILE PHE ARG GLN ASN LEU PRO VAL LYS GLU LYS SEQRES 11 A 227 HIS LEU VAL SER LEU VAL ARG ASP MSE ARG ALA THR ALA SEQRES 12 A 227 ALA GLU GLY GLU ASP ASP GLY TYR ILE HIS LEU GLU LEU SEQRES 13 A 227 ARG TYR LYS THR TYR ASP ASP VAL THR ALA ARG GLN ALA SEQRES 14 A 227 ASN GLY ALA VAL SER PHE ASN LEU ASN SER LEU ASP LEU SEQRES 15 A 227 THR GLY LYS LYS GLY ILE LYS VAL LYS LEU ASN SER VAL SEQRES 16 A 227 LYS ASP GLY GLU THR GLU VAL VAL PHE ASN LEU LYS GLY SEQRES 17 A 227 GLN SER MSE PRO GLU GLU ALA LYS GLN VAL THR LEU SER SEQRES 18 A 227 ASP GLU VAL GLN ILE LYS MODRES 4J8Q MSE A 129 MET SELENOMETHIONINE MODRES 4J8Q MSE A 130 MET SELENOMETHIONINE MODRES 4J8Q MSE A 159 MET SELENOMETHIONINE HET MSE A 129 8 HET MSE A 130 8 HET MSE A 159 8 HET EDO A 300 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *52(H2 O) SHEET 1 A 9 ASP A 128 GLY A 133 0 SHEET 2 A 9 TYR A 136 PHE A 141 -1 O ASN A 138 N TRP A 131 SHEET 3 A 9 GLY A 191 ASN A 196 -1 O VAL A 193 N VAL A 139 SHEET 4 A 9 TYR A 90 GLN A 106 1 N LEU A 103 O SER A 194 SHEET 5 A 9 ARG A 75 TYR A 87 -1 N TYR A 79 O GLU A 97 SHEET 6 A 9 ALA A 34 GLY A 44 -1 N ALA A 38 O VAL A 76 SHEET 7 A 9 THR A 47 ALA A 52 -1 O ASN A 51 N THR A 39 SHEET 8 A 9 GLY A 56 THR A 63 -1 O LEU A 58 N LEU A 50 SHEET 9 A 9 TYR A 90 GLN A 106 1 O HIS A 92 N TRP A 59 SHEET 1 B 5 GLU A 108 LEU A 110 0 SHEET 2 B 5 HIS A 151 ASP A 158 1 O ARG A 157 N LEU A 110 SHEET 3 B 5 TYR A 171 THR A 180 -1 O GLU A 175 N VAL A 156 SHEET 4 B 5 GLY A 207 SER A 214 1 O LYS A 209 N ILE A 172 SHEET 5 B 5 GLY A 218 ASN A 225 -1 O THR A 220 N LEU A 212 LINK C ASP A 128 N MSE A 129 1555 1555 1.34 LINK C MSE A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N TRP A 131 1555 1555 1.34 LINK C ASP A 158 N MSE A 159 1555 1555 1.34 LINK C MSE A 159 N ARG A 160 1555 1555 1.33 SITE 1 AC1 5 LEU A 103 LYS A 105 HIS A 151 LEU A 152 SITE 2 AC1 5 VAL A 153 CRYST1 79.556 124.425 56.072 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017834 0.00000