HEADER TRANSFERASE 15-FEB-13 4J96 TITLE CRYSTAL STRUCTURE OF FGF RECEPTOR 2 (FGFR2) KINASE DOMAIN HARBORING TITLE 2 THE PATHOGENIC GAIN-OF-FUNCTION K659M MUTATION IDENTIFIED IN CERVICAL TITLE 3 CANCER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HUMAN FGF RECEPTOR 2 KINASE DOMAIN (UNP RESIDUES 458-768); COMPND 5 SYNONYM: FGFR-2, K-SAM, KGFR, KERATINOCYTE GROWTH FACTOR RECEPTOR; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BEK, FGFR2, KGFR, KSAM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS-S KEYWDS KINASE DOMAIN FOLD CONSISTING OF N- AND C-LOBES, RECEPTOR TYROSINE KEYWDS 2 KINASE, ATP BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.CHEN,M.MOHAMMADI REVDAT 4 20-SEP-23 4J96 1 REMARK SEQADV REVDAT 3 28-DEC-16 4J96 1 TITLE REVDAT 2 21-AUG-13 4J96 1 JRNL REVDAT 1 07-AUG-13 4J96 0 JRNL AUTH H.CHEN,Z.HUANG,K.DUTTA,S.BLAIS,T.A.NEUBERT,X.LI,D.COWBURN, JRNL AUTH 2 N.J.TRAASETH,M.MOHAMMADI JRNL TITL CRACKING THE MOLECULAR ORIGIN OF INTRINSIC TYROSINE KINASE JRNL TITL 2 ACTIVITY THROUGH ANALYSIS OF PATHOGENIC GAIN-OF-FUNCTION JRNL TITL 3 MUTATIONS. JRNL REF CELL REP V. 4 376 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 23871672 JRNL DOI 10.1016/J.CELREP.2013.06.025 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5594 - 5.5339 0.98 2912 154 0.1750 0.2079 REMARK 3 2 5.5339 - 4.3934 1.00 2773 148 0.1549 0.1806 REMARK 3 3 4.3934 - 3.8383 1.00 2723 145 0.1465 0.1821 REMARK 3 4 3.8383 - 3.4875 0.99 2674 142 0.1642 0.2337 REMARK 3 5 3.4875 - 3.2376 1.00 2686 143 0.1864 0.2345 REMARK 3 6 3.2376 - 3.0467 1.00 2691 141 0.2024 0.2402 REMARK 3 7 3.0467 - 2.8942 1.00 2650 140 0.2038 0.2498 REMARK 3 8 2.8942 - 2.7682 1.00 2649 142 0.2042 0.2648 REMARK 3 9 2.7682 - 2.6616 1.00 2639 140 0.1985 0.2378 REMARK 3 10 2.6616 - 2.5698 1.00 2646 141 0.1917 0.2225 REMARK 3 11 2.5698 - 2.4895 1.00 2631 140 0.1812 0.2319 REMARK 3 12 2.4895 - 2.4183 1.00 2644 139 0.1823 0.2490 REMARK 3 13 2.4183 - 2.3546 1.00 2610 140 0.1967 0.2227 REMARK 3 14 2.3546 - 2.2972 1.00 2619 139 0.2178 0.3101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5020 REMARK 3 ANGLE : 1.399 6818 REMARK 3 CHIRALITY : 0.083 743 REMARK 3 PLANARITY : 0.007 877 REMARK 3 DIHEDRAL : 14.836 1930 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 40.5622 16.6883 20.9226 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.2068 REMARK 3 T33: 0.1555 T12: 0.0313 REMARK 3 T13: 0.0101 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.9871 L22: 0.4140 REMARK 3 L33: 0.7413 L12: 0.1321 REMARK 3 L13: -0.3046 L23: 0.0685 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.0366 S13: 0.0626 REMARK 3 S21: -0.0252 S22: 0.0186 S23: -0.0743 REMARK 3 S31: 0.0341 S32: 0.0899 S33: 0.0147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL BENDER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.297 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 25.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 43.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49800 REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2PVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH7.5, 25% PEG 4000, 200MM REMARK 280 (NH4)2SO4, 100MM HOC(COONA)(CH2COONA)2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.35800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 233.03700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.67900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 155.35800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.67900 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 233.03700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 445 REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 SER A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 SER A 455 REMARK 465 GLN A 456 REMARK 465 ASP A 457 REMARK 465 PRO A 458 REMARK 465 MET A 459 REMARK 465 LEU A 460 REMARK 465 GLY A 583 REMARK 465 MET A 584 REMARK 465 GLU A 585 REMARK 465 TYR A 586 REMARK 465 GLU A 767 REMARK 465 GLU A 768 REMARK 465 MET B 445 REMARK 465 GLY B 446 REMARK 465 SER B 447 REMARK 465 SER B 448 REMARK 465 HIS B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 465 SER B 455 REMARK 465 GLN B 456 REMARK 465 ASP B 457 REMARK 465 PRO B 458 REMARK 465 MET B 459 REMARK 465 LEU B 460 REMARK 465 ALA B 461 REMARK 465 GLU B 767 REMARK 465 GLU B 768 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 505 CG CD CE NZ REMARK 470 LYS A 507 CG CD CE NZ REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 LYS A 545 CG CD CE NZ REMARK 470 SER A 587 OG REMARK 470 ARG A 592 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 467 CG CD OE1 OE2 REMARK 470 LYS B 507 CG CD CE NZ REMARK 470 LYS B 509 CG CD CE NZ REMARK 470 LYS B 545 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 644 O HOH A 971 2.12 REMARK 500 OE2 GLU B 499 O HOH B 974 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 625 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 625 -15.27 77.15 REMARK 500 ALA A 628 158.43 179.75 REMARK 500 ASP A 644 75.05 55.13 REMARK 500 ASP A 655 -46.74 77.94 REMARK 500 ARG B 625 -13.66 76.00 REMARK 500 ASP B 644 77.75 49.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PSQ RELATED DB: PDB REMARK 900 UNPHOSPHORYLATED UNACTIVATED WILD TYPE FGFR2 KINASE DOMAIN REMARK 900 RELATED ID: 2PVF RELATED DB: PDB REMARK 900 PHOSPHORYLATED ACTIVATED FGFR2 KINASE DOMAIN REMARK 900 RELATED ID: 4J95 RELATED DB: PDB REMARK 900 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659N MUTATION IN REMARK 900 SPACE GROUP C2 REMARK 900 RELATED ID: 4J97 RELATED DB: PDB REMARK 900 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659E MUTATION REMARK 900 RELATED ID: 4J98 RELATED DB: PDB REMARK 900 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659Q MUTATION REMARK 900 RELATED ID: 4J99 RELATED DB: PDB REMARK 900 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659T MUTATION DBREF 4J96 A 458 768 UNP P21802 FGFR2_HUMAN 458 768 DBREF 4J96 B 458 768 UNP P21802 FGFR2_HUMAN 458 768 SEQADV 4J96 MET A 445 UNP P21802 EXPRESSION TAG SEQADV 4J96 GLY A 446 UNP P21802 EXPRESSION TAG SEQADV 4J96 SER A 447 UNP P21802 EXPRESSION TAG SEQADV 4J96 SER A 448 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS A 449 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS A 450 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS A 451 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS A 452 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS A 453 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS A 454 UNP P21802 EXPRESSION TAG SEQADV 4J96 SER A 455 UNP P21802 EXPRESSION TAG SEQADV 4J96 GLN A 456 UNP P21802 EXPRESSION TAG SEQADV 4J96 ASP A 457 UNP P21802 EXPRESSION TAG SEQADV 4J96 ALA A 491 UNP P21802 CYS 491 ENGINEERED MUTATION SEQADV 4J96 MET A 659 UNP P21802 LYS 659 ENGINEERED MUTATION SEQADV 4J96 MET B 445 UNP P21802 EXPRESSION TAG SEQADV 4J96 GLY B 446 UNP P21802 EXPRESSION TAG SEQADV 4J96 SER B 447 UNP P21802 EXPRESSION TAG SEQADV 4J96 SER B 448 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS B 449 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS B 450 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS B 451 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS B 452 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS B 453 UNP P21802 EXPRESSION TAG SEQADV 4J96 HIS B 454 UNP P21802 EXPRESSION TAG SEQADV 4J96 SER B 455 UNP P21802 EXPRESSION TAG SEQADV 4J96 GLN B 456 UNP P21802 EXPRESSION TAG SEQADV 4J96 ASP B 457 UNP P21802 EXPRESSION TAG SEQADV 4J96 ALA B 491 UNP P21802 CYS 491 ENGINEERED MUTATION SEQADV 4J96 MET B 659 UNP P21802 LYS 659 ENGINEERED MUTATION SEQRES 1 A 324 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 324 PRO MET LEU ALA GLY VAL SER GLU TYR GLU LEU PRO GLU SEQRES 3 A 324 ASP PRO LYS TRP GLU PHE PRO ARG ASP LYS LEU THR LEU SEQRES 4 A 324 GLY LYS PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL SEQRES 5 A 324 MET ALA GLU ALA VAL GLY ILE ASP LYS ASP LYS PRO LYS SEQRES 6 A 324 GLU ALA VAL THR VAL ALA VAL LYS MET LEU LYS ASP ASP SEQRES 7 A 324 ALA THR GLU LYS ASP LEU SER ASP LEU VAL SER GLU MET SEQRES 8 A 324 GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE SEQRES 9 A 324 ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR SEQRES 10 A 324 VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU SEQRES 11 A 324 TYR LEU ARG ALA ARG ARG PRO PRO GLY MET GLU TYR SER SEQRES 12 A 324 TYR ASP ILE ASN ARG VAL PRO GLU GLU GLN MET THR PHE SEQRES 13 A 324 LYS ASP LEU VAL SER CYS THR TYR GLN LEU ALA ARG GLY SEQRES 14 A 324 MET GLU TYR LEU ALA SER GLN LYS CYS ILE HIS ARG ASP SEQRES 15 A 324 LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASN ASN VAL SEQRES 16 A 324 MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE ASN SEQRES 17 A 324 ASN ILE ASP TYR TYR LYS MET THR THR ASN GLY ARG LEU SEQRES 18 A 324 PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG SEQRES 19 A 324 VAL TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL SEQRES 20 A 324 LEU MET TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR SEQRES 21 A 324 PRO GLY ILE PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS SEQRES 22 A 324 GLU GLY HIS ARG MET ASP LYS PRO ALA ASN CYS THR ASN SEQRES 23 A 324 GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL SEQRES 24 A 324 PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP SEQRES 25 A 324 LEU ASP ARG ILE LEU THR LEU THR THR ASN GLU GLU SEQRES 1 B 324 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 324 PRO MET LEU ALA GLY VAL SER GLU TYR GLU LEU PRO GLU SEQRES 3 B 324 ASP PRO LYS TRP GLU PHE PRO ARG ASP LYS LEU THR LEU SEQRES 4 B 324 GLY LYS PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL SEQRES 5 B 324 MET ALA GLU ALA VAL GLY ILE ASP LYS ASP LYS PRO LYS SEQRES 6 B 324 GLU ALA VAL THR VAL ALA VAL LYS MET LEU LYS ASP ASP SEQRES 7 B 324 ALA THR GLU LYS ASP LEU SER ASP LEU VAL SER GLU MET SEQRES 8 B 324 GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE SEQRES 9 B 324 ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR SEQRES 10 B 324 VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU SEQRES 11 B 324 TYR LEU ARG ALA ARG ARG PRO PRO GLY MET GLU TYR SER SEQRES 12 B 324 TYR ASP ILE ASN ARG VAL PRO GLU GLU GLN MET THR PHE SEQRES 13 B 324 LYS ASP LEU VAL SER CYS THR TYR GLN LEU ALA ARG GLY SEQRES 14 B 324 MET GLU TYR LEU ALA SER GLN LYS CYS ILE HIS ARG ASP SEQRES 15 B 324 LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASN ASN VAL SEQRES 16 B 324 MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE ASN SEQRES 17 B 324 ASN ILE ASP TYR TYR LYS MET THR THR ASN GLY ARG LEU SEQRES 18 B 324 PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG SEQRES 19 B 324 VAL TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL SEQRES 20 B 324 LEU MET TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR SEQRES 21 B 324 PRO GLY ILE PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS SEQRES 22 B 324 GLU GLY HIS ARG MET ASP LYS PRO ALA ASN CYS THR ASN SEQRES 23 B 324 GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL SEQRES 24 B 324 PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP SEQRES 25 B 324 LEU ASP ARG ILE LEU THR LEU THR THR ASN GLU GLU HET SO4 A 801 5 HET FLC A 802 18 HET SO4 B 801 5 HET SO4 B 802 5 HET ACP B 803 48 HET FLC B 804 18 HET MG B 805 1 HETNAM SO4 SULFATE ION HETNAM FLC CITRATE ANION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 FLC 2(C6 H5 O7 3-) FORMUL 7 ACP C11 H18 N5 O12 P3 FORMUL 9 MG MG 2+ FORMUL 10 HOH *183(H2 O) HELIX 1 1 PRO A 477 ASP A 479 5 3 HELIX 2 2 THR A 524 GLY A 542 1 19 HELIX 3 3 ASN A 571 ALA A 578 1 8 HELIX 4 4 VAL A 593 GLN A 597 5 5 HELIX 5 5 THR A 599 GLN A 620 1 22 HELIX 6 6 ALA A 628 ARG A 630 5 3 HELIX 7 7 ASP A 644 ALA A 648 5 5 HELIX 8 8 PRO A 666 MET A 670 5 5 HELIX 9 9 ALA A 671 ARG A 678 1 8 HELIX 10 10 THR A 681 THR A 698 1 18 HELIX 11 11 PRO A 708 GLU A 718 1 11 HELIX 12 12 THR A 729 TRP A 740 1 12 HELIX 13 13 VAL A 743 ARG A 747 5 5 HELIX 14 14 THR A 749 ASN A 766 1 18 HELIX 15 15 PRO B 477 ASP B 479 5 3 HELIX 16 16 THR B 524 GLY B 542 1 19 HELIX 17 17 ASN B 571 ALA B 578 1 8 HELIX 18 18 THR B 599 GLN B 620 1 22 HELIX 19 19 ALA B 628 ARG B 630 5 3 HELIX 20 20 PRO B 666 MET B 670 5 5 HELIX 21 21 ALA B 671 ARG B 678 1 8 HELIX 22 22 THR B 681 THR B 698 1 18 HELIX 23 23 PRO B 708 GLU B 718 1 11 HELIX 24 24 THR B 729 TRP B 740 1 12 HELIX 25 25 VAL B 743 ARG B 747 5 5 HELIX 26 26 THR B 749 ASN B 766 1 18 SHEET 1 A 5 LEU A 481 GLU A 489 0 SHEET 2 A 5 GLN A 494 VAL A 501 -1 O MET A 497 N GLY A 484 SHEET 3 A 5 ALA A 511 MET A 518 -1 O VAL A 512 N ALA A 500 SHEET 4 A 5 TYR A 561 GLU A 565 -1 O VAL A 564 N ALA A 515 SHEET 5 A 5 LEU A 550 CYS A 554 -1 N LEU A 551 O ILE A 563 SHEET 1 B 2 CYS A 622 ILE A 623 0 SHEET 2 B 2 ARG A 649 ASP A 650 -1 O ARG A 649 N ILE A 623 SHEET 1 C 2 VAL A 632 VAL A 634 0 SHEET 2 C 2 MET A 640 ILE A 642 -1 O LYS A 641 N LEU A 633 SHEET 1 D 2 TYR A 657 LYS A 658 0 SHEET 2 D 2 VAL A 679 TYR A 680 -1 O TYR A 680 N TYR A 657 SHEET 1 E 5 LEU B 481 GLU B 489 0 SHEET 2 E 5 GLN B 494 VAL B 501 -1 O VAL B 495 N LEU B 487 SHEET 3 E 5 ALA B 511 MET B 518 -1 O VAL B 512 N ALA B 500 SHEET 4 E 5 TYR B 561 GLU B 565 -1 O VAL B 562 N LYS B 517 SHEET 5 E 5 LEU B 550 CYS B 554 -1 N LEU B 551 O ILE B 563 SHEET 1 F 2 CYS B 622 ILE B 623 0 SHEET 2 F 2 ARG B 649 ASP B 650 -1 O ARG B 649 N ILE B 623 SHEET 1 G 2 VAL B 632 VAL B 634 0 SHEET 2 G 2 MET B 640 ILE B 642 -1 O LYS B 641 N LEU B 633 SHEET 1 H 2 TYR B 657 LYS B 658 0 SHEET 2 H 2 VAL B 679 TYR B 680 -1 O TYR B 680 N TYR B 657 LINK O1A ACP B 803 MG MG B 805 1555 1555 2.11 SITE 1 AC1 3 ARG A 577 ARG A 580 GLY A 701 SITE 1 AC2 9 LYS A 526 ARG A 625 ARG A 649 TYR A 657 SITE 2 AC2 9 MET A 659 THR A 660 GLY A 663 ARG A 664 SITE 3 AC2 9 LEU A 665 SITE 1 AC3 4 ARG B 577 ARG B 580 GLY B 701 SER B 702 SITE 1 AC4 3 THR B 635 ASN B 637 VAL B 639 SITE 1 AC5 17 LEU B 487 GLY B 488 GLU B 489 GLY B 490 SITE 2 AC5 17 ALA B 491 ALA B 515 VAL B 564 GLU B 565 SITE 3 AC5 17 TYR B 566 ALA B 567 ASN B 571 LEU B 633 SITE 4 AC5 17 ASP B 644 MG B 805 HOH B 988 HOH B 989 SITE 5 AC5 17 HOH B 990 SITE 1 AC6 7 LYS B 526 ARG B 625 ARG B 649 TYR B 657 SITE 2 AC6 7 THR B 660 GLY B 663 ARG B 664 SITE 1 AC7 3 LYS B 517 ASP B 644 ACP B 803 CRYST1 73.852 73.852 310.716 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013541 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003218 0.00000