HEADER    TRANSFERASE/DNA                         16-FEB-13   4J9M              
TITLE     HUMAN DNA POLYMERASE ETA-DNA TERNARY COMPLEX: MISINCORPORATION G      
TITLE    2 OPPOSITE T AFTER AN A AT THE PRIMER 3' END (AA/G)                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE ETA;                                        
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: CATALYTIC CORE DOMAIN, UNP RESIDUES 1-432;                 
COMPND   5 SYNONYM: RAD30 HOMOLOG A, XERODERMA PIGMENTOSUM VARIANT TYPE PROTEIN;
COMPND   6 EC: 2.7.7.7;                                                         
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: DNA;                                                       
COMPND  10 CHAIN: T;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: DNA;                                                       
COMPND  14 CHAIN: P;                                                            
COMPND  15 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLH, RAD30, RAD30A, XPV;                                      
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS;                           
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET28;                                    
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 MOL_ID: 3;                                                           
SOURCE  14 SYNTHETIC: YES                                                       
KEYWDS    IMMUNOGLOBULIN, A TO G TRANSITION, MISINCORPORATION, WOBBLE BASE      
KEYWDS   2 PAIR, DNA POLYMERASE, TRANSFERASE-DNA COMPLEX                        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.ZHAO,M.GREGORY,C.BIERTUMPFEL,Y.HUA,F.HANAOKA,W.YANG                 
REVDAT   3   20-SEP-23 4J9M    1       REMARK SEQADV LINK                       
REVDAT   2   28-AUG-13 4J9M    1       JRNL                                     
REVDAT   1   01-MAY-13 4J9M    0                                                
JRNL        AUTH   Y.ZHAO,M.T.GREGORY,C.BIERTUMPFEL,Y.J.HUA,F.HANAOKA,W.YANG    
JRNL        TITL   MECHANISM OF SOMATIC HYPERMUTATION AT THE WA MOTIF BY HUMAN  
JRNL        TITL 2 DNA POLYMERASE ETA.                                          
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 110  8146 2013              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   23630267                                                     
JRNL        DOI    10.1073/PNAS.1303126110                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.25 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.8.1_1168                                    
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 29.55                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.350                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 21434                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.183                           
REMARK   3   R VALUE            (WORKING SET) : 0.180                           
REMARK   3   FREE R VALUE                     : 0.223                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 7.680                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1646                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 29.5524 -  5.1430    0.99     1663   146  0.1871 0.2208        
REMARK   3     2  5.1430 -  4.0856    1.00     1677   122  0.1523 0.1514        
REMARK   3     3  4.0856 -  3.5702    1.00     1645   142  0.1457 0.1873        
REMARK   3     4  3.5702 -  3.2442    1.00     1666   135  0.1546 0.1881        
REMARK   3     5  3.2442 -  3.0119    1.00     1658   128  0.1811 0.2050        
REMARK   3     6  3.0119 -  2.8345    1.00     1654   137  0.1962 0.2393        
REMARK   3     7  2.8345 -  2.6926    1.00     1657   133  0.2010 0.2549        
REMARK   3     8  2.6926 -  2.5755    1.00     1628   136  0.2079 0.3063        
REMARK   3     9  2.5755 -  2.4764    1.00     1637   150  0.2181 0.2863        
REMARK   3    10  2.4764 -  2.3910    1.00     1603   170  0.2311 0.2804        
REMARK   3    11  2.3910 -  2.3162    1.00     1678   123  0.2122 0.3078        
REMARK   3    12  2.3162 -  2.2501    1.00     1622   124  0.2161 0.3040        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.270            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.330           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 25.76                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 24.48                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.005           4011                                  
REMARK   3   ANGLE     :  0.917           5510                                  
REMARK   3   CHIRALITY :  0.062            618                                  
REMARK   3   PLANARITY :  0.006            640                                  
REMARK   3   DIHEDRAL  : 21.139           1570                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4J9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-13.                  
REMARK 100 THE DEPOSITION ID IS D_1000077769.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 05-JAN-10                          
REMARK 200  TEMPERATURE           (KELVIN) : 95                                 
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 22-BM                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XDS                                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 21434                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.250                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 30.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 2.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 4.400                              
REMARK 200  R MERGE                    (I) : 0.09800                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 14.5000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.31                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.42                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.67800                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.040                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 3MR2                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 41.03                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2K-MME, KCL, MES, PH 6.5, VAPOR       
REMARK 280  DIFFUSION, HANGING DROP, TEMPERATURE 298K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+5/6                                            
REMARK 290       6555   X-Y,X,Z+1/6                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       27.33667            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       54.67333            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       41.00500            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       68.34167            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       13.66833            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 22090 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     PRO A   154                                                      
REMARK 465     THR A   155                                                      
REMARK 465     THR A   156                                                      
REMARK 465     ALA A   157                                                      
REMARK 465     GLU A   158                                                      
REMARK 465     GLU A   159                                                      
REMARK 465      DT T     1                                                      
REMARK 465      DA T     2                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470      DT P   1    O5'  C5'  C4'  O4'  C3'  C2'  C1'                   
REMARK 470      DT P   1    N1   C2   O2   N3   C4   O4   C5                    
REMARK 470      DT P   1    C7   C6                                             
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A  39     -177.52     66.71                                   
REMARK 500    TYR A  39     -178.05     66.71                                   
REMARK 500    LYS A  40      -26.02   -154.39                                   
REMARK 500    LYS A  40      -25.58   -153.88                                   
REMARK 500    ASP A 181       16.56     95.68                                   
REMARK 500    SER A 217     -160.99   -160.17                                   
REMARK 500    SER A 257       -6.90     84.85                                   
REMARK 500    GLU A 273      -32.29   -133.46                                   
REMARK 500    ASN A 407      104.73    -59.37                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 501  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  13   OD1                                                    
REMARK 620 2 MET A  14   O    83.4                                              
REMARK 620 3 ASP A 115   OD2  91.8  93.3                                        
REMARK 620 4 XG4 A 504   O1B 168.1  96.3 100.1                                  
REMARK 620 5 XG4 A 504   O1G  80.6  92.9 169.5  87.6                            
REMARK 620 6 XG4 A 504   O1A  99.8 173.1  92.7  79.4  81.6                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 502  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  13   OD2                                                    
REMARK 620 2 ASP A 115   OD1  95.8                                              
REMARK 620 3 GLU A 116   OE2  82.2  92.3                                        
REMARK 620 4 XG4 A 504   O1A 108.9  93.5 166.9                                  
REMARK 620 5 HOH A 609   O   152.4  88.1  70.3  98.1                            
REMARK 620 6 HOH A 710   O    92.6 171.2  91.5  81.3  85.6                      
REMARK 620 7  DA P   9   O3' 154.1  79.2  72.6  96.9   9.1  94.3                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 503  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 PRO A  27   O                                                      
REMARK 620 2 HIS A  28   O    77.7                                              
REMARK 620 3 ARG A  30   O    94.9  89.5                                        
REMARK 620 N                    1     2                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 503                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XG4 A 504                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3MR2   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4DL2   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4DL3   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4J9K   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4J9L   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4J9N   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4J9O   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4J9P   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4J9Q   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4J9R   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4J9S   RELATED DB: PDB                                   
DBREF  4J9M A    1   432  UNP    Q9Y253   POLH_HUMAN       1    432             
DBREF  4J9M T    1    12  PDB    4J9M     4J9M             1     12             
DBREF  4J9M P    1     9  PDB    4J9M     4J9M             1      9             
SEQADV 4J9M GLY A   -2  UNP  Q9Y253              EXPRESSION TAG                 
SEQADV 4J9M PRO A   -1  UNP  Q9Y253              EXPRESSION TAG                 
SEQADV 4J9M HIS A    0  UNP  Q9Y253              EXPRESSION TAG                 
SEQRES   1 A  435  GLY PRO HIS MET ALA THR GLY GLN ASP ARG VAL VAL ALA          
SEQRES   2 A  435  LEU VAL ASP MET ASP CYS PHE PHE VAL GLN VAL GLU GLN          
SEQRES   3 A  435  ARG GLN ASN PRO HIS LEU ARG ASN LYS PRO CYS ALA VAL          
SEQRES   4 A  435  VAL GLN TYR LYS SER TRP LYS GLY GLY GLY ILE ILE ALA          
SEQRES   5 A  435  VAL SER TYR GLU ALA ARG ALA PHE GLY VAL THR ARG SER          
SEQRES   6 A  435  MET TRP ALA ASP ASP ALA LYS LYS LEU CYS PRO ASP LEU          
SEQRES   7 A  435  LEU LEU ALA GLN VAL ARG GLU SER ARG GLY LYS ALA ASN          
SEQRES   8 A  435  LEU THR LYS TYR ARG GLU ALA SER VAL GLU VAL MET GLU          
SEQRES   9 A  435  ILE MET SER ARG PHE ALA VAL ILE GLU ARG ALA SER ILE          
SEQRES  10 A  435  ASP GLU ALA TYR VAL ASP LEU THR SER ALA VAL GLN GLU          
SEQRES  11 A  435  ARG LEU GLN LYS LEU GLN GLY GLN PRO ILE SER ALA ASP          
SEQRES  12 A  435  LEU LEU PRO SER THR TYR ILE GLU GLY LEU PRO GLN GLY          
SEQRES  13 A  435  PRO THR THR ALA GLU GLU THR VAL GLN LYS GLU GLY MET          
SEQRES  14 A  435  ARG LYS GLN GLY LEU PHE GLN TRP LEU ASP SER LEU GLN          
SEQRES  15 A  435  ILE ASP ASN LEU THR SER PRO ASP LEU GLN LEU THR VAL          
SEQRES  16 A  435  GLY ALA VAL ILE VAL GLU GLU MET ARG ALA ALA ILE GLU          
SEQRES  17 A  435  ARG GLU THR GLY PHE GLN CYS SER ALA GLY ILE SER HIS          
SEQRES  18 A  435  ASN LYS VAL LEU ALA LYS LEU ALA CYS GLY LEU ASN LYS          
SEQRES  19 A  435  PRO ASN ARG GLN THR LEU VAL SER HIS GLY SER VAL PRO          
SEQRES  20 A  435  GLN LEU PHE SER GLN MET PRO ILE ARG LYS ILE ARG SER          
SEQRES  21 A  435  LEU GLY GLY LYS LEU GLY ALA SER VAL ILE GLU ILE LEU          
SEQRES  22 A  435  GLY ILE GLU TYR MET GLY GLU LEU THR GLN PHE THR GLU          
SEQRES  23 A  435  SER GLN LEU GLN SER HIS PHE GLY GLU LYS ASN GLY SER          
SEQRES  24 A  435  TRP LEU TYR ALA MET CYS ARG GLY ILE GLU HIS ASP PRO          
SEQRES  25 A  435  VAL LYS PRO ARG GLN LEU PRO LYS THR ILE GLY CYS SER          
SEQRES  26 A  435  LYS ASN PHE PRO GLY LYS THR ALA LEU ALA THR ARG GLU          
SEQRES  27 A  435  GLN VAL GLN TRP TRP LEU LEU GLN LEU ALA GLN GLU LEU          
SEQRES  28 A  435  GLU GLU ARG LEU THR LYS ASP ARG ASN ASP ASN ASP ARG          
SEQRES  29 A  435  VAL ALA THR GLN LEU VAL VAL SER ILE ARG VAL GLN GLY          
SEQRES  30 A  435  ASP LYS ARG LEU SER SER LEU ARG ARG CYS CYS ALA LEU          
SEQRES  31 A  435  THR ARG TYR ASP ALA HIS LYS MET SER HIS ASP ALA PHE          
SEQRES  32 A  435  THR VAL ILE LYS ASN CYS ASN THR SER GLY ILE GLN THR          
SEQRES  33 A  435  GLU TRP SER PRO PRO LEU THR MET LEU PHE LEU CYS ALA          
SEQRES  34 A  435  THR LYS PHE SER ALA SER                                      
SEQRES   1 T   12   DT  DA  DC  DT  DT  DA  DT  DG  DA  DC  DG  DT              
SEQRES   1 P    9   DT  DA  DC  DG  DT  DC  DA  DT  DA                          
HET     MG  A 501       1                                                       
HET     MG  A 502       1                                                       
HET     NA  A 503       1                                                       
HET    XG4  A 504      31                                                       
HET    GOL  A 505       6                                                       
HET    GOL  A 506       6                                                       
HETNAM      MG MAGNESIUM ION                                                    
HETNAM      NA SODIUM ION                                                       
HETNAM     XG4 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)            
HETNAM   2 XG4  PHOSPHORYL]AMINO}PHOSPHORYL]GUANOSINE                           
HETNAM     GOL GLYCEROL                                                         
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   4   MG    2(MG 2+)                                                     
FORMUL   6   NA    NA 1+                                                        
FORMUL   7  XG4    C10 H17 N6 O12 P3                                            
FORMUL   8  GOL    2(C3 H8 O3)                                                  
FORMUL  10  HOH   *188(H2 O)                                                    
HELIX    1   1 CYS A   16  ASN A   26  1                                  11    
HELIX    2   2 PRO A   27  ARG A   30  5                                   4    
HELIX    3   3 SER A   51  ALA A   56  1                                   6    
HELIX    4   4 TRP A   64  CYS A   72  1                                   9    
HELIX    5   5 LEU A   89  ALA A  107  1                                  19    
HELIX    6   6 LEU A  121  LEU A  132  1                                  12    
HELIX    7   7 SER A  138  LEU A  142  5                                   5    
HELIX    8   8 GLN A  162  ILE A  180  1                                  19    
HELIX    9   9 THR A  184  GLY A  209  1                                  26    
HELIX   10  10 ASN A  219  ASN A  230  1                                  12    
HELIX   11  11 SER A  242  GLN A  249  1                                   8    
HELIX   12  12 MET A  250  ILE A  255  5                                   6    
HELIX   13  13 GLY A  260  GLY A  271  1                                  12    
HELIX   14  14 TYR A  274  PHE A  281  5                                   8    
HELIX   15  15 THR A  282  GLY A  291  1                                  10    
HELIX   16  16 GLY A  291  CYS A  302  1                                  12    
HELIX   17  17 PRO A  326  ALA A  330  5                                   5    
HELIX   18  18 ARG A  334  ASP A  360  1                                  27    
HELIX   19  19 ASP A  391  LYS A  404  1                                  14    
HELIX   20  20 ASN A  405  ASN A  407  5                                   3    
SHEET    1   A 6 ILE A 109  SER A 113  0                                        
SHEET    2   A 6 GLU A 116  ASP A 120 -1  O  TYR A 118   N  GLU A 110           
SHEET    3   A 6 VAL A   9  MET A  14 -1  N  ALA A  10   O  VAL A 119           
SHEET    4   A 6 CYS A 212  SER A 217 -1  O  SER A 217   N  VAL A   9           
SHEET    5   A 6 GLN A 235  LEU A 237  1  O  THR A 236   N  ILE A 216           
SHEET    6   A 6 THR A 145  ILE A 147  1  N  TYR A 146   O  LEU A 237           
SHEET    1   B 3 GLY A  46  VAL A  50  0                                        
SHEET    2   B 3 CYS A  34  GLN A  38 -1  N  VAL A  36   O  ILE A  48           
SHEET    3   B 3 LEU A  76  GLN A  79  1  O  ALA A  78   N  VAL A  37           
SHEET    1   C 2 ARG A  81  SER A  83  0                                        
SHEET    2   C 2 LYS A  86  ASN A  88 -1  O  ASN A  88   N  ARG A  81           
SHEET    1   D 3 ILE A 319  ASN A 324  0                                        
SHEET    2   D 3 GLU A 414  ALA A 431 -1  O  ALA A 426   N  ILE A 319           
SHEET    3   D 3 LEU A 331  THR A 333 -1  N  ALA A 332   O  TRP A 415           
SHEET    1   E 4 ILE A 319  ASN A 324  0                                        
SHEET    2   E 4 GLU A 414  ALA A 431 -1  O  ALA A 426   N  ILE A 319           
SHEET    3   E 4 ARG A 361  VAL A 372 -1  N  VAL A 367   O  CYS A 425           
SHEET    4   E 4 LEU A 381  ALA A 386 -1  O  ARG A 383   N  VAL A 368           
LINK         OD1 ASP A  13                MG    MG A 501     1555   1555  2.18  
LINK         OD2 ASP A  13                MG    MG A 502     1555   1555  2.14  
LINK         O   MET A  14                MG    MG A 501     1555   1555  2.05  
LINK         O   PRO A  27                NA    NA A 503     1555   1555  2.89  
LINK         O   HIS A  28                NA    NA A 503     1555   1555  3.10  
LINK         O   ARG A  30                NA    NA A 503     1555   1555  3.06  
LINK         OD2 ASP A 115                MG    MG A 501     1555   1555  2.07  
LINK         OD1 ASP A 115                MG    MG A 502     1555   1555  2.02  
LINK         OE2 GLU A 116                MG    MG A 502     1555   1555  2.18  
LINK        MG    MG A 501                 O1B XG4 A 504     1555   1555  2.05  
LINK        MG    MG A 501                 O1G XG4 A 504     1555   1555  2.10  
LINK        MG    MG A 501                 O1A XG4 A 504     1555   1555  2.23  
LINK        MG    MG A 502                 O1A XG4 A 504     1555   1555  2.32  
LINK        MG    MG A 502                 O  AHOH A 609     1555   1555  2.34  
LINK        MG    MG A 502                 O  AHOH A 710     1555   1555  2.32  
LINK        MG    MG A 502                 O3'B DA P   9     1555   1555  2.77  
CISPEP   1 LEU A  150    PRO A  151          0        -0.80                     
CISPEP   2 LYS A  231    PRO A  232          0         1.09                     
CISPEP   3 SER A  416    PRO A  417          0        -5.18                     
SITE     1 AC1  5 ASP A  13  MET A  14  ASP A 115   MG A 502                    
SITE     2 AC1  5 XG4 A 504                                                     
SITE     1 AC2  8 ASP A  13  ASP A 115  GLU A 116   MG A 501                    
SITE     2 AC2  8 XG4 A 504  HOH A 609  HOH A 710   DA P   9                    
SITE     1 AC3  3 PRO A  27  HIS A  28  ARG A  30                               
SITE     1 AC4 25 ASP A  13  MET A  14  ASP A  15  CYS A  16                    
SITE     2 AC4 25 PHE A  17  PHE A  18  GLN A  38  ILE A  48                    
SITE     3 AC4 25 ALA A  49  TYR A  52  ARG A  55  ARG A  61                    
SITE     4 AC4 25 ASP A 115  LYS A 231   MG A 501   MG A 502                    
SITE     5 AC4 25 HOH A 606  HOH A 607  HOH A 609  HOH A 625                    
SITE     6 AC4 25 HOH A 667  HOH A 710   DA P   9   DT T   4                    
SITE     7 AC4 25  DT T   5                                                     
SITE     1 AC5  8 GLN A  25  PRO A 244  SER A 248  GLY A 276                    
SITE     2 AC5  8 GLU A 277  HOH A 613  HOH A 636  HOH A 736                    
SITE     1 AC6  6 ARG A  93  VAL A  97  ARG A 111  PRO A 316                    
SITE     2 AC6  6 HOH A 664  HOH A 728                                          
CRYST1   98.430   98.430   82.010  90.00  90.00 120.00 P 61          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010160  0.005866  0.000000        0.00000                         
SCALE2      0.000000  0.011731  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.012194        0.00000