HEADER TRANSFERASE/SIGNALING PROTEIN 19-FEB-13 4JAS TITLE STRUCTURAL BASIS OF A RATIONALLY REWIRED PROTEIN-PROTEIN INTERFACE TITLE 2 (HK853MUTANT A268V, A271G, T275M, V294T AND D297E AND RR468MUTANT TITLE 3 V13P, L14I, I17M AND N21V) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HK853 CYTOPLASMIC REGION, UNP RESIDUES 232-489; COMPND 5 SYNONYM: SENSOR HISTIDINE KINASE; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RESPONSE REGULATOR; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: RR468, RESPONSE REGULATOR RECEIVER PROTEIN; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM_0853; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 13 ORGANISM_TAXID: 243274; SOURCE 14 STRAIN: MSB8; SOURCE 15 GENE: TM_0468; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS BERGERAT FOLD, ALPHA/BETA DOMAIN, SIGNAL TRANSDUCTION, KEYWDS 2 AUTOPHOSPHORYLATION, PHOSPHOTRANSFERASE, DEPHOSPHORYLATION, KEYWDS 3 HISTIDINE KINASE, RESPONSE REGULATOR, PHOSPHORYLATION, TRANSFERASE- KEYWDS 4 SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.I.PODGORNAIA,P.CASINO,A.MARINA,M.T.LAUB REVDAT 3 08-NOV-23 4JAS 1 REMARK SEQADV LINK REVDAT 2 25-SEP-13 4JAS 1 AUTHOR JRNL REVDAT 1 04-SEP-13 4JAS 0 JRNL AUTH A.I.PODGORNAIA,P.CASINO,A.MARINA,M.T.LAUB JRNL TITL STRUCTURAL BASIS OF A RATIONALLY REWIRED PROTEIN-PROTEIN JRNL TITL 2 INTERFACE CRITICAL TO BACTERIAL SIGNALING JRNL REF STRUCTURE V. 21 1636 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23954504 JRNL DOI 10.1016/J.STR.2013.07.005 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 12140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : 728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 607 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.12000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 1.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.399 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.302 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.572 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2941 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3981 ; 0.995 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 5.082 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;36.276 ;25.156 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;17.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2140 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4JAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97718 REMARK 200 MONOCHROMATOR : SINGLE SILICON (111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12140 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : 0.38900 REMARK 200 FOR SHELL : 15.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DGE, 3GL9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUM SULFATE, BIS-TRIS, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.85500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.65450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 92.79750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.85500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.65450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.79750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.85500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.65450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.79750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.85500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.65450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.79750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -75.71000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.30900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 232 REMARK 465 GLU A 233 REMARK 465 ASN A 234 REMARK 465 VAL A 235 REMARK 465 THR A 236 REMARK 465 GLU A 237 REMARK 465 SER A 238 REMARK 465 LYS A 239 REMARK 465 GLU A 240 REMARK 465 LEU A 241 REMARK 465 GLU A 242 REMARK 465 ARG A 243 REMARK 465 ALA A 481 REMARK 465 GLY A 482 REMARK 465 GLU A 483 REMARK 465 ASP A 484 REMARK 465 ASN A 485 REMARK 465 ARG A 486 REMARK 465 GLN A 487 REMARK 465 ASP A 488 REMARK 465 ASN A 489 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 ARG A 480 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 386 O GLY A 467 1.84 REMARK 500 NH1 ARG B 100 O HOH B 305 1.93 REMARK 500 CB LEU A 310 NH2 ARG A 314 2.13 REMARK 500 OE2 GLU A 410 NH2 ARG A 471 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 412 N - CA - C ANGL. DEV. = -20.2 DEGREES REMARK 500 LYS A 468 N - CA - C ANGL. DEV. = 18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 246 0.62 -53.66 REMARK 500 PHE A 428 -3.50 68.62 REMARK 500 ASP A 432 -38.00 -38.17 REMARK 500 ILE B 54 -61.71 -99.16 REMARK 500 VAL B 58 -57.16 70.89 REMARK 500 ASN B 121 66.36 -118.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 359 PRO A 360 146.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 380 OD1 REMARK 620 2 ADP A 501 O1A 78.7 REMARK 620 3 ADP A 501 O3B 75.9 65.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 BFD B 53 OD2 82.9 REMARK 620 3 MET B 55 O 92.4 92.2 REMARK 620 4 HOH B 304 O 86.7 91.9 175.7 REMARK 620 5 HOH B 306 O 95.7 171.8 79.8 96.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JA2 RELATED DB: PDB REMARK 900 RELATED ID: 4JAU RELATED DB: PDB REMARK 900 RELATED ID: 4JAV RELATED DB: PDB DBREF 4JAS A 232 489 UNP Q9WZV7 Q9WZV7_THEMA 232 489 DBREF 4JAS B 1 122 UNP Q9WYT9 Q9WYT9_THEMA 1 122 SEQADV 4JAS VAL A 268 UNP Q9WZV7 ALA 268 ENGINEERED MUTATION SEQADV 4JAS GLY A 271 UNP Q9WZV7 ALA 271 ENGINEERED MUTATION SEQADV 4JAS MET A 275 UNP Q9WZV7 THR 275 ENGINEERED MUTATION SEQADV 4JAS THR A 294 UNP Q9WZV7 VAL 294 ENGINEERED MUTATION SEQADV 4JAS GLU A 297 UNP Q9WZV7 ASP 297 ENGINEERED MUTATION SEQADV 4JAS PRO B 13 UNP Q9WYT9 VAL 13 ENGINEERED MUTATION SEQADV 4JAS ILE B 14 UNP Q9WYT9 LEU 14 ENGINEERED MUTATION SEQADV 4JAS MET B 17 UNP Q9WYT9 ILE 17 ENGINEERED MUTATION SEQADV 4JAS VAL B 21 UNP Q9WYT9 ASN 21 ENGINEERED MUTATION SEQRES 1 A 258 VAL GLU ASN VAL THR GLU SER LYS GLU LEU GLU ARG LEU SEQRES 2 A 258 LYS ARG ILE ASP ARG MET LYS THR GLU PHE ILE ALA ASN SEQRES 3 A 258 ILE SER HIS GLU LEU ARG THR PRO LEU THR VAL ILE LYS SEQRES 4 A 258 GLY TYR ALA GLU MET ILE TYR ASN SER LEU GLY GLU LEU SEQRES 5 A 258 ASP LEU SER THR LEU LYS GLU PHE LEU GLU THR ILE ILE SEQRES 6 A 258 GLU GLN SER ASN HIS LEU GLU ASN LEU LEU ASN GLU LEU SEQRES 7 A 258 LEU ASP PHE SER ARG LEU GLU ARG LYS SER LEU GLN ILE SEQRES 8 A 258 ASN ARG GLU LYS VAL ASP LEU CYS ASP LEU VAL GLU SER SEQRES 9 A 258 ALA VAL ASN ALA ILE LYS GLU PHE ALA SER SER HIS ASN SEQRES 10 A 258 VAL ASN VAL LEU PHE GLU SER ASN VAL PRO CYS PRO VAL SEQRES 11 A 258 GLU ALA TYR ILE ASP PRO THR ARG ILE ARG GLN VAL LEU SEQRES 12 A 258 LEU ASN LEU LEU ASN ASN GLY VAL LYS TYR SER LYS LYS SEQRES 13 A 258 ASP ALA PRO ASP LYS TYR VAL LYS VAL ILE LEU ASP GLU SEQRES 14 A 258 LYS ASP GLY GLY VAL LEU ILE ILE VAL GLU ASP ASN GLY SEQRES 15 A 258 ILE GLY ILE PRO ASP HIS ALA LYS ASP ARG ILE PHE GLU SEQRES 16 A 258 GLN PHE TYR ARG VAL ASP SER SER LEU THR TYR GLU VAL SEQRES 17 A 258 PRO GLY THR GLY LEU GLY LEU ALA ILE THR LYS GLU ILE SEQRES 18 A 258 VAL GLU LEU HIS GLY GLY ARG ILE TRP VAL GLU SER GLU SEQRES 19 A 258 VAL GLY LYS GLY SER ARG PHE PHE VAL TRP ILE PRO LYS SEQRES 20 A 258 ASP ARG ALA GLY GLU ASP ASN ARG GLN ASP ASN SEQRES 1 B 122 MET SER LYS LYS VAL LEU LEU VAL ASP ASP SER ALA PRO SEQRES 2 B 122 ILE ARG LYS MET VAL SER PHE VAL LEU LYS LYS GLU GLY SEQRES 3 B 122 TYR GLU VAL ILE GLU ALA GLU ASN GLY GLN ILE ALA LEU SEQRES 4 B 122 GLU LYS LEU SER GLU PHE THR PRO ASP LEU ILE VAL LEU SEQRES 5 B 122 BFD ILE MET MET PRO VAL MET ASP GLY PHE THR VAL LEU SEQRES 6 B 122 LYS LYS LEU GLN GLU LYS GLU GLU TRP LYS ARG ILE PRO SEQRES 7 B 122 VAL ILE VAL LEU THR ALA LYS GLY GLY GLU GLU ASP GLU SEQRES 8 B 122 SER LEU ALA LEU SER LEU GLY ALA ARG LYS VAL MET ARG SEQRES 9 B 122 LYS PRO PHE SER PRO SER GLN PHE ILE GLU GLU VAL LYS SEQRES 10 B 122 HIS LEU LEU ASN GLU MODRES 4JAS BFD B 53 ASP ASPARTATE BERYLLIUM TRIFLUORIDE HET BFD B 53 12 HET ADP A 501 27 HET MG A 502 1 HET MG B 201 1 HETNAM BFD ASPARTATE BERYLLIUM TRIFLUORIDE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 BFD C4 H6 BE F3 N O4 2- FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *13(H2 O) HELIX 1 1 ARG A 246 SER A 279 1 34 HELIX 2 2 SER A 286 ARG A 317 1 32 HELIX 3 3 LEU A 329 ILE A 340 1 12 HELIX 4 4 ILE A 340 HIS A 347 1 8 HELIX 5 5 ASP A 366 TYR A 384 1 19 HELIX 6 6 HIS A 419 ILE A 424 1 6 HELIX 7 7 VAL A 431 TYR A 437 1 7 HELIX 8 8 LEU A 444 HIS A 456 1 13 HELIX 9 9 SER B 11 GLU B 25 1 15 HELIX 10 10 ASN B 34 SER B 43 1 10 HELIX 11 11 ASP B 60 GLU B 70 1 11 HELIX 12 12 GLU B 88 LEU B 97 1 10 HELIX 13 13 SER B 108 ASN B 121 1 14 SHEET 1 A 2 GLU A 325 ASP A 328 0 SHEET 2 A 2 GLU A 362 ILE A 365 -1 O ILE A 365 N GLU A 325 SHEET 1 B 5 VAL A 349 SER A 355 0 SHEET 2 B 5 LYS A 392 LYS A 401 1 O VAL A 394 N ASN A 350 SHEET 3 B 5 GLY A 404 ASP A 411 -1 O GLU A 410 N LYS A 395 SHEET 4 B 5 GLY A 469 PRO A 477 -1 O ILE A 476 N VAL A 405 SHEET 5 B 5 ARG A 459 GLU A 465 -1 N ARG A 459 O TRP A 475 SHEET 1 C 5 GLU B 28 ALA B 32 0 SHEET 2 C 5 LYS B 4 VAL B 8 1 N LEU B 7 O ALA B 32 SHEET 3 C 5 LEU B 49 LEU B 52 1 O VAL B 51 N VAL B 8 SHEET 4 C 5 VAL B 79 THR B 83 1 O ILE B 80 N LEU B 52 SHEET 5 C 5 LYS B 101 ARG B 104 1 O MET B 103 N VAL B 81 SSBOND 1 CYS A 330 CYS A 359 1555 1555 2.04 LINK C LEU B 52 N BFD B 53 1555 1555 1.33 LINK C BFD B 53 N ILE B 54 1555 1555 1.33 LINK OD1 ASN A 380 MG MG A 502 1555 1555 2.67 LINK O1A ADP A 501 MG MG A 502 1555 1555 2.33 LINK O3B ADP A 501 MG MG A 502 1555 1555 2.55 LINK OD1 ASP B 10 MG MG B 201 1555 1555 2.21 LINK OD2 BFD B 53 MG MG B 201 1555 1555 1.97 LINK O MET B 55 MG MG B 201 1555 1555 2.19 LINK MG MG B 201 O HOH B 304 1555 1555 2.17 LINK MG MG B 201 O HOH B 306 1555 1555 1.92 CISPEP 1 LYS B 105 PRO B 106 0 -5.39 SITE 1 AC1 19 ASN A 376 ASN A 380 LYS A 383 TYR A 384 SITE 2 AC1 19 ASP A 411 ILE A 414 GLY A 415 ILE A 416 SITE 3 AC1 19 ILE A 424 TYR A 429 ARG A 430 VAL A 431 SITE 4 AC1 19 SER A 434 GLY A 441 THR A 442 GLY A 443 SITE 5 AC1 19 GLY A 445 LEU A 446 MG A 502 SITE 1 AC2 4 ASN A 376 ASN A 380 LYS A 383 ADP A 501 SITE 1 AC3 5 ASP B 10 BFD B 53 MET B 55 HOH B 304 SITE 2 AC3 5 HOH B 306 CRYST1 75.710 85.309 185.595 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013208 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005388 0.00000