HEADER TRANSFERASE 15-FEB-13 4J98 TITLE CRYSTAL STRUCTURE OF FGF RECEPTOR 2 (FGFR2) KINASE DOMAIN HARBORING TITLE 2 THE GAIN-OF-FUNCTION K659Q MUTATION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HUMAN FGF RECEPTOR 2 KINASE DOMAIN (UNP RESIDUES 458-768); COMPND 5 SYNONYM: FGFR-2, K-SAM, KGFR, KERATINOCYTE GROWTH FACTOR RECEPTOR; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BEK, FGFR2, KGFR, KSAM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS-S KEYWDS FGF RECEPTOR, RECEPTOR TYROSINE KINASE, GAIN-OF-FUNCTION MUTATION, KEYWDS 2 ATP BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.HUANG,H.CHEN,M.MOHAMMADI REVDAT 4 20-SEP-23 4J98 1 REMARK SEQADV REVDAT 3 28-DEC-16 4J98 1 TITLE REVDAT 2 21-AUG-13 4J98 1 JRNL REVDAT 1 07-AUG-13 4J98 0 JRNL AUTH H.CHEN,Z.HUANG,K.DUTTA,S.BLAIS,T.A.NEUBERT,X.LI,D.COWBURN, JRNL AUTH 2 N.J.TRAASETH,M.MOHAMMADI JRNL TITL CRACKING THE MOLECULAR ORIGIN OF INTRINSIC TYROSINE KINASE JRNL TITL 2 ACTIVITY THROUGH ANALYSIS OF PATHOGENIC GAIN-OF-FUNCTION JRNL TITL 3 MUTATIONS. JRNL REF CELL REP V. 4 376 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 23871672 JRNL DOI 10.1016/J.CELREP.2013.06.025 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 38193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4490 - 5.5559 0.90 2649 146 0.1824 0.2242 REMARK 3 2 5.5559 - 4.4113 0.91 2515 140 0.1669 0.1926 REMARK 3 3 4.4113 - 3.8540 0.88 2385 131 0.1729 0.2154 REMARK 3 4 3.8540 - 3.5018 0.94 2510 139 0.1821 0.2299 REMARK 3 5 3.5018 - 3.2509 0.97 2608 144 0.1933 0.2236 REMARK 3 6 3.2509 - 3.0593 0.99 2618 145 0.2059 0.2460 REMARK 3 7 3.0593 - 2.9061 0.99 2641 146 0.1990 0.2355 REMARK 3 8 2.9061 - 2.7797 0.99 2615 144 0.2011 0.2668 REMARK 3 9 2.7797 - 2.6727 1.00 2630 145 0.1927 0.2749 REMARK 3 10 2.6727 - 2.5804 1.00 2608 145 0.1895 0.2773 REMARK 3 11 2.5804 - 2.4998 1.00 2615 144 0.1881 0.2234 REMARK 3 12 2.4998 - 2.4283 1.00 2611 145 0.1878 0.2607 REMARK 3 13 2.4283 - 2.3644 1.00 2608 144 0.2028 0.2761 REMARK 3 14 2.3644 - 2.3067 0.99 2580 142 0.2035 0.2901 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4992 REMARK 3 ANGLE : 1.162 6776 REMARK 3 CHIRALITY : 0.076 739 REMARK 3 PLANARITY : 0.005 868 REMARK 3 DIHEDRAL : 15.014 1892 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 40.6993 16.9080 21.1350 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.1597 REMARK 3 T33: 0.1310 T12: 0.0225 REMARK 3 T13: 0.0069 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.5165 L22: 0.3371 REMARK 3 L33: 0.4890 L12: 0.1063 REMARK 3 L13: -0.0739 L23: 0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.0496 S13: 0.0526 REMARK 3 S21: -0.0106 S22: 0.0037 S23: -0.0462 REMARK 3 S31: 0.0227 S32: 0.0598 S33: 0.0033 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000077755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 33.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35500 REMARK 200 FOR SHELL : 8.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2PVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH7.5, 25% PEG 4000, 200MM REMARK 280 (NH4)2SO4, 100MM HOC(COONA)(CH2COONA)2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 156.87450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 235.31175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.43725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 156.87450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.43725 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 235.31175 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 445 REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 SER A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 SER A 455 REMARK 465 GLN A 456 REMARK 465 ASP A 457 REMARK 465 PRO A 458 REMARK 465 MET A 459 REMARK 465 LEU A 460 REMARK 465 THR A 765 REMARK 465 ASN A 766 REMARK 465 GLU A 767 REMARK 465 GLU A 768 REMARK 465 MET B 445 REMARK 465 GLY B 446 REMARK 465 SER B 447 REMARK 465 SER B 448 REMARK 465 HIS B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 465 SER B 455 REMARK 465 GLN B 456 REMARK 465 ASP B 457 REMARK 465 PRO B 458 REMARK 465 MET B 459 REMARK 465 LEU B 460 REMARK 465 THR B 765 REMARK 465 ASN B 766 REMARK 465 GLU B 767 REMARK 465 GLU B 768 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 505 CG CD CE NZ REMARK 470 LYS A 507 CG CD CE NZ REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 LYS A 545 CG CD CE NZ REMARK 470 GLU A 585 CG CD OE1 OE2 REMARK 470 TYR A 586 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 467 CG CD OE1 OE2 REMARK 470 LYS B 507 CG CD CE NZ REMARK 470 LYS B 509 CG CD CE NZ REMARK 470 ASN B 549 CG OD1 ND2 REMARK 470 GLU B 595 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 SO4 A 801 O HOH A 1005 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 587 NE2 GLN B 597 5655 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 579 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 507 72.22 -118.71 REMARK 500 SER A 587 -139.67 -90.00 REMARK 500 ARG A 625 -13.76 77.10 REMARK 500 ALA A 628 151.29 177.87 REMARK 500 ASP A 644 75.94 55.52 REMARK 500 ALA B 491 -77.65 1.94 REMARK 500 LYS B 507 70.69 -118.14 REMARK 500 ARG B 625 -12.01 74.70 REMARK 500 ALA B 628 149.99 177.81 REMARK 500 ASP B 644 78.98 52.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PSQ RELATED DB: PDB REMARK 900 UNPHOSPHORYLATED UNACTIVATED WILD TYPE FGFR2 KINASE DOMAIN REMARK 900 RELATED ID: 2PVF RELATED DB: PDB REMARK 900 PHOSPHORYLATED ACTIVATED FGFR2 KINASE DOMAIN REMARK 900 RELATED ID: 4J95 RELATED DB: PDB REMARK 900 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659N MUTATION IN REMARK 900 SPACE GROUP C2 REMARK 900 RELATED ID: 4J96 RELATED DB: PDB REMARK 900 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659M MUTATION REMARK 900 RELATED ID: 4J97 RELATED DB: PDB REMARK 900 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659E MUTATION REMARK 900 RELATED ID: 4J99 RELATED DB: PDB REMARK 900 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659T MUTATION DBREF 4J98 A 458 768 UNP P21802 FGFR2_HUMAN 458 768 DBREF 4J98 B 458 768 UNP P21802 FGFR2_HUMAN 458 768 SEQADV 4J98 MET A 445 UNP P21802 EXPRESSION TAG SEQADV 4J98 GLY A 446 UNP P21802 EXPRESSION TAG SEQADV 4J98 SER A 447 UNP P21802 EXPRESSION TAG SEQADV 4J98 SER A 448 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS A 449 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS A 450 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS A 451 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS A 452 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS A 453 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS A 454 UNP P21802 EXPRESSION TAG SEQADV 4J98 SER A 455 UNP P21802 EXPRESSION TAG SEQADV 4J98 GLN A 456 UNP P21802 EXPRESSION TAG SEQADV 4J98 ASP A 457 UNP P21802 EXPRESSION TAG SEQADV 4J98 ALA A 491 UNP P21802 CYS 491 ENGINEERED MUTATION SEQADV 4J98 GLN A 659 UNP P21802 LYS 659 ENGINEERED MUTATION SEQADV 4J98 MET B 445 UNP P21802 EXPRESSION TAG SEQADV 4J98 GLY B 446 UNP P21802 EXPRESSION TAG SEQADV 4J98 SER B 447 UNP P21802 EXPRESSION TAG SEQADV 4J98 SER B 448 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS B 449 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS B 450 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS B 451 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS B 452 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS B 453 UNP P21802 EXPRESSION TAG SEQADV 4J98 HIS B 454 UNP P21802 EXPRESSION TAG SEQADV 4J98 SER B 455 UNP P21802 EXPRESSION TAG SEQADV 4J98 GLN B 456 UNP P21802 EXPRESSION TAG SEQADV 4J98 ASP B 457 UNP P21802 EXPRESSION TAG SEQADV 4J98 ALA B 491 UNP P21802 CYS 491 ENGINEERED MUTATION SEQADV 4J98 GLN B 659 UNP P21802 LYS 659 ENGINEERED MUTATION SEQRES 1 A 324 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 324 PRO MET LEU ALA GLY VAL SER GLU TYR GLU LEU PRO GLU SEQRES 3 A 324 ASP PRO LYS TRP GLU PHE PRO ARG ASP LYS LEU THR LEU SEQRES 4 A 324 GLY LYS PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL SEQRES 5 A 324 MET ALA GLU ALA VAL GLY ILE ASP LYS ASP LYS PRO LYS SEQRES 6 A 324 GLU ALA VAL THR VAL ALA VAL LYS MET LEU LYS ASP ASP SEQRES 7 A 324 ALA THR GLU LYS ASP LEU SER ASP LEU VAL SER GLU MET SEQRES 8 A 324 GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE SEQRES 9 A 324 ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR SEQRES 10 A 324 VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU SEQRES 11 A 324 TYR LEU ARG ALA ARG ARG PRO PRO GLY MET GLU TYR SER SEQRES 12 A 324 TYR ASP ILE ASN ARG VAL PRO GLU GLU GLN MET THR PHE SEQRES 13 A 324 LYS ASP LEU VAL SER CYS THR TYR GLN LEU ALA ARG GLY SEQRES 14 A 324 MET GLU TYR LEU ALA SER GLN LYS CYS ILE HIS ARG ASP SEQRES 15 A 324 LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASN ASN VAL SEQRES 16 A 324 MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE ASN SEQRES 17 A 324 ASN ILE ASP TYR TYR LYS GLN THR THR ASN GLY ARG LEU SEQRES 18 A 324 PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG SEQRES 19 A 324 VAL TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL SEQRES 20 A 324 LEU MET TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR SEQRES 21 A 324 PRO GLY ILE PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS SEQRES 22 A 324 GLU GLY HIS ARG MET ASP LYS PRO ALA ASN CYS THR ASN SEQRES 23 A 324 GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL SEQRES 24 A 324 PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP SEQRES 25 A 324 LEU ASP ARG ILE LEU THR LEU THR THR ASN GLU GLU SEQRES 1 B 324 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 324 PRO MET LEU ALA GLY VAL SER GLU TYR GLU LEU PRO GLU SEQRES 3 B 324 ASP PRO LYS TRP GLU PHE PRO ARG ASP LYS LEU THR LEU SEQRES 4 B 324 GLY LYS PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL SEQRES 5 B 324 MET ALA GLU ALA VAL GLY ILE ASP LYS ASP LYS PRO LYS SEQRES 6 B 324 GLU ALA VAL THR VAL ALA VAL LYS MET LEU LYS ASP ASP SEQRES 7 B 324 ALA THR GLU LYS ASP LEU SER ASP LEU VAL SER GLU MET SEQRES 8 B 324 GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE SEQRES 9 B 324 ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR SEQRES 10 B 324 VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU SEQRES 11 B 324 TYR LEU ARG ALA ARG ARG PRO PRO GLY MET GLU TYR SER SEQRES 12 B 324 TYR ASP ILE ASN ARG VAL PRO GLU GLU GLN MET THR PHE SEQRES 13 B 324 LYS ASP LEU VAL SER CYS THR TYR GLN LEU ALA ARG GLY SEQRES 14 B 324 MET GLU TYR LEU ALA SER GLN LYS CYS ILE HIS ARG ASP SEQRES 15 B 324 LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASN ASN VAL SEQRES 16 B 324 MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE ASN SEQRES 17 B 324 ASN ILE ASP TYR TYR LYS GLN THR THR ASN GLY ARG LEU SEQRES 18 B 324 PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG SEQRES 19 B 324 VAL TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL SEQRES 20 B 324 LEU MET TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR SEQRES 21 B 324 PRO GLY ILE PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS SEQRES 22 B 324 GLU GLY HIS ARG MET ASP LYS PRO ALA ASN CYS THR ASN SEQRES 23 B 324 GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL SEQRES 24 B 324 PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP SEQRES 25 B 324 LEU ASP ARG ILE LEU THR LEU THR THR ASN GLU GLU HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 B 801 5 HET SO4 B 802 5 HET SO4 B 803 5 HET ACP B 804 48 HETNAM SO4 SULFATE ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 ACP C11 H18 N5 O12 P3 FORMUL 9 HOH *230(H2 O) HELIX 1 1 GLY A 462 TYR A 466 5 5 HELIX 2 2 PRO A 477 ASP A 479 5 3 HELIX 3 3 THR A 524 GLY A 542 1 19 HELIX 4 4 ASN A 571 ARG A 579 1 9 HELIX 5 5 VAL A 593 GLN A 597 5 5 HELIX 6 6 THR A 599 GLN A 620 1 22 HELIX 7 7 ALA A 628 ARG A 630 5 3 HELIX 8 8 PRO A 666 MET A 670 5 5 HELIX 9 9 ALA A 671 ARG A 678 1 8 HELIX 10 10 THR A 681 THR A 698 1 18 HELIX 11 11 PRO A 708 GLU A 718 1 11 HELIX 12 12 THR A 729 TRP A 740 1 12 HELIX 13 13 VAL A 743 ARG A 747 5 5 HELIX 14 14 THR A 749 THR A 764 1 16 HELIX 15 15 PRO B 477 ASP B 479 5 3 HELIX 16 16 THR B 524 GLY B 542 1 19 HELIX 17 17 ASN B 571 ALA B 578 1 8 HELIX 18 18 THR B 599 GLN B 620 1 22 HELIX 19 19 ALA B 628 ARG B 630 5 3 HELIX 20 20 PRO B 666 MET B 670 5 5 HELIX 21 21 ALA B 671 ARG B 678 1 8 HELIX 22 22 THR B 681 THR B 698 1 18 HELIX 23 23 PRO B 708 GLU B 718 1 11 HELIX 24 24 THR B 729 TRP B 740 1 12 HELIX 25 25 VAL B 743 ARG B 747 5 5 HELIX 26 26 THR B 749 THR B 764 1 16 SHEET 1 A 5 LEU A 481 GLU A 489 0 SHEET 2 A 5 GLN A 494 VAL A 501 -1 O MET A 497 N GLY A 484 SHEET 3 A 5 ALA A 511 MET A 518 -1 O VAL A 516 N VAL A 496 SHEET 4 A 5 TYR A 561 GLU A 565 -1 O VAL A 564 N ALA A 515 SHEET 5 A 5 LEU A 550 CYS A 554 -1 N LEU A 551 O ILE A 563 SHEET 1 B 2 CYS A 622 ILE A 623 0 SHEET 2 B 2 ARG A 649 ASP A 650 -1 O ARG A 649 N ILE A 623 SHEET 1 C 2 VAL A 632 VAL A 634 0 SHEET 2 C 2 MET A 640 ILE A 642 -1 O LYS A 641 N LEU A 633 SHEET 1 D 2 TYR A 657 LYS A 658 0 SHEET 2 D 2 VAL A 679 TYR A 680 -1 O TYR A 680 N TYR A 657 SHEET 1 E 5 LEU B 481 GLY B 490 0 SHEET 2 E 5 GLY B 493 VAL B 501 -1 O VAL B 495 N LEU B 487 SHEET 3 E 5 ALA B 511 MET B 518 -1 O VAL B 512 N ALA B 500 SHEET 4 E 5 TYR B 561 GLU B 565 -1 O VAL B 564 N ALA B 515 SHEET 5 E 5 LEU B 550 CYS B 554 -1 N LEU B 551 O ILE B 563 SHEET 1 F 2 CYS B 622 ILE B 623 0 SHEET 2 F 2 ARG B 649 ASP B 650 -1 O ARG B 649 N ILE B 623 SHEET 1 G 2 VAL B 632 VAL B 634 0 SHEET 2 G 2 MET B 640 ILE B 642 -1 O LYS B 641 N LEU B 633 SHEET 1 H 2 TYR B 657 LYS B 658 0 SHEET 2 H 2 VAL B 679 TYR B 680 -1 O TYR B 680 N TYR B 657 CISPEP 1 TYR A 586 SER A 587 0 8.02 SITE 1 AC1 6 ARG A 625 ARG A 649 TYR A 657 ARG A 664 SITE 2 AC1 6 HOH A1004 HOH A1005 SITE 1 AC2 3 ARG A 577 ARG A 580 GLY A 701 SITE 1 AC3 8 ARG B 625 ARG B 649 TYR B 657 THR B 660 SITE 2 AC3 8 ARG B 664 HOH B 904 HOH B1003 HOH B1004 SITE 1 AC4 3 ARG B 577 ARG B 580 SER B 702 SITE 1 AC5 3 THR B 635 ASN B 637 VAL B 639 SITE 1 AC6 17 LEU B 487 GLY B 488 GLU B 489 GLY B 490 SITE 2 AC6 17 ALA B 491 ALA B 515 VAL B 564 GLU B 565 SITE 3 AC6 17 TYR B 566 ALA B 567 ASN B 571 ASN B 631 SITE 4 AC6 17 LEU B 633 ASP B 644 HOH B 901 HOH B 936 SITE 5 AC6 17 HOH B 964 CRYST1 73.785 73.785 313.749 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003187 0.00000