HEADER OXIDOREDUCTASE/PEPTIDE 18-FEB-13 4JAA TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH CONSENSUS ANKYRIN REPEAT TITLE 2 DOMAIN-(D)LEU PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1, FIH-1, HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CONSENSUS ANKYRIN REPEAT DOMAIN-(D)LEU; COMPND 10 CHAIN: S; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE. KEYWDS NON-HEME, 2-OXOGLUTARATE, DIOXYGENASE, OXYGENASE, DNA-BINDING, METAL- KEYWDS 2 BINDING, TRANSCRIPTION, HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, KEYWDS 3 ASPARAGINYL, ASPARTYL HYDROXYLASE, EPIGENETIC REGULATION, SIGNALING, KEYWDS 4 ARD, BETA-HYDROXYLATION, ACTIVATOR/INHIBITOR, OXIDOREDUCTASE-PEPTIDE KEYWDS 5 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.S.SCOTTI,W.GE,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 2 08-NOV-23 4JAA 1 REMARK LINK REVDAT 1 19-FEB-14 4JAA 0 JRNL AUTH J.S.SCOTTI,W.GE,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURE OF AN OXYGENASE IN COMPLEX WITH SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 22451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.250 REMARK 3 FREE R VALUE TEST SET COUNT : 3688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8076 - 7.0582 0.98 1423 143 0.1781 0.1983 REMARK 3 2 7.0582 - 5.6106 0.93 1371 134 0.1869 0.2023 REMARK 3 3 5.6106 - 4.9038 0.97 1410 139 0.1593 0.2360 REMARK 3 4 4.9038 - 4.4566 0.98 1420 147 0.1320 0.1728 REMARK 3 5 4.4566 - 4.1377 0.99 1438 152 0.1361 0.1648 REMARK 3 6 4.1377 - 3.8942 0.99 1430 152 0.1431 0.1966 REMARK 3 7 3.8942 - 3.6994 0.98 1429 141 0.1592 0.1860 REMARK 3 8 3.6994 - 3.5385 0.83 1218 125 0.1562 0.1959 REMARK 3 9 3.5385 - 3.4024 0.85 1226 126 0.1758 0.1933 REMARK 3 10 3.4024 - 3.2851 0.96 1411 143 0.1821 0.2152 REMARK 3 11 3.2851 - 3.1825 0.98 1422 147 0.1926 0.2269 REMARK 3 12 3.1825 - 3.0916 0.99 1441 148 0.1855 0.2404 REMARK 3 13 3.0916 - 3.0102 0.99 1455 146 0.2040 0.2205 REMARK 3 14 3.0102 - 2.9368 0.98 1431 144 0.2070 0.2478 REMARK 3 15 2.9368 - 2.8701 0.99 1440 147 0.2125 0.2331 REMARK 3 16 2.8701 - 2.8091 0.98 1435 145 0.2132 0.2723 REMARK 3 17 2.8091 - 2.7529 0.99 1432 146 0.2189 0.2472 REMARK 3 18 2.7529 - 2.7010 0.99 1431 147 0.2290 0.3047 REMARK 3 19 2.7010 - 2.6528 0.99 1453 150 0.2354 0.2861 REMARK 3 20 2.6528 - 2.6078 0.99 1435 142 0.2520 0.2585 REMARK 3 21 2.6078 - 2.5658 0.99 1455 151 0.2463 0.2807 REMARK 3 22 2.5658 - 2.5263 0.99 1426 148 0.2528 0.2775 REMARK 3 23 2.5263 - 2.4891 0.95 1391 144 0.2905 0.3582 REMARK 3 24 2.4891 - 2.4541 0.87 1260 126 0.2905 0.2873 REMARK 3 25 2.4541 - 2.4209 0.82 1211 126 0.2912 0.2969 REMARK 3 26 2.4209 - 2.3895 0.90 1286 129 0.2941 0.3157 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2872 REMARK 3 ANGLE : 1.142 3917 REMARK 3 CHIRALITY : 0.068 404 REMARK 3 PLANARITY : 0.005 517 REMARK 3 DIHEDRAL : 15.904 1041 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 22:95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0088 16.3239 -17.3659 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.4135 REMARK 3 T33: 0.3369 T12: 0.0324 REMARK 3 T13: -0.0284 T23: -0.1844 REMARK 3 L TENSOR REMARK 3 L11: 3.3553 L22: 1.7150 REMARK 3 L33: 1.8714 L12: -0.2112 REMARK 3 L13: -1.5490 L23: 0.1703 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: 0.2009 S13: -0.3586 REMARK 3 S21: -0.0610 S22: -0.0388 S23: -0.0701 REMARK 3 S31: 0.2434 S32: 0.0180 S33: 0.0676 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 96:149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7171 13.3805 4.3056 REMARK 3 T TENSOR REMARK 3 T11: 0.4939 T22: 0.6838 REMARK 3 T33: 0.4520 T12: 0.1421 REMARK 3 T13: -0.0147 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 3.4451 L22: 3.4671 REMARK 3 L33: 2.8033 L12: -1.2261 REMARK 3 L13: 0.5285 L23: 0.1826 REMARK 3 S TENSOR REMARK 3 S11: -0.4208 S12: -1.0223 S13: -0.3485 REMARK 3 S21: 0.9645 S22: 0.2196 S23: 0.1038 REMARK 3 S31: 0.1419 S32: 0.2011 S33: 0.1939 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 150:297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2377 21.7177 -10.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.3651 REMARK 3 T33: 0.2877 T12: 0.0233 REMARK 3 T13: -0.0392 T23: -0.1208 REMARK 3 L TENSOR REMARK 3 L11: 3.6540 L22: 0.7474 REMARK 3 L33: 2.4073 L12: -0.5629 REMARK 3 L13: -1.4746 L23: 0.2887 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: 0.0126 S13: -0.2424 REMARK 3 S21: 0.1344 S22: -0.0087 S23: -0.0305 REMARK 3 S31: 0.0481 S32: 0.0965 S33: -0.0660 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 298:349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.3730 39.4848 -2.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.2717 T22: 0.2611 REMARK 3 T33: 0.2588 T12: 0.0283 REMARK 3 T13: 0.0345 T23: -0.0728 REMARK 3 L TENSOR REMARK 3 L11: 4.8635 L22: 2.6641 REMARK 3 L33: 1.6600 L12: -0.8884 REMARK 3 L13: -1.8257 L23: 0.5715 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: -0.0291 S13: 0.1696 REMARK 3 S21: 0.0021 S22: 0.0824 S23: -0.1744 REMARK 3 S31: 0.1364 S32: 0.0584 S33: -0.0648 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN S AND (RESID 791:796 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8238 46.7580 -6.7161 REMARK 3 T TENSOR REMARK 3 T11: 0.5236 T22: 0.4535 REMARK 3 T33: 0.4803 T12: -0.0344 REMARK 3 T13: -0.0106 T23: -0.1052 REMARK 3 L TENSOR REMARK 3 L11: 4.1153 L22: 6.5838 REMARK 3 L33: 6.1130 L12: 2.3519 REMARK 3 L13: -0.3081 L23: -2.5204 REMARK 3 S TENSOR REMARK 3 S11: -0.8325 S12: -0.4378 S13: 1.1435 REMARK 3 S21: 0.4866 S22: 0.0042 S23: -0.4565 REMARK 3 S31: -1.2190 S32: -0.3630 S33: 0.7789 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN S AND (RESID 797:806 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0956 32.5602 -3.3578 REMARK 3 T TENSOR REMARK 3 T11: 0.4745 T22: 0.5005 REMARK 3 T33: 0.5178 T12: -0.0815 REMARK 3 T13: 0.0331 T23: -0.2327 REMARK 3 L TENSOR REMARK 3 L11: 9.5077 L22: 4.3465 REMARK 3 L33: 3.1578 L12: -6.3847 REMARK 3 L13: -2.1124 L23: 1.8615 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.6922 S13: 0.6326 REMARK 3 S21: 1.0245 S22: -0.5084 S23: -0.6571 REMARK 3 S31: -0.5987 S32: -0.3998 S33: 0.3752 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91730 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 0.1.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22451 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 33.804 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.51450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.03950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.03950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.75725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.03950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.03950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.27175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.03950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.03950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.75725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.03950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.03950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.27175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.51450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 ALA A 20 REMARK 465 GLY A 21 REMARK 465 HIS S 788 REMARK 465 LEU S 789 REMARK 465 GLU S 790 REMARK 465 LYS S 807 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 23 CG CD1 CD2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ASN A 87 CG OD1 ND2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLN A 112 CG CD OE1 NE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 LYS S 793 CG CD CE NZ REMARK 470 GLN S 805 CG CD OE1 NE2 REMARK 470 ASP S 806 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 44 O HOH A 713 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 347 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 38.85 -141.96 REMARK 500 PHE A 100 73.61 -101.14 REMARK 500 GLU A 202 32.92 -96.04 REMARK 500 ILE A 210 -51.81 -124.69 REMARK 500 TYR A 230 155.38 -48.93 REMARK 500 ASP A 237 123.75 -32.84 REMARK 500 ARG A 238 -11.14 92.02 REMARK 500 ASN A 246 75.59 -156.55 REMARK 500 TYR A 276 -17.71 75.03 REMARK 500 ASN A 332 117.49 -168.17 REMARK 500 ALA S 804 -80.65 -50.72 REMARK 500 GLN S 805 -71.85 -100.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 109.9 REMARK 620 3 HIS A 279 NE2 98.6 88.4 REMARK 620 4 OGA A 502 O2' 88.3 158.6 100.2 REMARK 620 5 OGA A 502 O1 160.1 77.3 100.2 81.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN S OF CONSENSUS ANKYRIN REMARK 800 REPEAT DOMAIN-(D)LEU REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H2K RELATED DB: PDB REMARK 900 RELATED ID: 1H2L RELATED DB: PDB REMARK 900 RELATED ID: 1H2M RELATED DB: PDB REMARK 900 RELATED ID: 4B7E RELATED DB: PDB REMARK 900 RELATED ID: 4B7K RELATED DB: PDB DBREF 4JAA A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 DBREF 4JAA S 788 807 PDB 4JAA 4JAA 788 807 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 S 20 HIS LEU GLU VAL VAL LYS LEU LEU LEU GLU HIS GLY ALA SEQRES 2 S 20 ASP VAL DLE ALA GLN ASP LYS HET DLE S 803 8 HET ZN A 501 1 HET OGA A 502 10 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM DLE D-LEUCINE HETNAM ZN ZINC ION HETNAM OGA N-OXALYLGLYCINE HETNAM SO4 SULFATE ION FORMUL 2 DLE C6 H13 N O2 FORMUL 3 ZN ZN 2+ FORMUL 4 OGA C4 H5 N O5 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *120(H2 O) HELIX 1 1 ASP A 28 LEU A 32 5 5 HELIX 2 2 ASP A 49 ASN A 58 1 10 HELIX 3 3 VAL A 70 TRP A 76 5 7 HELIX 4 4 ASP A 77 ILE A 85 1 9 HELIX 5 5 ASP A 104 PHE A 111 5 8 HELIX 6 6 PHE A 125 ARG A 138 1 14 HELIX 7 7 GLY A 155 GLY A 164 1 10 HELIX 8 8 ASN A 166 ARG A 177 1 12 HELIX 9 9 PRO A 220 ASP A 222 5 3 HELIX 10 10 GLN A 223 TYR A 228 1 6 HELIX 11 11 PHE A 252 VAL A 258 5 7 HELIX 12 12 LYS A 311 LEU A 330 1 20 HELIX 13 13 ASN A 332 GLN A 334 5 3 HELIX 14 14 GLU A 335 LYS A 345 1 11 HELIX 15 15 VAL S 792 GLU S 797 1 6 SHEET 1 A 5 THR A 39 PRO A 41 0 SHEET 2 A 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 A 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 A 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 A 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 B 9 ARG A 44 LEU A 45 0 SHEET 2 B 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 B 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 B 9 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273 SHEET 5 B 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 B 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 B 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187 SHEET 8 B 9 ASP A 89 ALA A 95 -1 N SER A 91 O GLN A 147 SHEET 9 B 9 SER A 118 LYS A 124 -1 O ASN A 119 N SER A 94 SHEET 1 C 6 ARG A 44 LEU A 45 0 SHEET 2 C 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 C 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 C 6 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273 SHEET 5 C 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 C 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK C VAL S 802 N DLE S 803 1555 1555 1.34 LINK C DLE S 803 N ALA S 804 1555 1555 1.34 LINK NE2 HIS A 199 ZN ZN A 501 1555 1555 2.10 LINK OD2 ASP A 201 ZN ZN A 501 1555 1555 2.02 LINK NE2 HIS A 279 ZN ZN A 501 1555 1555 2.09 LINK ZN ZN A 501 O2' OGA A 502 1555 1555 2.07 LINK ZN ZN A 501 O1 OGA A 502 1555 1555 2.16 CISPEP 1 TYR A 308 PRO A 309 0 -3.12 SITE 1 AC1 4 HIS A 199 ASP A 201 HIS A 279 OGA A 502 SITE 1 AC2 14 TYR A 145 LEU A 188 THR A 196 HIS A 199 SITE 2 AC2 14 ASP A 201 ASN A 205 PHE A 207 LYS A 214 SITE 3 AC2 14 HIS A 279 ILE A 281 ASN A 294 TRP A 296 SITE 4 AC2 14 ZN A 501 DLE S 803 SITE 1 AC3 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC4 3 LYS A 311 ALA A 312 HOH A 633 SITE 1 AC5 26 TYR A 93 TYR A 102 GLN A 147 THR A 196 SITE 2 AC5 26 HIS A 199 ASP A 201 GLU A 202 GLN A 203 SITE 3 AC5 26 ARG A 238 TYR A 276 TRP A 296 ILE A 306 SITE 4 AC5 26 TYR A 308 GLN A 314 ALA A 317 ILE A 318 SITE 5 AC5 26 ASN A 321 MET A 325 GLU A 328 OGA A 502 SITE 6 AC5 26 HOH A 606 HOH A 617 HOH A 619 HOH A 667 SITE 7 AC5 26 HOH S 901 HOH S 902 CRYST1 86.079 86.079 147.029 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006801 0.00000