HEADER TRANSFERASE/UNKNOWN FUNCTION 16-FEB-13 4J9H TITLE CRYSTAL STRUCTURE OF THE ABL-SH3 DOMAIN COMPLEXED WITH THE DESIGNED TITLE 2 HIGH-AFFINITY PEPTIDE LIGAND P7 AT PH 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1, ABELSON COMPND 6 TYROSINE-PROTEIN KINASE 1, PROTO-ONCOGENE C-ABL, P150; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: P7; COMPND 11 CHAIN: G, H, I, J, K, L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: PBAT4; SOURCE 6 GENE: ABL, ABL1, JTK7; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THIS SEQUENCE HAS BEEN OPTIMIZED TO INCREASE THE SOURCE 13 AFFINITY KEYWDS BETA SHANDWICH, SH3 DOMAIN, KINASE, POLY PROLINE RICH MOTIFS, KEYWDS 2 TRANSFERASE, TRANSFERASE-UNKNOWN FUNCTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMARA-ARTIGAS REVDAT 2 20-SEP-23 4J9H 1 REMARK SEQADV LINK REVDAT 1 29-JAN-14 4J9H 0 JRNL AUTH A.CAMARA-ARTIGAS JRNL TITL CRYSTAL STRUCTURE OF THE ABL-SH3 DOMAIN COMPLEXED WITH THE JRNL TITL 2 DESIGNED HIGH-AFFINITY PEPTIDE LIGAND P7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.CAMARA-ARTIGAS,A.PALENCIA,J.C.MARTINEZ,I.LUQUE,J.A.GAVIRA, REMARK 1 AUTH 2 J.M.GARCIA-RUIZ REMARK 1 TITL CRYSTALLIZATION BY CAPILLARY COUNTER-DIFFUSION AND STRUCTURE REMARK 1 TITL 2 DETERMINATION OF THE N114A MUTANT OF THE SH3 DOMAIN OF ABL REMARK 1 TITL 3 TYROSINE KINASE COMPLEXED WITH A HIGH-AFFINITY PEPTIDE REMARK 1 TITL 4 LIGAND. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 63 646 2007 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 17452790 REMARK 1 DOI 10.1107/S0907444907011109 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.PALENCIA,A.CAMARA-ARTIGAS,M.T.PISABARRO,J.C.MARTINEZ, REMARK 1 AUTH 2 I.LUQUE REMARK 1 TITL ROLE OF INTERFACIAL WATER MOLECULES IN PROLINE-RICH LIGAND REMARK 1 TITL 2 RECOGNITION BY THE SRC HOMOLOGY 3 DOMAIN OF ABL. REMARK 1 REF J.BIOL.CHEM. V. 285 2823 2010 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 19906645 REMARK 1 DOI 10.1074/JBC.M109.048033 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 41520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5233 - 5.1912 1.00 2737 132 0.2276 0.2413 REMARK 3 2 5.1912 - 4.1333 1.00 2708 158 0.1518 0.1750 REMARK 3 3 4.1333 - 3.6146 0.99 2704 132 0.1436 0.1611 REMARK 3 4 3.6146 - 3.2858 0.99 2696 148 0.1378 0.1617 REMARK 3 5 3.2858 - 3.0512 0.98 2732 112 0.1441 0.1942 REMARK 3 6 3.0512 - 2.8719 0.98 2645 139 0.1416 0.1908 REMARK 3 7 2.8719 - 2.7285 0.98 2725 132 0.1405 0.2082 REMARK 3 8 2.7285 - 2.6100 0.98 2652 156 0.1407 0.2013 REMARK 3 9 2.6100 - 2.5097 0.99 2696 166 0.1407 0.1894 REMARK 3 10 2.5097 - 2.4233 0.98 2683 160 0.1507 0.2296 REMARK 3 11 2.4233 - 2.3477 0.98 2677 151 0.1423 0.2142 REMARK 3 12 2.3477 - 2.2807 0.99 2615 147 0.1472 0.1784 REMARK 3 13 2.2807 - 2.2207 0.98 2628 169 0.1399 0.2272 REMARK 3 14 2.2207 - 2.1666 0.98 2706 136 0.1417 0.1963 REMARK 3 15 2.1666 - 2.1174 0.97 2717 128 0.1431 0.2204 REMARK 3 16 2.1174 - 2.0724 0.98 2725 158 0.1417 0.2622 REMARK 3 17 2.0724 - 2.0310 0.97 2603 136 0.1416 0.2143 REMARK 3 18 2.0310 - 1.9927 0.98 2662 107 0.1480 0.1975 REMARK 3 19 1.9927 - 1.9571 0.98 2602 145 0.1559 0.2388 REMARK 3 20 1.9571 - 1.9240 0.97 2676 149 0.1584 0.1901 REMARK 3 21 1.9240 - 1.8930 0.98 2765 110 0.1589 0.2453 REMARK 3 22 1.8930 - 1.8639 0.96 2584 160 0.1692 0.2522 REMARK 3 23 1.8639 - 1.8365 0.97 2671 158 0.1839 0.2487 REMARK 3 24 1.8365 - 1.8106 0.98 2628 125 0.1903 0.2872 REMARK 3 25 1.8106 - 1.7862 0.96 2631 154 0.2000 0.2522 REMARK 3 26 1.7862 - 1.7630 0.97 2660 129 0.2017 0.2823 REMARK 3 27 1.7630 - 1.7410 0.98 2649 136 0.2206 0.2784 REMARK 3 28 1.7410 - 1.7200 0.95 2631 139 0.2406 0.2944 REMARK 3 29 1.7200 - 1.7000 0.97 2716 137 0.2482 0.3483 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3272 REMARK 3 ANGLE : 0.920 4491 REMARK 3 CHIRALITY : 0.045 471 REMARK 3 PLANARITY : 0.006 598 REMARK 3 DIHEDRAL : 11.099 1169 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 AND TORODIAL FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 74.957 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2O88 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 10% GLICEROL AND REMARK 280 0.1 M TRIS-HCL , PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.17400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.08700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 59 REMARK 465 GLU A 60 REMARK 465 ASN A 61 REMARK 465 SER A 121 REMARK 465 MET B 59 REMARK 465 GLU B 60 REMARK 465 ASN B 61 REMARK 465 ASP B 62 REMARK 465 PRO B 63 REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 465 MET C 59 REMARK 465 GLU C 60 REMARK 465 ASN C 61 REMARK 465 ASP C 62 REMARK 465 PRO C 63 REMARK 465 ASN C 120 REMARK 465 SER C 121 REMARK 465 MET D 59 REMARK 465 GLU D 60 REMARK 465 ASN D 61 REMARK 465 ASP D 62 REMARK 465 PRO D 63 REMARK 465 SER D 121 REMARK 465 MET E 59 REMARK 465 GLU E 60 REMARK 465 ASN E 61 REMARK 465 SER E 121 REMARK 465 MET F 59 REMARK 465 GLU F 60 REMARK 465 ASN F 61 REMARK 465 ASP F 62 REMARK 465 PRO F 63 REMARK 465 ASN F 120 REMARK 465 SER F 121 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN E 78 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ACE J 0 O - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 ACE K 0 O - C - N ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN G OF P7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN H OF P7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN I OF P7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN J OF P7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN K OF P7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN L OF P7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O88 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N114A MUTANT OF ABL-SH3 DOMAIN COMPLEXED REMARK 900 WITH A DESIGNED HIGH-AFFINITY PEPTIDE LIGAND: IMPLICATIONS FOR SH3- REMARK 900 LIGAND INTERACTIONS REMARK 900 RELATED ID: 3EG0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N114T MUTANT OF ABL-SH3 DOMAIN REMARK 900 RELATED ID: 3EG1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N114Q MUTANT OF ABL-SH3 DOMAIN COMPLEXED REMARK 900 WITH A DESIGNED HIGH-AFFINITY PEPTIDE LIGAND: IMPLICATIONS FOR SH3- REMARK 900 LIGAND INTERACTIONS REMARK 900 RELATED ID: 3EG2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N114Q MUTANT OF ABL-SH3 DOMAIN REMARK 900 RELATED ID: 3EG3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N114A MUTANT OF ABL-SH3 DOMAIN REMARK 900 RELATED ID: 3EGU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N114A MUTANT OF ABL-SH3 DOMAIN REMARK 900 RELATED ID: 4J9F RELATED DB: PDB REMARK 900 RELATED ID: 4J9G RELATED DB: PDB REMARK 900 RELATED ID: 4J9I RELATED DB: PDB DBREF 4J9H A 60 121 UNP P00519 ABL1_HUMAN 60 121 DBREF 4J9H B 60 121 UNP P00519 ABL1_HUMAN 60 121 DBREF 4J9H C 60 121 UNP P00519 ABL1_HUMAN 60 121 DBREF 4J9H D 60 121 UNP P00519 ABL1_HUMAN 60 121 DBREF 4J9H E 60 121 UNP P00519 ABL1_HUMAN 60 121 DBREF 4J9H F 60 121 UNP P00519 ABL1_HUMAN 60 121 DBREF 4J9H G 0 10 PDB 4J9H 4J9H 0 10 DBREF 4J9H H 0 10 PDB 4J9H 4J9H 0 10 DBREF 4J9H I 0 10 PDB 4J9H 4J9H 0 10 DBREF 4J9H J 0 10 PDB 4J9H 4J9H 0 10 DBREF 4J9H K 0 10 PDB 4J9H 4J9H 0 10 DBREF 4J9H L 0 10 PDB 4J9H 4J9H 0 10 SEQADV 4J9H MET A 59 UNP P00519 INITIATING METHIONINE SEQADV 4J9H MET B 59 UNP P00519 INITIATING METHIONINE SEQADV 4J9H MET C 59 UNP P00519 INITIATING METHIONINE SEQADV 4J9H MET D 59 UNP P00519 INITIATING METHIONINE SEQADV 4J9H MET E 59 UNP P00519 INITIATING METHIONINE SEQADV 4J9H MET F 59 UNP P00519 INITIATING METHIONINE SEQRES 1 A 63 MET GLU ASN ASP PRO ASN LEU PHE VAL ALA LEU TYR ASP SEQRES 2 A 63 PHE VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS SEQRES 3 A 63 GLY GLU LYS LEU ARG VAL LEU GLY TYR ASN HIS ASN GLY SEQRES 4 A 63 GLU TRP CYS GLU ALA GLN THR LYS ASN GLY GLN GLY TRP SEQRES 5 A 63 VAL PRO SER ASN TYR ILE THR PRO VAL ASN SER SEQRES 1 B 63 MET GLU ASN ASP PRO ASN LEU PHE VAL ALA LEU TYR ASP SEQRES 2 B 63 PHE VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS SEQRES 3 B 63 GLY GLU LYS LEU ARG VAL LEU GLY TYR ASN HIS ASN GLY SEQRES 4 B 63 GLU TRP CYS GLU ALA GLN THR LYS ASN GLY GLN GLY TRP SEQRES 5 B 63 VAL PRO SER ASN TYR ILE THR PRO VAL ASN SER SEQRES 1 C 63 MET GLU ASN ASP PRO ASN LEU PHE VAL ALA LEU TYR ASP SEQRES 2 C 63 PHE VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS SEQRES 3 C 63 GLY GLU LYS LEU ARG VAL LEU GLY TYR ASN HIS ASN GLY SEQRES 4 C 63 GLU TRP CYS GLU ALA GLN THR LYS ASN GLY GLN GLY TRP SEQRES 5 C 63 VAL PRO SER ASN TYR ILE THR PRO VAL ASN SER SEQRES 1 D 63 MET GLU ASN ASP PRO ASN LEU PHE VAL ALA LEU TYR ASP SEQRES 2 D 63 PHE VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS SEQRES 3 D 63 GLY GLU LYS LEU ARG VAL LEU GLY TYR ASN HIS ASN GLY SEQRES 4 D 63 GLU TRP CYS GLU ALA GLN THR LYS ASN GLY GLN GLY TRP SEQRES 5 D 63 VAL PRO SER ASN TYR ILE THR PRO VAL ASN SER SEQRES 1 E 63 MET GLU ASN ASP PRO ASN LEU PHE VAL ALA LEU TYR ASP SEQRES 2 E 63 PHE VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS SEQRES 3 E 63 GLY GLU LYS LEU ARG VAL LEU GLY TYR ASN HIS ASN GLY SEQRES 4 E 63 GLU TRP CYS GLU ALA GLN THR LYS ASN GLY GLN GLY TRP SEQRES 5 E 63 VAL PRO SER ASN TYR ILE THR PRO VAL ASN SER SEQRES 1 F 63 MET GLU ASN ASP PRO ASN LEU PHE VAL ALA LEU TYR ASP SEQRES 2 F 63 PHE VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS SEQRES 3 F 63 GLY GLU LYS LEU ARG VAL LEU GLY TYR ASN HIS ASN GLY SEQRES 4 F 63 GLU TRP CYS GLU ALA GLN THR LYS ASN GLY GLN GLY TRP SEQRES 5 F 63 VAL PRO SER ASN TYR ILE THR PRO VAL ASN SER SEQRES 1 G 11 ACE ALA PRO THR TYR PRO PRO PRO PRO PRO PRO SEQRES 1 H 11 ACE ALA PRO THR TYR PRO PRO PRO PRO PRO PRO SEQRES 1 I 11 ACE ALA PRO THR TYR PRO PRO PRO PRO PRO PRO SEQRES 1 J 11 ACE ALA PRO THR TYR PRO PRO PRO PRO PRO PRO SEQRES 1 K 11 ACE ALA PRO THR TYR PRO PRO PRO PRO PRO PRO SEQRES 1 L 11 ACE ALA PRO THR TYR PRO PRO PRO PRO PRO PRO HET ACE G 0 3 HET ACE H 0 3 HET ACE I 0 3 HET ACE J 0 3 HET ACE K 0 3 HET ACE L 0 3 HET SO4 E 201 5 HETNAM ACE ACETYL GROUP HETNAM SO4 SULFATE ION FORMUL 7 ACE 6(C2 H4 O) FORMUL 13 SO4 O4 S 2- FORMUL 14 HOH *384(H2 O) SHEET 1 A 5 GLY A 107 PRO A 112 0 SHEET 2 A 5 TRP A 99 THR A 104 -1 N CYS A 100 O VAL A 111 SHEET 3 A 5 LYS A 87 TYR A 93 -1 N LEU A 91 O GLU A 101 SHEET 4 A 5 LEU A 65 ALA A 68 -1 N PHE A 66 O LEU A 88 SHEET 5 A 5 ILE A 116 PRO A 118 -1 O THR A 117 N VAL A 67 SHEET 1 B 5 GLY B 107 PRO B 112 0 SHEET 2 B 5 TRP B 99 THR B 104 -1 N CYS B 100 O VAL B 111 SHEET 3 B 5 LYS B 87 TYR B 93 -1 N LEU B 91 O GLU B 101 SHEET 4 B 5 LEU B 65 ALA B 68 -1 N PHE B 66 O LEU B 88 SHEET 5 B 5 ILE B 116 PRO B 118 -1 O THR B 117 N VAL B 67 SHEET 1 C 5 GLY C 107 PRO C 112 0 SHEET 2 C 5 TRP C 99 THR C 104 -1 N CYS C 100 O VAL C 111 SHEET 3 C 5 LYS C 87 TYR C 93 -1 N LEU C 91 O GLU C 101 SHEET 4 C 5 LEU C 65 ALA C 68 -1 N PHE C 66 O LEU C 88 SHEET 5 C 5 ILE C 116 PRO C 118 -1 O THR C 117 N VAL C 67 SHEET 1 D 5 GLY D 107 PRO D 112 0 SHEET 2 D 5 TRP D 99 THR D 104 -1 N CYS D 100 O VAL D 111 SHEET 3 D 5 LYS D 87 TYR D 93 -1 N ARG D 89 O GLN D 103 SHEET 4 D 5 LEU D 65 ALA D 68 -1 N PHE D 66 O LEU D 88 SHEET 5 D 5 ILE D 116 ASN D 120 -1 O VAL D 119 N LEU D 65 SHEET 1 E 6 GLY E 107 PRO E 112 0 SHEET 2 E 6 TRP E 99 THR E 104 -1 N CYS E 100 O VAL E 111 SHEET 3 E 6 LYS E 87 ASN E 94 -1 N LEU E 91 O GLU E 101 SHEET 4 E 6 LYS F 87 TYR F 93 -1 O TYR F 93 N TYR E 93 SHEET 5 E 6 TRP F 99 THR F 104 -1 O GLU F 101 N LEU F 91 SHEET 6 E 6 GLY F 107 PRO F 112 -1 O VAL F 111 N CYS F 100 SHEET 1 F 6 ILE E 116 PRO E 118 0 SHEET 2 F 6 LEU E 65 ALA E 68 -1 N VAL E 67 O THR E 117 SHEET 3 F 6 LYS E 87 ASN E 94 -1 O LEU E 88 N PHE E 66 SHEET 4 F 6 LYS F 87 TYR F 93 -1 O TYR F 93 N TYR E 93 SHEET 5 F 6 LEU F 65 ALA F 68 -1 N PHE F 66 O LEU F 88 SHEET 6 F 6 ILE F 116 PRO F 118 -1 O THR F 117 N VAL F 67 LINK C ACE G 0 N ALA G 1 1555 1555 1.33 LINK C ACE H 0 N ALA H 1 1555 1555 1.33 LINK C ACE I 0 N ALA I 1 1555 1555 1.33 LINK C ACE J 0 N ALA J 1 1555 1555 1.33 LINK C ACE K 0 N ALA K 1 1555 1555 1.33 LINK C ACE L 0 N ALA L 1 1555 1555 1.33 CISPEP 1 ASP A 62 PRO A 63 0 0.05 CISPEP 2 PRO G 9 PRO G 10 0 -4.05 SITE 1 AC1 5 HOH A 243 GLU E 86 LYS E 87 LYS E 105 SITE 2 AC1 5 HOH E 338 SITE 1 AC2 26 TYR A 70 SER A 75 ASP A 77 THR A 79 SITE 2 AC2 26 ASN A 94 GLU A 98 TRP A 99 ASN A 106 SITE 3 AC2 26 TRP A 110 ASN A 114 TYR A 115 HOH A 221 SITE 4 AC2 26 HOH A 241 HOH A 263 LYS B 84 HOH B 229 SITE 5 AC2 26 PRO D 118 HOH G 102 HOH G 103 HOH G 104 SITE 6 AC2 26 HOH G 105 HOH G 106 HOH G 108 HOH G 109 SITE 7 AC2 26 HOH G 110 PRO H 10 SITE 1 AC3 27 TYR A 70 HOH A 219 TYR B 70 SER B 75 SITE 2 AC3 27 ASN B 78 THR B 79 ASN B 94 GLU B 98 SITE 3 AC3 27 TRP B 99 LYS B 105 TRP B 110 ASN B 114 SITE 4 AC3 27 TYR B 115 HOH B 213 HOH B 220 PRO G 10 SITE 5 AC3 27 HOH H 101 HOH H 102 HOH H 103 HOH H 104 SITE 6 AC3 27 HOH H 105 HOH H 107 HOH H 112 HOH H 113 SITE 7 AC3 27 HOH H 116 HOH H 117 HOH H 118 SITE 1 AC4 24 HOH E 301 HOH E 316 TYR F 70 SER F 75 SITE 2 AC4 24 ASN F 78 THR F 79 ASN F 94 GLU F 98 SITE 3 AC4 24 TRP F 99 LYS F 105 ASN F 106 TRP F 110 SITE 4 AC4 24 TYR F 115 HOH F 203 HOH F 207 HOH F 251 SITE 5 AC4 24 HOH I 101 HOH I 102 HOH I 103 HOH I 104 SITE 6 AC4 24 HOH I 106 HOH I 108 HOH I 109 HOH I 110 SITE 1 AC5 26 THR C 117 PRO C 118 HOH C 220 SER E 75 SITE 2 AC5 26 ASP E 77 THR E 79 ASN E 94 GLU E 98 SITE 3 AC5 26 TRP E 99 ASN E 106 TRP E 110 ASN E 114 SITE 4 AC5 26 TYR E 115 HOH E 302 HOH E 315 HOH E 324 SITE 5 AC5 26 HOH E 335 HOH E 355 TYR F 70 LYS F 84 SITE 6 AC5 26 HOH J 101 HOH J 103 HOH J 104 HOH J 105 SITE 7 AC5 26 HOH J 107 HOH J 109 SITE 1 AC6 20 TYR D 70 SER D 75 ASP D 77 ASN D 78 SITE 2 AC6 20 THR D 79 ASN D 94 GLU D 98 TRP D 99 SITE 3 AC6 20 ASN D 106 TRP D 110 ASN D 114 TYR D 115 SITE 4 AC6 20 HOH D 207 HOH D 254 HOH K 101 HOH K 102 SITE 5 AC6 20 HOH K 103 HOH K 104 HOH K 106 HOH K 109 SITE 1 AC7 20 TYR C 70 SER C 75 GLY C 76 ASP C 77 SITE 2 AC7 20 ASN C 78 THR C 79 ASN C 94 GLU C 98 SITE 3 AC7 20 TRP C 99 LYS C 105 ASN C 106 TRP C 110 SITE 4 AC7 20 ASN C 114 TYR C 115 HOH C 205 HOH C 216 SITE 5 AC7 20 HOH D 232 HOH L 101 HOH L 102 HOH L 103 CRYST1 86.553 86.553 45.261 90.00 90.00 120.00 P 32 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011554 0.006670 0.000000 0.00000 SCALE2 0.000000 0.013341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022094 0.00000